Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:115653484-117193519

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275 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
msrvh1 3 107469620 to 115830548 8360928 QTL modifier of susceptibility to renal vascular hypertrophy/hyperplasia 1
Tssr35266 3 115669393 to 115669424 31 - TSS region transcription start site region 35266
Tssr31329 3 115674019 to 115674032 13 + TSS region transcription start site region 31329
Tssr31330 3 115674069 to 115674077 8 + TSS region transcription start site region 31330
Tssr35267 3 115682681 to 115682693 12 - TSS region transcription start site region 35267
Tssr31331 3 115683143 to 115683170 27 + TSS region transcription start site region 31331
S1pr1 3 115710433 to 115715055 4622 - protein coding gene sphingosine-1-phosphate receptor 1
Tssr35268 3 115711037 to 115711048 11 - TSS region transcription start site region 35268
Tssr35269 3 115711174 to 115711185 11 - TSS region transcription start site region 35269
Tssr35270 3 115711186 to 115711198 12 - TSS region transcription start site region 35270
Tssr35271 3 115711209 to 115711245 36 - TSS region transcription start site region 35271
Tssr35272 3 115711264 to 115711281 17 - TSS region transcription start site region 35272
Cpgi13724 3 115712220 to 115712551 331 CpG island CpG island 13724
Tssr35273 3 115712539 to 115712554 15 - TSS region transcription start site region 35273
Tssr35274 3 115712603 to 115712613 10 - TSS region transcription start site region 35274
Tssr35275 3 115712855 to 115712867 12 - TSS region transcription start site region 35275
Tssr35276 3 115713717 to 115713747 30 - TSS region transcription start site region 35276
Tssr35277 3 115713793 to 115713806 13 - TSS region transcription start site region 35277
Cpgi13725 3 115714644 to 115715548 904 CpG island CpG island 13725
Tssr35278 3 115714780 to 115714797 17 - TSS region transcription start site region 35278
Tssr35279 3 115714802 to 115714813 11 - TSS region transcription start site region 35279
Tssr35280 3 115714854 to 115714863 9 - TSS region transcription start site region 35280
Tssr35281 3 115714889 to 115714919 30 - TSS region transcription start site region 35281
Tssr35282 3 115714933 to 115714947 14 - TSS region transcription start site region 35282
Tssr35283 3 115715031 to 115715062 31 - TSS region transcription start site region 35283
Gm9889 3 115715150 to 115716728 1578 + lincRNA gene predicted gene 9889
Tssr31332 3 115715156 to 115715172 16 + TSS region transcription start site region 31332
Tssr1027 3 115774232 to 115774237 5 + TSS region transcription start site region 1027
Tssr31333 3 115799534 to 115799545 11 + TSS region transcription start site region 31333
Tssr31334 3 115801084 to 115801099 15 + TSS region transcription start site region 31334
Tssr31335 3 115801112 to 115801120 8 + TSS region transcription start site region 31335
Tssr35284 3 115801156 to 115801171 15 - TSS region transcription start site region 35284
Tssr31336 3 115801809 to 115801823 14 + TSS region transcription start site region 31336
Tssr31337 3 115815844 to 115815891 47 + TSS region transcription start site region 31337
D3Mit57 3 115830392 to 115830548 156 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 57
Wt10q4 3 115830392 to 115830548 156 QTL body weight, 10 weeks, QTL 4
Modn1 3 115841635 to 115841734 99 QTL modifier of Dstn neovascularization 1
Mvb3 3 115841635 to 115841734 99 QTL modifier of vibrator 3
D3Mit315 3 115841635 to 115841734 99 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 315
A930005H10Rik 3 115881581 to 115888130 6549 - lncRNA gene RIKEN cDNA A930005H10 gene
Tssr31338 3 115885805 to 115885815 10 + TSS region transcription start site region 31338
Cpgi13726 3 115887759 to 115888531 772 CpG island CpG island 13726
Tssr31339 3 115887871 to 115887882 11 + TSS region transcription start site region 31339
Tssr35285 3 115887879 to 115887891 12 - TSS region transcription start site region 35285
Tssr35286 3 115888001 to 115888012 11 - TSS region transcription start site region 35286
Tssr35287 3 115888037 to 115888054 17 - TSS region transcription start site region 35287
Tssr35288 3 115888055 to 115888082 27 - TSS region transcription start site region 35288
Tssr35289 3 115888086 to 115888137 51 - TSS region transcription start site region 35289
Tssr31340 3 115888098 to 115888103 5 + TSS region transcription start site region 31340
Tssr31341 3 115888139 to 115888200 61 + TSS region transcription start site region 31341
Dph5 3 115888165 to 115929323 41158 + protein coding gene diphthamide biosynthesis 5
Tssr31342 3 115888208 to 115888233 25 + TSS region transcription start site region 31342
Tssr31343 3 115888242 to 115888250 8 + TSS region transcription start site region 31343
A230060L02Rik 3 115889260 to 115892274 3014 unclassified gene RIKEN cDNA A230060L02 gene
Gm42687 3 115910370 to 115910533 163 + unclassified gene predicted gene 42687
Gm43107 3 115913809 to 115914063 254 - unclassified gene predicted gene 43107
Gm43108 3 115913890 to 115914182 292 + unclassified gene predicted gene 43108
Tssr35290 3 115933704 to 115933707 3 - TSS region transcription start site region 35290
Slc30a7 3 115938973 to 116007406 68433 - protein coding gene solute carrier family 30 (zinc transporter), member 7
Gm43106 3 115942482 to 115943118 636 + pseudogene predicted gene 43106
Gm6649 3 115943103 to 115944264 1161 + pseudogene predicted gene 6649
Tssr35291 3 115974331 to 115974336 5 - TSS region transcription start site region 35291
Tssr31344 3 115974620 to 115974635 15 + TSS region transcription start site region 31344
Mir669n 3 115979902 to 115979955 53 + miRNA gene microRNA 669n
Tssr35292 3 115989310 to 115989339 29 - TSS region transcription start site region 35292
Bmiq5 3 116000000 to 41000000 -75000000 QTL body mass index QTL 5
Tssr35293 3 116006447 to 116006451 4 - TSS region transcription start site region 35293
Cpgi13727 3 116006781 to 116008119 1338 CpG island CpG island 13727
Tssr35294 3 116007340 to 116007396 56 - TSS region transcription start site region 35294
Tssr35295 3 116007399 to 116007411 12 - TSS region transcription start site region 35295
Tssr31345 3 116007457 to 116007540 83 + TSS region transcription start site region 31345
Extl2 3 116007462 to 116029017 21555 + protein coding gene exostoses (multiple)-like 2
Tssr31346 3 116007735 to 116007765 30 + TSS region transcription start site region 31346
Tssr31347 3 116007840 to 116007847 7 + TSS region transcription start site region 31347
Tssr31348 3 116008325 to 116008372 47 + TSS region transcription start site region 31348
Tssr31349 3 116008375 to 116008402 27 + TSS region transcription start site region 31349
Tssr31350 3 116008404 to 116008415 11 + TSS region transcription start site region 31350
Gm26344 3 116065788 to 116065919 131 - snoRNA gene predicted gene, 26344
Gm31384 3 116093593 to 116102373 8780 + lncRNA gene predicted gene, 31384
Vcam1 3 116110020 to 116129688 19668 - protein coding gene vascular cell adhesion molecule 1
Tssr35296 3 116114556 to 116114569 13 - TSS region transcription start site region 35296
Gm43109 3 116128451 to 116141016 12565 + antisense lncRNA gene predicted gene 43109
Tssr35297 3 116129375 to 116129387 12 - TSS region transcription start site region 35297
Tssr35298 3 116129449 to 116129464 15 - TSS region transcription start site region 35298
Tssr35299 3 116129615 to 116129624 9 - TSS region transcription start site region 35299
Tbs1 3 116130456 to 116130601 145 QTL tuberculosis severity 1
D3Mit215 3 116130456 to 116130601 145 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 215
5330425B07Rik 3 116148110 to 116149136 1026 + lncRNA gene RIKEN cDNA 5330425B07 gene
Gm26544 3 116150479 to 116165821 15342 + lincRNA gene predicted gene, 26544
D3Mit346 3 116157389 to 116157514 125 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 346
hem6 3 116157514 to 96641414 -19516100 heritable phenotypic marker haematopoietic 6
gro57 3 116157514 to 96641414 -19516100 heritable phenotypic marker growth/size 57
Tssr31351 3 116184668 to 116184680 12 + TSS region transcription start site region 31351
Gm31651 3 116200408 to 116202713 2305 + lincRNA gene predicted gene, 31651
Gpr88 3 116249654 to 116253498 3844 - protein coding gene G-protein coupled receptor 88
Cpgi13728 3 116251283 to 116252831 1548 CpG island CpG island 13728
Tssr35300 3 116252737 to 116252760 23 - TSS region transcription start site region 35300
Tssr35301 3 116252769 to 116252805 36 - TSS region transcription start site region 35301
Tssr35302 3 116253411 to 116253433 22 - TSS region transcription start site region 35302
Tssr35303 3 116253467 to 116253483 16 - TSS region transcription start site region 35303
Tssr35304 3 116253499 to 116253506 7 - TSS region transcription start site region 35304
Gm46839 3 116257944 to 116269982 12038 + lncRNA gene predicted gene, 46839
Cdc14a 3 116272553 to 116424032 151479 - protein coding gene CDC14 cell division cycle 14A
Cpgi13729 3 116327189 to 116327618 429 CpG island CpG island 13729
Cpgi13730 3 116337050 to 116337312 262 CpG island CpG island 13730
Cpgi13731 3 116347575 to 116348090 515 CpG island CpG island 13731
Gm29151 3 116350103 to 116352888 2785 + antisense lncRNA gene predicted gene 29151
Tssr35305 3 116422223 to 116422237 14 - TSS region transcription start site region 35305
Cpgi13732 3 116422979 to 116424360 1381 CpG island CpG island 13732
Tssr35306 3 116423484 to 116423519 35 - TSS region transcription start site region 35306
Tssr35307 3 116423750 to 116423757 7 - TSS region transcription start site region 35307
Tssr35308 3 116423930 to 116423993 63 - TSS region transcription start site region 35308
Tssr35309 3 116424007 to 116424020 13 - TSS region transcription start site region 35309
Tssr35310 3 116424110 to 116424125 15 - TSS region transcription start site region 35310
Tssr35311 3 116424134 to 116424146 12 - TSS region transcription start site region 35311
Gm40125 3 116424155 to 116435432 11277 + lncRNA gene predicted gene, 40125
Cpgi13733 3 116424372 to 116424677 305 CpG island CpG island 13733
Tssr35312 3 116428722 to 116428750 28 - TSS region transcription start site region 35312
Gm22361 3 116448389 to 116448564 175 - snRNA gene predicted gene, 22361
Cpgi13734 3 116465774 to 116465926 152 CpG island CpG island 13734
Gm26358 3 116466619 to 116466715 96 + snoRNA gene predicted gene, 26358
Rtca 3 116488963 to 116508203 19240 - protein coding gene RNA 3'-terminal phosphate cyclase
Gm26530 3 116488966 to 116493358 4392 + lincRNA gene predicted gene, 26530
Cpgi13735 3 116507572 to 116508329 757 CpG island CpG island 13735
Tssr35313 3 116508035 to 116508070 35 - TSS region transcription start site region 35313
Tssr35314 3 116508071 to 116508119 48 - TSS region transcription start site region 35314
D3Ertd547e 3 116509733 to 116509935 202 DNA segment DNA segment, Chr 3, ERATO Doi 547, expressed
Cpgi13736 3 116512981 to 116513555 574 CpG island CpG island 13736
Dbt 3 116513075 to 116549981 36906 + protein coding gene dihydrolipoamide branched chain transacylase E2
Tssr31352 3 116513094 to 116513144 50 + TSS region transcription start site region 31352
Gm4596 3 116528137 to 116528578 441 - pseudogene predicted gene 4596
Gm43651 3 116532149 to 116532587 438 + unclassified gene predicted gene 43651
D3Mit300 3 116534284 to 116534433 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 300
Tssr31353 3 116534758 to 116534772 14 + TSS region transcription start site region 31353
D3Mit249 3 116546642 to 116546943 301 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 249
Tssr31354 3 116549172 to 116549184 12 + TSS region transcription start site region 31354
Gm9761 3 116560935 to 116561426 491 - pseudogene predicted gene 9761
Tssr35315 3 116561542 to 116561543 1 - TSS region transcription start site region 35315
Tssr31355 3 116562943 to 116562964 21 + TSS region transcription start site region 31355
Tssr31356 3 116562965 to 116563004 39 + TSS region transcription start site region 31356
Lrrc39 3 116562973 to 116583134 20161 + protein coding gene leucine rich repeat containing 39
Tssr31357 3 116563008 to 116563027 19 + TSS region transcription start site region 31357
Tssr31358 3 116563051 to 116563063 12 + TSS region transcription start site region 31358
Tssr31359 3 116563064 to 116563088 24 + TSS region transcription start site region 31359
Gm42940 3 116572063 to 116574424 2361 - unclassified gene predicted gene 42940
Trmt13 3 116581093 to 116614587 33494 - protein coding gene tRNA methyltransferase 13
Cpgi13737 3 116594476 to 116595532 1056 CpG island CpG island 13737
Tssr35316 3 116594816 to 116594841 25 - TSS region transcription start site region 35316
Tssr35317 3 116594848 to 116594898 50 - TSS region transcription start site region 35317
Tssr31360 3 116594959 to 116595031 72 + TSS region transcription start site region 31360
Sass6 3 116594982 to 116631004 36022 + protein coding gene SAS-6 centriolar assembly protein
Tssr31361 3 116598187 to 116598204 17 + TSS region transcription start site region 31361
Tssr31362 3 116598212 to 116598234 22 + TSS region transcription start site region 31362
Gm42893 3 116629173 to 116630984 1811 - antisense lncRNA gene predicted gene 42893
Tssr31363 3 116629262 to 116629266 4 + TSS region transcription start site region 31363
Mfsd14a 3 116631164 to 116662677 31513 - protein coding gene major facilitator superfamily domain containing 14A
Gm42457 3 116631671 to 116632209 538 + antisense lncRNA gene predicted gene 42457
Tssr35318 3 116634973 to 116634984 11 - TSS region transcription start site region 35318
Tssr35319 3 116634990 to 116635024 34 - TSS region transcription start site region 35319
Gm43191 3 116641902 to 116681260 39358 - protein coding gene predicted gene 43191
Tssr35320 3 116645684 to 116645714 30 - TSS region transcription start site region 35320
Tssr35321 3 116645718 to 116645730 12 - TSS region transcription start site region 35321
Tssr35322 3 116655570 to 116655575 5 - TSS region transcription start site region 35322
Tssr35323 3 116659335 to 116659341 6 - TSS region transcription start site region 35323
Tssr31364 3 116661761 to 116661775 14 + TSS region transcription start site region 31364
Cpgi13738 3 116661770 to 116663028 1258 CpG island CpG island 13738
Tssr35324 3 116662092 to 116662104 12 - TSS region transcription start site region 35324
Tssr35325 3 116662270 to 116662339 69 - TSS region transcription start site region 35325
Tssr35326 3 116662537 to 116662548 11 - TSS region transcription start site region 35326
Tssr35327 3 116662554 to 116662570 16 - TSS region transcription start site region 35327
Tssr35328 3 116662571 to 116662584 13 - TSS region transcription start site region 35328
Tssr35329 3 116662590 to 116662641 51 - TSS region transcription start site region 35329
Tssr35330 3 116662643 to 116662654 11 - TSS region transcription start site region 35330
4930512P04Rik 3 116663732 to 116664155 423 + lincRNA gene RIKEN cDNA 4930512P04 gene
Slc35a3 3 116669470 to 116712831 43361 - protein coding gene solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
Gm40126 3 116690388 to 116693380 2992 - lncRNA gene predicted gene, 40126
Cpgi13739 3 116711636 to 116712509 873 CpG island CpG island 13739
Tssr35331 3 116711775 to 116711784 9 - TSS region transcription start site region 35331
Tssr35332 3 116711820 to 116711847 27 - TSS region transcription start site region 35332
Tssr35333 3 116711849 to 116711865 16 - TSS region transcription start site region 35333
Tssr35334 3 116711866 to 116711882 16 - TSS region transcription start site region 35334
Tssr35335 3 116712198 to 116712240 42 - TSS region transcription start site region 35335
Tssr35336 3 116712241 to 116712269 28 - TSS region transcription start site region 35336
Tssr35337 3 116712460 to 116712510 50 - TSS region transcription start site region 35337
Tssr35338 3 116712644 to 116712655 11 - TSS region transcription start site region 35338
Tssr35339 3 116712696 to 116712723 27 - TSS region transcription start site region 35339
Agl 3 116739999 to 116808166 68167 - protein coding gene amylo-1,6-glucosidase, 4-alpha-glucanotransferase
D3Mit314 3 116782995 to 116783194 199 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 314
Tssr35340 3 116804471 to 116804474 3 - TSS region transcription start site region 35340
Tssr35341 3 116807688 to 116807693 5 - TSS region transcription start site region 35341
Tssr35342 3 116807706 to 116807711 5 - TSS region transcription start site region 35342
Cpgi13740 3 116807724 to 116808695 971 CpG island CpG island 13740
Tssr35343 3 116807727 to 116807730 3 - TSS region transcription start site region 35343
Tssr35344 3 116807733 to 116807755 22 - TSS region transcription start site region 35344
Tssr35345 3 116807763 to 116807779 16 - TSS region transcription start site region 35345
Tssr35346 3 116807782 to 116807789 7 - TSS region transcription start site region 35346
Tssr35347 3 116807802 to 116807866 64 - TSS region transcription start site region 35347
Tssr35348 3 116807880 to 116807889 9 - TSS region transcription start site region 35348
Tssr35349 3 116807903 to 116807914 11 - TSS region transcription start site region 35349
Tssr35350 3 116807933 to 116807961 28 - TSS region transcription start site region 35350