Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:111950068-115310147

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm6602 3 111881903 to 112082001 200098 + lincRNA gene predicted gene 6602
D3Mit106 3 112038301 to 112038464 163 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 106
Gm25519 3 112198915 to 112199041 126 - snoRNA gene predicted gene, 25519
Gm43853 3 112202715 to 112203015 300 - pseudogene predicted gene 43853
Tssr1023 3 112202870 to 112202871 1 + TSS region transcription start site region 1023
Gm4859 3 112302372 to 112303158 786 + pseudogene predicted gene 4859
Gm9317 3 112330911 to 112331772 861 - pseudogene predicted gene 9317
Tssr1024 3 112489211 to 112489217 6 + TSS region transcription start site region 1024
Gm42526 3 112591563 to 112591955 392 + pseudogene predicted gene 42526
Gm43587 3 112766809 to 112767012 203 - pseudogene predicted gene 43587
Utp14b-ps1 3 113019875 to 113022139 2264 + pseudogene UTP14B small subunit processome component, pseudogene 1
Gm5548 3 113053889 to 113054285 396 - pseudogene predicted pseudogene 5548
Gm38395 3 113055808 to 113056625 817 - pseudogene predicted gene, 38395
Amy2b 3 113147656 to 113156727 9071 - pseudogene amylase 2b
Tssr35243 3 113149370 to 113149388 18 - TSS region transcription start site region 35243
Tssr1025 3 113155620 to 113155629 9 - TSS region transcription start site region 1025
Tssr35244 3 113156742 to 113156762 20 - TSS region transcription start site region 35244
Tssr31308 3 113162559 to 113162565 6 + TSS region transcription start site region 31308
Amy2-ps1 3 113182249 to 113206697 24448 - pseudogene amylase 2, pseudogene 1
Tssr35245 3 113195082 to 113195105 23 - TSS region transcription start site region 35245
Tssr35246 3 113195106 to 113195112 6 - TSS region transcription start site region 35246
Tssr35247 3 113195161 to 113195191 30 - TSS region transcription start site region 35247
Tssr35248 3 113206694 to 113206698 4 - TSS region transcription start site region 35248
Amy2a5 3 113249178 to 113258699 9521 - protein coding gene amylase 2a5
Amy2a4 3 113279843 to 113291449 11606 - protein coding gene amylase 2a4
Amy2a3 3 113312455 to 113324052 11597 - protein coding gene amylase 2a3
Amy2a2 3 113345055 to 113356658 11603 - protein coding gene amylase 2a2
Amy2a1 3 113529403 to 113532428 3025 - protein coding gene amylase 2a1
Tssr35249 3 113531419 to 113531445 26 - TSS region transcription start site region 35249
Tssr35250 3 113532288 to 113532291 3 - TSS region transcription start site region 35250
Gm46820 3 113543442 to 113545824 2382 - lncRNA gene predicted gene, 46820
Tssr35251 3 113545559 to 113545585 26 - TSS region transcription start site region 35251
Amy1 3 113555952 to 113577750 21798 - protein coding gene amylase 1, salivary
Tssr35252 3 113565011 to 113565022 11 - TSS region transcription start site region 35252
Tssr35253 3 113574217 to 113574225 8 - TSS region transcription start site region 35253
Tssr35254 3 113574242 to 113574269 27 - TSS region transcription start site region 35254
Tssr35255 3 113574641 to 113574652 11 - TSS region transcription start site region 35255
Tssr35256 3 113574704 to 113574713 9 - TSS region transcription start site region 35256
Tssr35257 3 113574758 to 113574774 16 - TSS region transcription start site region 35257
Tssr35258 3 113574790 to 113574802 12 - TSS region transcription start site region 35258
Tssr35259 3 113577733 to 113577740 7 - TSS region transcription start site region 35259
Tssr35260 3 113577743 to 113577756 13 - TSS region transcription start site region 35260
Tssr35261 3 113593131 to 113593135 4 - TSS region transcription start site region 35261
Rnpc3 3 113605067 to 113630149 25082 - protein coding gene RNA-binding region (RNP1, RRM) containing 3
Cpgi13721 3 113629606 to 113630525 919 CpG island CpG island 13721
Tssr31309 3 113629833 to 113629869 36 + TSS region transcription start site region 31309
C530020B09Rik 3 113629852 to 113631282 1430 unclassified non-coding RNA gene RIKEN cDNA C530020B09 gene
Tssr35262 3 113630068 to 113630147 79 - TSS region transcription start site region 35262
Tssr31310 3 113630225 to 113630240 15 + TSS region transcription start site region 31310
Gm17954 3 113631596 to 113632185 589 - pseudogene predicted gene, 17954
Gm17775 3 113729232 to 113729489 257 + pseudogene predicted gene, 17775
Gm18163 3 113854716 to 113856154 1438 + pseudogene predicted gene, 18163
Tssr1026 3 114030473 to 114030480 7 + TSS region transcription start site region 1026
Tssr31311 3 114030484 to 114030493 9 + TSS region transcription start site region 31311
Tssr31312 3 114030532 to 114030571 39 + TSS region transcription start site region 31312
Col11a1 3 114030540 to 114220718 190178 + protein coding gene collagen, type XI, alpha 1
Tssr31313 3 114030584 to 114030638 54 + TSS region transcription start site region 31313
Cpgi13722 3 114030645 to 114030922 277 CpG island CpG island 13722
Tssr31314 3 114030779 to 114030833 54 + TSS region transcription start site region 31314
Tssr31315 3 114030836 to 114030865 29 + TSS region transcription start site region 31315
Tssr31316 3 114030866 to 114030880 14 + TSS region transcription start site region 31316
Tssr31317 3 114094558 to 114094580 22 + TSS region transcription start site region 31317
Tssr31318 3 114118012 to 114118013 1 + TSS region transcription start site region 31318
D3Mit107 3 114415624 to 114415820 196 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 107
Gm43749 3 114544421 to 114544772 351 - pseudogene predicted gene 43749
Gm23750 3 114824154 to 114824285 131 - snoRNA gene predicted gene, 23750
Tssr31319 3 114827648 to 114827651 3 + TSS region transcription start site region 31319
Gm19147 3 114828019 to 114828642 623 - pseudogene predicted gene, 19147
Tssr31320 3 114904062 to 114904142 80 + TSS region transcription start site region 31320
Olfm3 3 114904078 to 115125722 221644 + protein coding gene olfactomedin 3
Cpgi13723 3 114904167 to 114904514 347 CpG island CpG island 13723
Tssr31321 3 114904213 to 114904224 11 + TSS region transcription start site region 31321
Tssr31322 3 114904238 to 114904265 27 + TSS region transcription start site region 31322
Tssr31323 3 114904266 to 114904291 25 + TSS region transcription start site region 31323
Tssr31324 3 114904352 to 114904381 29 + TSS region transcription start site region 31324
Tssr31325 3 114904468 to 114904480 12 + TSS region transcription start site region 31325
Tssr31326 3 114913613 to 114913616 3 + TSS region transcription start site region 31326
Tssr31327 3 115081025 to 115081036 11 + TSS region transcription start site region 31327
Gm18429 3 115171629 to 115172049 420 - pseudogene predicted gene, 18429
D3Nds5 3 115268161 to 115268307 146 DNA segment DNA segment, Chr 3, Nuffield Department of Surgery 5