Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:109579068-111549401

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vav3 3 109340653 to 109685698 345045 + protein coding gene vav 3 oncogene
Tssr31303 3 109598542 to 109598546 4 + TSS region transcription start site region 31303
Tssr31304 3 109684570 to 109684576 6 + TSS region transcription start site region 31304
Tssr35230 3 109768836 to 109768846 10 - TSS region transcription start site region 35230
Ntng1 3 109780050 to 110144005 363955 - protein coding gene netrin G1
Cpgi13717 3 109782728 to 109782950 222 CpG island CpG island 13717
Tssr35231 3 109808255 to 109808258 3 - TSS region transcription start site region 35231
Tssr35232 3 109812232 to 109812234 2 - TSS region transcription start site region 35232
Gm25681 3 109863780 to 109863885 105 + snRNA gene predicted gene, 25681
Cpgi13718 3 109872018 to 109872257 239 CpG island CpG island 13718
Gm12535 3 109907384 to 109907867 483 + pseudogene predicted gene 12535
Cpgi13719 3 110142250 to 110144102 1852 CpG island CpG island 13719
Tssr35233 3 110142744 to 110142758 14 - TSS region transcription start site region 35233
Tssr35234 3 110142996 to 110143010 14 - TSS region transcription start site region 35234
Tssr1022 3 110143406 to 110143410 4 + TSS region transcription start site region 1022
Tssr35235 3 110143513 to 110143525 12 - TSS region transcription start site region 35235
Tssr35236 3 110143562 to 110143579 17 - TSS region transcription start site region 35236
Tssr35237 3 110143680 to 110143691 11 - TSS region transcription start site region 35237
Tssr35238 3 110143698 to 110143715 17 - TSS region transcription start site region 35238
Tssr35239 3 110143786 to 110143842 56 - TSS region transcription start site region 35239
Tssr35240 3 110143937 to 110143948 11 - TSS region transcription start site region 35240
Tssr31305 3 110145516 to 110145520 4 + TSS region transcription start site region 31305
Ogrq1 3 110177041 to 136010051 25833010 QTL overall growth rate QTL 1
Pwbwq7 3 110177041 to 136010051 25833010 QTL post-weaning body weight QTL 7
Pwbwq6 3 110177041 to 136010051 25833010 QTL post-weaning body weight QTL 6
D3Mit123 3 110220135 to 110220392 257 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 123
Gm42516 3 110243862 to 110244628 766 - unclassified gene predicted gene 42516
Prmt6 3 110246109 to 110250998 4889 - protein coding gene protein arginine N-methyltransferase 6
Cpgi13720 3 110249749 to 110251164 1415 CpG island CpG island 13720
C130013H08Rik 3 110250015 to 110253706 3691 + antisense lncRNA gene RIKEN cDNA C130013H08 gene
Tssr31306 3 110250143 to 110250178 35 + TSS region transcription start site region 31306
Tssr31307 3 110250183 to 110250204 21 + TSS region transcription start site region 31307
Tssr35241 3 110250963 to 110251015 52 - TSS region transcription start site region 35241
Tssr35242 3 110251368 to 110251381 13 - TSS region transcription start site region 35242
Gm43405 3 110277136 to 110277472 336 - pseudogene predicted gene 43405
Gm19185 3 110399131 to 110399773 642 + pseudogene predicted gene, 19185
Gm43406 3 110564068 to 110564401 333 - pseudogene predicted gene 43406
Gm26076 3 110564437 to 110564541 104 - snRNA gene predicted gene, 26076
Gm43404 3 110634323 to 110636856 2533 + unclassified gene predicted gene 43404
Gm43407 3 111108500 to 111108816 316 + pseudogene predicted gene 43407
Gm9314 3 111321330 to 111322857 1527 - pseudogene predicted gene 9314
D3Mit78 3 111363757 to 111363871 114 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 78