Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:109198255-110418258

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr31280 3 109250979 to 109251017 38 + TSS region transcription start site region 31280
Tssr31281 3 109267176 to 109267214 38 + TSS region transcription start site region 31281
Cpgi13716 3 109340128 to 109341354 1226 CpG island CpG island 13716
Tssr31282 3 109340339 to 109340368 29 + TSS region transcription start site region 31282
Tssr31283 3 109340464 to 109340473 9 + TSS region transcription start site region 31283
Tssr31284 3 109340627 to 109340646 19 + TSS region transcription start site region 31284
Vav3 3 109340653 to 109685698 345045 + protein coding gene vav 3 oncogene
Tssr31285 3 109340662 to 109340670 8 + TSS region transcription start site region 31285
Tssr31286 3 109340671 to 109340692 21 + TSS region transcription start site region 31286
Tssr31287 3 109340703 to 109340715 12 + TSS region transcription start site region 31287
Tssr31288 3 109340731 to 109340743 12 + TSS region transcription start site region 31288
Tssr31289 3 109340754 to 109340787 33 + TSS region transcription start site region 31289
Tssr31290 3 109340793 to 109340820 27 + TSS region transcription start site region 31290
D3Mit158 3 109344217 to 109344334 117 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 158
Pgia26 3 109344217 to 109344334 117 QTL proteoglycan induced arthritis 26
Tssr35227 3 109361972 to 109361985 13 - TSS region transcription start site region 35227
Tssr35228 3 109361986 to 109361994 8 - TSS region transcription start site region 35228
Tssr35229 3 109362000 to 109362010 10 - TSS region transcription start site region 35229
Tssr31291 3 109371921 to 109371925 4 + TSS region transcription start site region 31291
Tssr31292 3 109380671 to 109380677 6 + TSS region transcription start site region 31292
Tssr31293 3 109386669 to 109386681 12 + TSS region transcription start site region 31293
C130083B21Rik 3 109450900 to 109454700 3800 unclassified gene RIKEN cDNA C130083B21 gene
Tssr31294 3 109452976 to 109452978 2 + TSS region transcription start site region 31294
Tssr31295 3 109507811 to 109507824 13 + TSS region transcription start site region 31295
Tssr31296 3 109509146 to 109509185 39 + TSS region transcription start site region 31296
Tssr31297 3 109524241 to 109524255 14 + TSS region transcription start site region 31297
Tssr31298 3 109556939 to 109556945 6 + TSS region transcription start site region 31298
Tssr31299 3 109560711 to 109560715 4 + TSS region transcription start site region 31299
Tssr31300 3 109573969 to 109573990 21 + TSS region transcription start site region 31300
Tssr31301 3 109574001 to 109574017 16 + TSS region transcription start site region 31301
Tssr31302 3 109574019 to 109574026 7 + TSS region transcription start site region 31302
Tssr31303 3 109598542 to 109598546 4 + TSS region transcription start site region 31303
Tssr31304 3 109684570 to 109684576 6 + TSS region transcription start site region 31304
Tssr35230 3 109768836 to 109768846 10 - TSS region transcription start site region 35230
Ntng1 3 109780050 to 110144005 363955 - protein coding gene netrin G1
Cpgi13717 3 109782728 to 109782950 222 CpG island CpG island 13717
Tssr35231 3 109808255 to 109808258 3 - TSS region transcription start site region 35231
Tssr35232 3 109812232 to 109812234 2 - TSS region transcription start site region 35232
Gm25681 3 109863780 to 109863885 105 + snRNA gene predicted gene, 25681
Cpgi13718 3 109872018 to 109872257 239 CpG island CpG island 13718
Gm12535 3 109907384 to 109907867 483 + pseudogene predicted gene 12535
Cpgi13719 3 110142250 to 110144102 1852 CpG island CpG island 13719
Tssr35233 3 110142744 to 110142758 14 - TSS region transcription start site region 35233
Tssr35234 3 110142996 to 110143010 14 - TSS region transcription start site region 35234
Tssr1022 3 110143406 to 110143410 4 + TSS region transcription start site region 1022
Tssr35235 3 110143513 to 110143525 12 - TSS region transcription start site region 35235
Tssr35236 3 110143562 to 110143579 17 - TSS region transcription start site region 35236
Tssr35237 3 110143680 to 110143691 11 - TSS region transcription start site region 35237
Tssr35238 3 110143698 to 110143715 17 - TSS region transcription start site region 35238
Tssr35239 3 110143786 to 110143842 56 - TSS region transcription start site region 35239
Tssr35240 3 110143937 to 110143948 11 - TSS region transcription start site region 35240
Tssr31305 3 110145516 to 110145520 4 + TSS region transcription start site region 31305
Pwbwq7 3 110177041 to 136010051 25833010 QTL post-weaning body weight QTL 7
Ogrq1 3 110177041 to 136010051 25833010 QTL overall growth rate QTL 1
Pwbwq6 3 110177041 to 136010051 25833010 QTL post-weaning body weight QTL 6
D3Mit123 3 110220135 to 110220392 257 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 123
Gm42516 3 110243862 to 110244628 766 - unclassified gene predicted gene 42516
Prmt6 3 110246109 to 110250998 4889 - protein coding gene protein arginine N-methyltransferase 6
Cpgi13720 3 110249749 to 110251164 1415 CpG island CpG island 13720
C130013H08Rik 3 110250015 to 110253706 3691 + antisense lncRNA gene RIKEN cDNA C130013H08 gene
Tssr31306 3 110250143 to 110250178 35 + TSS region transcription start site region 31306
Tssr31307 3 110250183 to 110250204 21 + TSS region transcription start site region 31307
Tssr35241 3 110250963 to 110251015 52 - TSS region transcription start site region 35241
Tssr35242 3 110251368 to 110251381 13 - TSS region transcription start site region 35242
Gm43405 3 110277136 to 110277472 336 - pseudogene predicted gene 43405
Gm19185 3 110399131 to 110399773 642 + pseudogene predicted gene, 19185