Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:108940662-109740670

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Henmt1 3 108939873 to 108960774 20901 + protein coding gene HEN1 methyltransferase homolog 1 (Arabidopsis)
Cpgi13712 3 108939926 to 108940815 889 CpG island CpG island 13712
Tssr35205 3 108955644 to 108955655 11 - TSS region transcription start site region 35205
Fam102b 3 108970997 to 109027607 56610 - protein coding gene family with sequence similarity 102, member B
Tssr35206 3 108972248 to 108972252 4 - TSS region transcription start site region 35206
Tssr35207 3 108972305 to 108972366 61 - TSS region transcription start site region 35207
Tssr35208 3 108972411 to 108972447 36 - TSS region transcription start site region 35208
Tssr35209 3 108972616 to 108972631 15 - TSS region transcription start site region 35209
Tssr35210 3 108972761 to 108972772 11 - TSS region transcription start site region 35210
Tssr35211 3 108972807 to 108972828 21 - TSS region transcription start site region 35211
Tssr35212 3 108973281 to 108973300 19 - TSS region transcription start site region 35212
Tssr35213 3 108976491 to 108976498 7 - TSS region transcription start site region 35213
Tssr35214 3 108976550 to 108976566 16 - TSS region transcription start site region 35214
Tssr35215 3 108976567 to 108976586 19 - TSS region transcription start site region 35215
Tssr35216 3 108976693 to 108976702 9 - TSS region transcription start site region 35216
Gm43221 3 109000024 to 109002094 2070 + antisense lncRNA gene predicted gene 43221
Tssr35217 3 109009079 to 109009081 2 - TSS region transcription start site region 35217
Tssr35218 3 109009118 to 109009121 3 - TSS region transcription start site region 35218
Tssr35219 3 109017758 to 109017771 13 - TSS region transcription start site region 35219
Tssr35220 3 109021808 to 109021815 7 - TSS region transcription start site region 35220
Tssr35221 3 109021869 to 109021913 44 - TSS region transcription start site region 35221
Tssr35222 3 109022074 to 109022088 14 - TSS region transcription start site region 35222
Tssr35223 3 109022323 to 109022339 16 - TSS region transcription start site region 35223
Tssr31274 3 109025981 to 109025997 16 + TSS region transcription start site region 31274
Cpgi13713 3 109026828 to 109027943 1115 CpG island CpG island 13713
Tssr35224 3 109027600 to 109027646 46 - TSS region transcription start site region 35224
Tssr35225 3 109027656 to 109027665 9 - TSS region transcription start site region 35225
D3Mit286 3 109031251 to 109031371 120 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 286
Tssr35226 3 109051819 to 109051831 12 - TSS region transcription start site region 35226
Gm44384 3 109055634 to 109055747 113 + miRNA gene predicted gene, 44384
Gm36778 3 109055708 to 109065353 9645 + lncRNA gene predicted gene, 36778
4930408K08Rik 3 109078590 to 109080414 1824 - lincRNA gene RIKEN cDNA 4930408K08 gene
Cpgi13714 3 109080373 to 109080717 344 CpG island CpG island 13714
Tssr31275 3 109080463 to 109080487 24 + TSS region transcription start site region 31275
Slc25a54 3 109080499 to 109116582 36083 + protein coding gene solute carrier family 25, member 54
Gm19391 3 109120533 to 109122895 2362 - lncRNA gene predicted gene, 19391
Cpgi13715 3 109122849 to 109123545 696 CpG island CpG island 13715
Tssr31276 3 109123000 to 109123059 59 + TSS region transcription start site region 31276
Tssr31277 3 109123104 to 109123167 63 + TSS region transcription start site region 31277
Slc25a24 3 109123149 to 109168409 45260 + protein coding gene solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24
Tssr31278 3 109123176 to 109123196 20 + TSS region transcription start site region 31278
Tssr31279 3 109123279 to 109123290 11 + TSS region transcription start site region 31279
Gm13865 3 109192024 to 109192837 813 - pseudogene predicted gene 13865
Tssr31280 3 109250979 to 109251017 38 + TSS region transcription start site region 31280
Tssr31281 3 109267176 to 109267214 38 + TSS region transcription start site region 31281
Cpgi13716 3 109340128 to 109341354 1226 CpG island CpG island 13716
Tssr31282 3 109340339 to 109340368 29 + TSS region transcription start site region 31282
Tssr31283 3 109340464 to 109340473 9 + TSS region transcription start site region 31283
Tssr31284 3 109340627 to 109340646 19 + TSS region transcription start site region 31284
Vav3 3 109340653 to 109685698 345045 + protein coding gene vav 3 oncogene
Tssr31285 3 109340662 to 109340670 8 + TSS region transcription start site region 31285
Tssr31286 3 109340671 to 109340692 21 + TSS region transcription start site region 31286
Tssr31287 3 109340703 to 109340715 12 + TSS region transcription start site region 31287
Tssr31288 3 109340731 to 109340743 12 + TSS region transcription start site region 31288
Tssr31289 3 109340754 to 109340787 33 + TSS region transcription start site region 31289
Tssr31290 3 109340793 to 109340820 27 + TSS region transcription start site region 31290
D3Mit158 3 109344217 to 109344334 117 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 158
Pgia26 3 109344217 to 109344334 117 QTL proteoglycan induced arthritis 26
Tssr35227 3 109361972 to 109361985 13 - TSS region transcription start site region 35227
Tssr35228 3 109361986 to 109361994 8 - TSS region transcription start site region 35228
Tssr35229 3 109362000 to 109362010 10 - TSS region transcription start site region 35229
Tssr31291 3 109371921 to 109371925 4 + TSS region transcription start site region 31291
Tssr31292 3 109380671 to 109380677 6 + TSS region transcription start site region 31292
Tssr31293 3 109386669 to 109386681 12 + TSS region transcription start site region 31293
C130083B21Rik 3 109450900 to 109454700 3800 unclassified gene RIKEN cDNA C130083B21 gene
Tssr31294 3 109452976 to 109452978 2 + TSS region transcription start site region 31294
Tssr31295 3 109507811 to 109507824 13 + TSS region transcription start site region 31295
Tssr31296 3 109509146 to 109509185 39 + TSS region transcription start site region 31296
Tssr31297 3 109524241 to 109524255 14 + TSS region transcription start site region 31297
Tssr31298 3 109556939 to 109556945 6 + TSS region transcription start site region 31298
Tssr31299 3 109560711 to 109560715 4 + TSS region transcription start site region 31299
Tssr31300 3 109573969 to 109573990 21 + TSS region transcription start site region 31300
Tssr31301 3 109574001 to 109574017 16 + TSS region transcription start site region 31301
Tssr31302 3 109574019 to 109574026 7 + TSS region transcription start site region 31302
Tssr31303 3 109598542 to 109598546 4 + TSS region transcription start site region 31303
Tssr31304 3 109684570 to 109684576 6 + TSS region transcription start site region 31304