Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:108905708-109215353

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prpf38b 3 108902805 to 108911727 8922 - protein coding gene PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
Tssr35198 3 108906980 to 108906984 4 - TSS region transcription start site region 35198
Tssr35199 3 108907803 to 108907824 21 - TSS region transcription start site region 35199
Tssr35200 3 108908053 to 108908066 13 - TSS region transcription start site region 35200
Tssr35201 3 108908071 to 108908089 18 - TSS region transcription start site region 35201
Cpgi13711 3 108910748 to 108912050 1302 CpG island CpG island 13711
Tssr35202 3 108911452 to 108911492 40 - TSS region transcription start site region 35202
Tssr35203 3 108911670 to 108911684 14 - TSS region transcription start site region 35203
Tssr35204 3 108911687 to 108911746 59 - TSS region transcription start site region 35204
Tssr31269 3 108911806 to 108911824 18 + TSS region transcription start site region 31269
Tssr31270 3 108911828 to 108911856 28 + TSS region transcription start site region 31270
Tssr31271 3 108912413 to 108912422 9 + TSS region transcription start site region 31271
Henmt1 3 108939873 to 108960774 20901 + protein coding gene HEN1 methyltransferase homolog 1 (Arabidopsis)
Cpgi13712 3 108939926 to 108940815 889 CpG island CpG island 13712
Gm9857 3 108940053 to 108940445 392 - protein coding gene predicted gene 9857
Tssr31272 3 108940076 to 108940107 31 + TSS region transcription start site region 31272
Tssr31273 3 108940108 to 108940125 17 + TSS region transcription start site region 31273
Tssr35205 3 108955644 to 108955655 11 - TSS region transcription start site region 35205
Fam102b 3 108970997 to 109027607 56610 - protein coding gene family with sequence similarity 102, member B
Tssr35206 3 108972248 to 108972252 4 - TSS region transcription start site region 35206
Tssr35207 3 108972305 to 108972366 61 - TSS region transcription start site region 35207
Tssr35208 3 108972411 to 108972447 36 - TSS region transcription start site region 35208
Tssr35209 3 108972616 to 108972631 15 - TSS region transcription start site region 35209
Tssr35210 3 108972761 to 108972772 11 - TSS region transcription start site region 35210
Tssr35211 3 108972807 to 108972828 21 - TSS region transcription start site region 35211
Tssr35212 3 108973281 to 108973300 19 - TSS region transcription start site region 35212
Tssr35213 3 108976491 to 108976498 7 - TSS region transcription start site region 35213
Tssr35214 3 108976550 to 108976566 16 - TSS region transcription start site region 35214
Tssr35215 3 108976567 to 108976586 19 - TSS region transcription start site region 35215
Tssr35216 3 108976693 to 108976702 9 - TSS region transcription start site region 35216
Gm43221 3 109000024 to 109002094 2070 + antisense lncRNA gene predicted gene 43221
Tssr35217 3 109009079 to 109009081 2 - TSS region transcription start site region 35217
Tssr35218 3 109009118 to 109009121 3 - TSS region transcription start site region 35218
Tssr35219 3 109017758 to 109017771 13 - TSS region transcription start site region 35219
Tssr35220 3 109021808 to 109021815 7 - TSS region transcription start site region 35220
Tssr35221 3 109021869 to 109021913 44 - TSS region transcription start site region 35221
Tssr35222 3 109022074 to 109022088 14 - TSS region transcription start site region 35222
Tssr35223 3 109022323 to 109022339 16 - TSS region transcription start site region 35223
Tssr31274 3 109025981 to 109025997 16 + TSS region transcription start site region 31274
Cpgi13713 3 109026828 to 109027943 1115 CpG island CpG island 13713
Tssr35224 3 109027600 to 109027646 46 - TSS region transcription start site region 35224
Tssr35225 3 109027656 to 109027665 9 - TSS region transcription start site region 35225
D3Mit286 3 109031251 to 109031371 120 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 286
Tssr35226 3 109051819 to 109051831 12 - TSS region transcription start site region 35226
Gm44384 3 109055634 to 109055747 113 + miRNA gene predicted gene, 44384
Gm36778 3 109055708 to 109065353 9645 + lncRNA gene predicted gene, 36778
4930408K08Rik 3 109078590 to 109080414 1824 - lincRNA gene RIKEN cDNA 4930408K08 gene
Cpgi13714 3 109080373 to 109080717 344 CpG island CpG island 13714
Tssr31275 3 109080463 to 109080487 24 + TSS region transcription start site region 31275
Slc25a54 3 109080499 to 109116582 36083 + protein coding gene solute carrier family 25, member 54
Gm19391 3 109120533 to 109122895 2362 - lncRNA gene predicted gene, 19391
Cpgi13715 3 109122849 to 109123545 696 CpG island CpG island 13715
Tssr31276 3 109123000 to 109123059 59 + TSS region transcription start site region 31276
Tssr31277 3 109123104 to 109123167 63 + TSS region transcription start site region 31277
Slc25a24 3 109123149 to 109168409 45260 + protein coding gene solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24
Tssr31278 3 109123176 to 109123196 20 + TSS region transcription start site region 31278
Tssr31279 3 109123279 to 109123290 11 + TSS region transcription start site region 31279
Gm13865 3 109192024 to 109192837 813 - pseudogene predicted gene 13865