Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Wdr47 | 3 | 54440 | + | protein coding gene | WD repeat domain 47 | |
Cpgi13708 | 3 | 675 | CpG island | CpG island 13708 | ||
Tssr35157 | 3 | 32 | - | TSS region | transcription start site region 35157 | |
Tssr31261 | 3 | 21 | + | TSS region | transcription start site region 31261 | |
Clcc1 | 3 | 24927 | + | protein coding gene | chloride channel CLIC-like 1 | |
Tssr31262 | 3 | 33 | + | TSS region | transcription start site region 31262 | |
Tssr31263 | 3 | 7 | + | TSS region | transcription start site region 31263 | |
Tssr31264 | 3 | 4 | + | TSS region | transcription start site region 31264 | |
D3Mit122 | 3 | 144 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 122 | ||
Gpsm2 | 3 | 43671 | - | protein coding gene | G-protein signalling modulator 2 (AGS3-like, C. elegans) | |
Tssr35158 | 3 | 6 | - | TSS region | transcription start site region 35158 | |
Tssr35159 | 3 | 13 | - | TSS region | transcription start site region 35159 | |
Tssr35160 | 3 | 17 | - | TSS region | transcription start site region 35160 | |
Tssr35161 | 3 | 7 | - | TSS region | transcription start site region 35161 | |
Gm27244 | 3 | 3745 | + | antisense lncRNA gene | predicted gene 27244 | |
Tssr35162 | 3 | 9 | - | TSS region | transcription start site region 35162 | |
Tssr35163 | 3 | 13 | - | TSS region | transcription start site region 35163 | |
Tssr35164 | 3 | 7 | - | TSS region | transcription start site region 35164 | |
Tssr35165 | 3 | 3 | - | TSS region | transcription start site region 35165 | |
Cpgi13709 | 3 | 1074 | CpG island | CpG island 13709 | ||
Tssr35166 | 3 | 10 | - | TSS region | transcription start site region 35166 | |
Tssr35167 | 3 | 14 | - | TSS region | transcription start site region 35167 | |
Tssr35168 | 3 | 59 | - | TSS region | transcription start site region 35168 | |
Tssr35169 | 3 | 11 | - | TSS region | transcription start site region 35169 | |
Tssr35170 | 3 | 30 | - | TSS region | transcription start site region 35170 | |
Aknad1 | 3 | 42651 | + | protein coding gene | AKNA domain containing 1 | |
Tssr31265 | 3 | 44 | + | TSS region | transcription start site region 31265 | |
D3Mit343.2 | 3 | 166 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 343.2 | ||
D3Mit39 | 3 | 227 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 39 | ||
Tssr31266 | 3 | 19 | + | TSS region | transcription start site region 31266 | |
Tssr31267 | 3 | 9 | + | TSS region | transcription start site region 31267 | |
Stxbp3 | 3 | 47322 | - | protein coding gene | syntaxin binding protein 3 | |
Tssr35171 | 3 | 4 | - | TSS region | transcription start site region 35171 | |
Tssr35172 | 3 | 17 | - | TSS region | transcription start site region 35172 | |
Tssr35173 | 3 | 8 | - | TSS region | transcription start site region 35173 | |
Cpgi13710 | 3 | 795 | CpG island | CpG island 13710 | ||
Tssr35174 | 3 | 5 | - | TSS region | transcription start site region 35174 | |
Tssr35175 | 3 | 32 | - | TSS region | transcription start site region 35175 | |
Tssr35176 | 3 | 10 | - | TSS region | transcription start site region 35176 | |
Tssr35177 | 3 | 24 | - | TSS region | transcription start site region 35177 | |
Fndc7 | 3 | 36330 | - | protein coding gene | fibronectin type III domain containing 7 | |
Tssr35178 | 3 | 5 | - | TSS region | transcription start site region 35178 | |
Tssr31268 | 3 | 12 | + | TSS region | transcription start site region 31268 | |
Tssr35179 | 3 | 34 | - | TSS region | transcription start site region 35179 | |
Gm43097 | 3 | 150 | + | pseudogene | predicted gene 43097 | |
Tssr35180 | 3 | 9 | - | TSS region | transcription start site region 35180 | |
Tssr35181 | 3 | 3 | - | TSS region | transcription start site region 35181 | |
Tssr35182 | 3 | 27 | - | TSS region | transcription start site region 35182 | |
Tssr35183 | 3 | 5 | - | TSS region | transcription start site region 35183 | |
Tssr35184 | 3 | 41 | - | TSS region | transcription start site region 35184 | |
Prpf38b | 3 | 8922 | - | protein coding gene | PRP38 pre-mRNA processing factor 38 (yeast) domain containing B | |
Tssr35185 | 3 | 14 | - | TSS region | transcription start site region 35185 | |
Tssr1021 | 3 | 17 | - | TSS region | transcription start site region 1021 | |
Tssr35186 | 3 | 9 | - | TSS region | transcription start site region 35186 | |
Tssr35187 | 3 | 8 | - | TSS region | transcription start site region 35187 | |
Tssr35188 | 3 | 20 | - | TSS region | transcription start site region 35188 | |
Tssr35189 | 3 | 11 | - | TSS region | transcription start site region 35189 | |
Tssr35190 | 3 | 14 | - | TSS region | transcription start site region 35190 | |
Tssr35191 | 3 | 7 | - | TSS region | transcription start site region 35191 | |
Tssr35192 | 3 | 20 | - | TSS region | transcription start site region 35192 | |
Tssr35193 | 3 | 9 | - | TSS region | transcription start site region 35193 | |
Tssr35194 | 3 | 11 | - | TSS region | transcription start site region 35194 | |
Tssr35195 | 3 | 43 | - | TSS region | transcription start site region 35195 | |
Tssr35196 | 3 | 13 | - | TSS region | transcription start site region 35196 | |
Tssr35197 | 3 | 3 | - | TSS region | transcription start site region 35197 | |
Tssr35198 | 3 | 4 | - | TSS region | transcription start site region 35198 | |
Tssr35199 | 3 | 21 | - | TSS region | transcription start site region 35199 | |
Tssr35200 | 3 | 13 | - | TSS region | transcription start site region 35200 | |
Tssr35201 | 3 | 18 | - | TSS region | transcription start site region 35201 | |
Cpgi13711 | 3 | 1302 | CpG island | CpG island 13711 | ||
Tssr35202 | 3 | 40 | - | TSS region | transcription start site region 35202 | |
Tssr35203 | 3 | 14 | - | TSS region | transcription start site region 35203 | |
Tssr35204 | 3 | 59 | - | TSS region | transcription start site region 35204 | |
Tssr31269 | 3 | 18 | + | TSS region | transcription start site region 31269 | |
Tssr31270 | 3 | 28 | + | TSS region | transcription start site region 31270 | |
Tssr31271 | 3 | 9 | + | TSS region | transcription start site region 31271 | |
Henmt1 | 3 | 20901 | + | protein coding gene | HEN1 methyltransferase homolog 1 (Arabidopsis) | |
Cpgi13712 | 3 | 889 | CpG island | CpG island 13712 | ||
Gm9857 | 3 | 392 | - | protein coding gene | predicted gene 9857 | |
Tssr31272 | 3 | 31 | + | TSS region | transcription start site region 31272 | |
Tssr31273 | 3 | 17 | + | TSS region | transcription start site region 31273 | |
Tssr35205 | 3 | 11 | - | TSS region | transcription start site region 35205 | |
Fam102b | 3 | 56610 | - | protein coding gene | family with sequence similarity 102, member B | |
Tssr35206 | 3 | 4 | - | TSS region | transcription start site region 35206 | |
Tssr35207 | 3 | 61 | - | TSS region | transcription start site region 35207 | |
Tssr35208 | 3 | 36 | - | TSS region | transcription start site region 35208 | |
Tssr35209 | 3 | 15 | - | TSS region | transcription start site region 35209 | |
Tssr35210 | 3 | 11 | - | TSS region | transcription start site region 35210 | |
Tssr35211 | 3 | 21 | - | TSS region | transcription start site region 35211 | |
Tssr35212 | 3 | 19 | - | TSS region | transcription start site region 35212 | |
Tssr35213 | 3 | 7 | - | TSS region | transcription start site region 35213 | |
Tssr35214 | 3 | 16 | - | TSS region | transcription start site region 35214 | |
Tssr35215 | 3 | 19 | - | TSS region | transcription start site region 35215 | |
Tssr35216 | 3 | 9 | - | TSS region | transcription start site region 35216 | |
Gm43221 | 3 | 2070 | + | antisense lncRNA gene | predicted gene 43221 | |
Tssr35217 | 3 | 2 | - | TSS region | transcription start site region 35217 | |
Tssr35218 | 3 | 3 | - | TSS region | transcription start site region 35218 | |
Tssr35219 | 3 | 13 | - | TSS region | transcription start site region 35219 | |
Tssr35220 | 3 | 7 | - | TSS region | transcription start site region 35220 | |
Tssr35221 | 3 | 44 | - | TSS region | transcription start site region 35221 | |
Tssr35222 | 3 | 14 | - | TSS region | transcription start site region 35222 | |
Tssr35223 | 3 | 16 | - | TSS region | transcription start site region 35223 | |
Tssr31274 | 3 | 16 | + | TSS region | transcription start site region 31274 | |
Cpgi13713 | 3 | 1115 | CpG island | CpG island 13713 | ||
Tssr35224 | 3 | 46 | - | TSS region | transcription start site region 35224 | |
Tssr35225 | 3 | 9 | - | TSS region | transcription start site region 35225 | |
D3Mit286 | 3 | 120 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 286 | ||
Tssr35226 | 3 | 12 | - | TSS region | transcription start site region 35226 | |
Gm44384 | 3 | 113 | + | miRNA gene | predicted gene, 44384 | |
Gm36778 | 3 | 9645 | + | lncRNA gene | predicted gene, 36778 | |
4930408K08Rik | 3 | 1824 | - | lincRNA gene | RIKEN cDNA 4930408K08 gene | |
Cpgi13714 | 3 | 344 | CpG island | CpG island 13714 | ||
Tssr31275 | 3 | 24 | + | TSS region | transcription start site region 31275 | |
Slc25a54 | 3 | 36083 | + | protein coding gene | solute carrier family 25, member 54 | |
Gm19391 | 3 | 2362 | - | lncRNA gene | predicted gene, 19391 | |
Cpgi13715 | 3 | 696 | CpG island | CpG island 13715 | ||
Tssr31276 | 3 | 59 | + | TSS region | transcription start site region 31276 | |
Tssr31277 | 3 | 63 | + | TSS region | transcription start site region 31277 | |
Slc25a24 | 3 | 45260 | + | protein coding gene | solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24 | |
Tssr31278 | 3 | 20 | + | TSS region | transcription start site region 31278 | |
Tssr31279 | 3 | 11 | + | TSS region | transcription start site region 31279 | |
Gm13865 | 3 | 813 | - | pseudogene | predicted gene 13865 | |
Tssr31280 | 3 | 38 | + | TSS region | transcription start site region 31280 | |
Tssr31281 | 3 | 38 | + | TSS region | transcription start site region 31281 | |
Cpgi13716 | 3 | 1226 | CpG island | CpG island 13716 | ||
Tssr31282 | 3 | 29 | + | TSS region | transcription start site region 31282 | |
Tssr31283 | 3 | 9 | + | TSS region | transcription start site region 31283 | |
Tssr31284 | 3 | 19 | + | TSS region | transcription start site region 31284 | |
Vav3 | 3 | 345045 | + | protein coding gene | vav 3 oncogene | |
Tssr31285 | 3 | 8 | + | TSS region | transcription start site region 31285 | |
Tssr31286 | 3 | 21 | + | TSS region | transcription start site region 31286 | |
Tssr31287 | 3 | 12 | + | TSS region | transcription start site region 31287 | |
Tssr31288 | 3 | 12 | + | TSS region | transcription start site region 31288 | |
Tssr31289 | 3 | 33 | + | TSS region | transcription start site region 31289 | |
Tssr31290 | 3 | 27 | + | TSS region | transcription start site region 31290 | |
Pgia26 | 3 | 117 | QTL | proteoglycan induced arthritis 26 | ||
D3Mit158 | 3 | 117 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 158 | ||
Tssr35227 | 3 | 13 | - | TSS region | transcription start site region 35227 | |
Tssr35228 | 3 | 8 | - | TSS region | transcription start site region 35228 | |
Tssr35229 | 3 | 10 | - | TSS region | transcription start site region 35229 | |
Tssr31291 | 3 | 4 | + | TSS region | transcription start site region 31291 | |
Tssr31292 | 3 | 6 | + | TSS region | transcription start site region 31292 | |
Tssr31293 | 3 | 12 | + | TSS region | transcription start site region 31293 | |
C130083B21Rik | 3 | 3800 | unclassified gene | RIKEN cDNA C130083B21 gene | ||
Tssr31294 | 3 | 2 | + | TSS region | transcription start site region 31294 | |
Tssr31295 | 3 | 13 | + | TSS region | transcription start site region 31295 | |
Tssr31296 | 3 | 39 | + | TSS region | transcription start site region 31296 | |
Tssr31297 | 3 | 14 | + | TSS region | transcription start site region 31297 | |
Tssr31298 | 3 | 6 | + | TSS region | transcription start site region 31298 | |
Tssr31299 | 3 | 4 | + | TSS region | transcription start site region 31299 | |
Tssr31300 | 3 | 21 | + | TSS region | transcription start site region 31300 | |
Tssr31301 | 3 | 16 | + | TSS region | transcription start site region 31301 | |
Tssr31302 | 3 | 7 | + | TSS region | transcription start site region 31302 | |
Tssr31303 | 3 | 4 | + | TSS region | transcription start site region 31303 | |
Tssr31304 | 3 | 6 | + | TSS region | transcription start site region 31304 | |
Tssr35230 | 3 | 10 | - | TSS region | transcription start site region 35230 | |
Ntng1 | 3 | 363955 | - | protein coding gene | netrin G1 | |
Cpgi13717 | 3 | 222 | CpG island | CpG island 13717 | ||
Tssr35231 | 3 | 3 | - | TSS region | transcription start site region 35231 | |
Tssr35232 | 3 | 2 | - | TSS region | transcription start site region 35232 | |
Gm25681 | 3 | 105 | + | snRNA gene | predicted gene, 25681 | |
Cpgi13718 | 3 | 239 | CpG island | CpG island 13718 | ||
Gm12535 | 3 | 483 | + | pseudogene | predicted gene 12535 | |
Cpgi13719 | 3 | 1852 | CpG island | CpG island 13719 | ||
Tssr35233 | 3 | 14 | - | TSS region | transcription start site region 35233 | |
Tssr35234 | 3 | 14 | - | TSS region | transcription start site region 35234 | |
Tssr1022 | 3 | 4 | + | TSS region | transcription start site region 1022 | |
Tssr35235 | 3 | 12 | - | TSS region | transcription start site region 35235 | |
Tssr35236 | 3 | 17 | - | TSS region | transcription start site region 35236 | |
Tssr35237 | 3 | 11 | - | TSS region | transcription start site region 35237 | |
Tssr35238 | 3 | 17 | - | TSS region | transcription start site region 35238 | |
Tssr35239 | 3 | 56 | - | TSS region | transcription start site region 35239 | |
Tssr35240 | 3 | 11 | - | TSS region | transcription start site region 35240 | |
Tssr31305 | 3 | 4 | + | TSS region | transcription start site region 31305 | |
Ogrq1 | 3 | 25833010 | QTL | overall growth rate QTL 1 | ||
Pwbwq6 | 3 | 25833010 | QTL | post-weaning body weight QTL 6 | ||
Pwbwq7 | 3 | 25833010 | QTL | post-weaning body weight QTL 7 | ||
D3Mit123 | 3 | 257 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 123 | ||
Gm42516 | 3 | 766 | - | unclassified gene | predicted gene 42516 | |
Prmt6 | 3 | 4889 | - | protein coding gene | protein arginine N-methyltransferase 6 | |
Cpgi13720 | 3 | 1415 | CpG island | CpG island 13720 | ||
C130013H08Rik | 3 | 3691 | + | antisense lncRNA gene | RIKEN cDNA C130013H08 gene | |
Tssr31306 | 3 | 35 | + | TSS region | transcription start site region 31306 | |
Tssr31307 | 3 | 21 | + | TSS region | transcription start site region 31307 | |
Tssr35241 | 3 | 52 | - | TSS region | transcription start site region 35241 | |
Tssr35242 | 3 | 13 | - | TSS region | transcription start site region 35242 | |
Gm43405 | 3 | 336 | - | pseudogene | predicted gene 43405 | |
Gm19185 | 3 | 642 | + | pseudogene | predicted gene, 19185 | |
Gm43406 | 3 | 333 | - | pseudogene | predicted gene 43406 | |
Gm26076 | 3 | 104 | - | snRNA gene | predicted gene, 26076 | |
Gm43404 | 3 | 2533 | + | unclassified gene | predicted gene 43404 |