Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:108521438-108901445

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
5330417C22Rik 3 108455694 to 108536536 80842 - protein coding gene RIKEN cDNA 5330417C22 gene
Tssr35150 3 108530059 to 108530062 3 - TSS region transcription start site region 35150
Gm37859 3 108532648 to 108534820 2172 - unclassified gene predicted gene, 37859
Tssr31252 3 108534126 to 108534133 7 + TSS region transcription start site region 31252
Tssr31253 3 108534140 to 108534147 7 + TSS region transcription start site region 31253
Cpgi13703 3 108536366 to 108536909 543 CpG island CpG island 13703
Tssr35151 3 108536466 to 108536522 56 - TSS region transcription start site region 35151
Tssr31254 3 108537523 to 108537583 60 + TSS region transcription start site region 31254
1700013F07Rik 3 108537584 to 108544697 7113 + protein coding gene RIKEN cDNA 1700013F07 gene
Tssr31255 3 108537586 to 108537592 6 + TSS region transcription start site region 31255
Cpgi13704 3 108554100 to 108554871 771 CpG island CpG island 13704
Scarna2 3 108554342 to 108554402 60 - snoRNA gene small Cajal body-specific RNA 2
Tssr31256 3 108554604 to 108554660 56 + TSS region transcription start site region 31256
Tssr35152 3 108554737 to 108554753 16 - TSS region transcription start site region 35152
Gm43435 3 108555467 to 108556904 1437 + unclassified gene predicted gene 43435
Tmem167b 3 108556425 to 108562466 6041 - protein coding gene transmembrane protein 167B
Cpgi13705 3 108562123 to 108562693 570 CpG island CpG island 13705
Tssr35153 3 108562153 to 108562178 25 - TSS region transcription start site region 35153
Tssr35154 3 108562328 to 108562346 18 - TSS region transcription start site region 35154
Tssr35155 3 108562349 to 108562417 68 - TSS region transcription start site region 35155
Tssr35156 3 108562424 to 108562438 14 - TSS region transcription start site region 35156
Gm22860 3 108567310 to 108567383 73 - miRNA gene predicted gene, 22860
Cpgi13706 3 108571494 to 108571900 406 CpG island CpG island 13706
Taf13 3 108571699 to 108582068 10369 + protein coding gene TATA-box binding protein associated factor 13
Cpgi13707 3 108591042 to 108592249 1207 CpG island CpG island 13707
Wdr47 3 108591279 to 108645719 54440 + protein coding gene WD repeat domain 47
Tssr31257 3 108591322 to 108591414 92 + TSS region transcription start site region 31257
Tssr31258 3 108591467 to 108591489 22 + TSS region transcription start site region 31258
Tssr31259 3 108591495 to 108591517 22 + TSS region transcription start site region 31259
Tssr31260 3 108592434 to 108592438 4 + TSS region transcription start site region 31260
Gm12517 3 108602391 to 108602815 424 - pseudogene predicted gene 12517
Cpgi13708 3 108653753 to 108654428 675 CpG island CpG island 13708
Tssr35157 3 108653795 to 108653827 32 - TSS region transcription start site region 35157
Tssr31261 3 108653907 to 108653928 21 + TSS region transcription start site region 31261
Clcc1 3 108653913 to 108678840 24927 + protein coding gene chloride channel CLIC-like 1
Tssr31262 3 108653931 to 108653964 33 + TSS region transcription start site region 31262
Tssr31263 3 108653979 to 108653986 7 + TSS region transcription start site region 31263
Tssr31264 3 108655574 to 108655578 4 + TSS region transcription start site region 31264
D3Mit122 3 108660046 to 108660190 144 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 122
Gpsm2 3 108678638 to 108722309 43671 - protein coding gene G-protein signalling modulator 2 (AGS3-like, C. elegans)
Tssr35158 3 108686494 to 108686500 6 - TSS region transcription start site region 35158
Tssr35159 3 108704440 to 108704453 13 - TSS region transcription start site region 35159
Tssr35160 3 108704459 to 108704476 17 - TSS region transcription start site region 35160
Tssr35161 3 108704494 to 108704501 7 - TSS region transcription start site region 35161
Gm27244 3 108708908 to 108712653 3745 + antisense lncRNA gene predicted gene 27244
Tssr35162 3 108711397 to 108711406 9 - TSS region transcription start site region 35162
Tssr35163 3 108711417 to 108711430 13 - TSS region transcription start site region 35163
Tssr35164 3 108711438 to 108711445 7 - TSS region transcription start site region 35164
Tssr35165 3 108711454 to 108711457 3 - TSS region transcription start site region 35165
Cpgi13709 3 108721631 to 108722705 1074 CpG island CpG island 13709
Tssr35166 3 108722102 to 108722112 10 - TSS region transcription start site region 35166
Tssr35167 3 108722124 to 108722138 14 - TSS region transcription start site region 35167
Tssr35168 3 108722142 to 108722201 59 - TSS region transcription start site region 35168
Tssr35169 3 108722263 to 108722274 11 - TSS region transcription start site region 35169
Tssr35170 3 108722281 to 108722311 30 - TSS region transcription start site region 35170
Aknad1 3 108739658 to 108782309 42651 + protein coding gene AKNA domain containing 1
Tssr31265 3 108744366 to 108744410 44 + TSS region transcription start site region 31265
D3Mit343.2 3 108768319 to 108768485 166 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 343.2
D3Mit39 3 108769194 to 108769421 227 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 39
Tssr31266 3 108774883 to 108774902 19 + TSS region transcription start site region 31266
Tssr31267 3 108774921 to 108774930 9 + TSS region transcription start site region 31267
Stxbp3 3 108793180 to 108840502 47322 - protein coding gene syntaxin binding protein 3
Tssr35171 3 108798051 to 108798055 4 - TSS region transcription start site region 35171
Tssr35172 3 108818367 to 108818384 17 - TSS region transcription start site region 35172
Tssr35173 3 108825889 to 108825897 8 - TSS region transcription start site region 35173
Cpgi13710 3 108839963 to 108840758 795 CpG island CpG island 13710
Tssr35174 3 108840469 to 108840474 5 - TSS region transcription start site region 35174
Tssr35175 3 108840477 to 108840509 32 - TSS region transcription start site region 35175
Tssr35176 3 108840543 to 108840553 10 - TSS region transcription start site region 35176
Tssr35177 3 108845051 to 108845075 24 - TSS region transcription start site region 35177
Fndc7 3 108853678 to 108890008 36330 - protein coding gene fibronectin type III domain containing 7
Tssr35178 3 108855979 to 108855984 5 - TSS region transcription start site region 35178
Tssr31268 3 108856131 to 108856143 12 + TSS region transcription start site region 31268
Tssr35179 3 108858602 to 108858636 34 - TSS region transcription start site region 35179
Gm43097 3 108881823 to 108881973 150 + pseudogene predicted gene 43097
Tssr35180 3 108889799 to 108889808 9 - TSS region transcription start site region 35180
Tssr35181 3 108889827 to 108889830 3 - TSS region transcription start site region 35181
Tssr35182 3 108889867 to 108889894 27 - TSS region transcription start site region 35182
Tssr35183 3 108889912 to 108889917 5 - TSS region transcription start site region 35183
Tssr35184 3 108889990 to 108890031 41 - TSS region transcription start site region 35184