Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:108375016-108575034

52 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Mybphl	3	108364911 to 108380057	15146	+	protein coding gene	myosin binding protein H-like
Gm12522	3	108379277 to 108383741	4464	-	lncRNA gene	predicted gene 12522
Tssr35142	3	108382500 to 108382541	41	-	TSS region	transcription start site region 35142
Cpgi13699	3	108383466 to 108384136	670		CpG island	CpG island 13699
Tssr31246	3	108383829 to 108383886	57	+	TSS region	transcription start site region 31246
Psrc1	3	108383839 to 108388231	4392	+	protein coding gene	proline/serine-rich coiled-coil 1
Tssr31247	3	108383887 to 108383898	11	+	TSS region	transcription start site region 31247
Tssr31248	3	108383983 to 108384001	18	+	TSS region	transcription start site region 31248
Tssr31249	3	108384005 to 108384017	12	+	TSS region	transcription start site region 31249
Celsr2	3	108390851 to 108415552	24701	-	protein coding gene	cadherin, EGF LAG seven-pass G-type receptor 2
Cpgi13700	3	108406828 to 108407366	538		CpG island	CpG island 13700
Cpgi13701	3	108414906 to 108416389	1483		CpG island	CpG island 13701
Tssr31250	3	108415979 to 108415989	10	+	TSS region	transcription start site region 31250
Tssr35143	3	108416011 to 108416050	39	-	TSS region	transcription start site region 35143
Tssr35144	3	108416052 to 108416066	14	-	TSS region	transcription start site region 35144
Sars	3	108424865 to 108445209	20344	-	protein coding gene	seryl-aminoacyl-tRNA synthetase
Tssr35145	3	108439681 to 108439686	5	-	TSS region	transcription start site region 35145
Gm22942	3	108441330 to 108441453	123	+	snoRNA gene	predicted gene, 22942
Tssr31251	3	108444274 to 108444297	23	+	TSS region	transcription start site region 31251
Cpgi13702	3	108444704 to 108445378	674		CpG island	CpG island 13702
Tssr35146	3	108445147 to 108445178	31	-	TSS region	transcription start site region 35146
Tssr35147	3	108445183 to 108445211	28	-	TSS region	transcription start site region 35147
D3Mit105	3	108450602 to 108450714	112		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 105
Gm43438	3	108451270 to 108451648	378	-	pseudogene	predicted gene 43438
5330417C22Rik	3	108455694 to 108536536	80842	-	protein coding gene	RIKEN cDNA 5330417C22 gene
Tssr35148	3	108475016 to 108475034	18	-	TSS region	transcription start site region 35148
Tssr35149	3	108475046 to 108475066	20	-	TSS region	transcription start site region 35149
Gm23336	3	108498118 to 108498240	122	+	snRNA gene	predicted gene, 23336
D3Mit56	3	108507844 to 108507986	142		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 56
Tssr35150	3	108530059 to 108530062	3	-	TSS region	transcription start site region 35150
Gm37859	3	108532648 to 108534820	2172	-	unclassified gene	predicted gene, 37859
Tssr31252	3	108534126 to 108534133	7	+	TSS region	transcription start site region 31252
Tssr31253	3	108534140 to 108534147	7	+	TSS region	transcription start site region 31253
Cpgi13703	3	108536366 to 108536909	543		CpG island	CpG island 13703
Tssr35151	3	108536466 to 108536522	56	-	TSS region	transcription start site region 35151
Tssr31254	3	108537523 to 108537583	60	+	TSS region	transcription start site region 31254
1700013F07Rik	3	108537584 to 108544697	7113	+	protein coding gene	RIKEN cDNA 1700013F07 gene
Tssr31255	3	108537586 to 108537592	6	+	TSS region	transcription start site region 31255
Cpgi13704	3	108554100 to 108554871	771		CpG island	CpG island 13704
Scarna2	3	108554342 to 108554402	60	-	snoRNA gene	small Cajal body-specific RNA 2
Tssr31256	3	108554604 to 108554660	56	+	TSS region	transcription start site region 31256
Tssr35152	3	108554737 to 108554753	16	-	TSS region	transcription start site region 35152
Gm43435	3	108555467 to 108556904	1437	+	unclassified gene	predicted gene 43435
Tmem167b	3	108556425 to 108562466	6041	-	protein coding gene	transmembrane protein 167B
Cpgi13705	3	108562123 to 108562693	570		CpG island	CpG island 13705
Tssr35153	3	108562153 to 108562178	25	-	TSS region	transcription start site region 35153
Tssr35154	3	108562328 to 108562346	18	-	TSS region	transcription start site region 35154
Tssr35155	3	108562349 to 108562417	68	-	TSS region	transcription start site region 35155
Tssr35156	3	108562424 to 108562438	14	-	TSS region	transcription start site region 35156
Gm22860	3	108567310 to 108567383	73	-	miRNA gene	predicted gene, 22860
Cpgi13706	3	108571494 to 108571900	406		CpG island	CpG island 13706
Taf13	3	108571699 to 108582068	10369	+	protein coding gene	TATA-box binding protein associated factor 13