Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:108283839-108488231

42 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Cpgi13698	3	108283355 to 108284877	1522		CpG island	CpG island 13698
Gm12523	3	108283898 to 108284843	945	-	antisense lncRNA gene	predicted gene 12523
Tssr31239	3	108284063 to 108284074	11	+	TSS region	transcription start site region 31239
Sort1	3	108284082 to 108361511	77429	+	protein coding gene	sortilin 1
Tssr31240	3	108284089 to 108284100	11	+	TSS region	transcription start site region 31240
Tssr31241	3	108284103 to 108284142	39	+	TSS region	transcription start site region 31241
Tssr35139	3	108284537 to 108284547	10	-	TSS region	transcription start site region 35139
Tssr35140	3	108284550 to 108284579	29	-	TSS region	transcription start site region 35140
Tssr35141	3	108284613 to 108284622	9	-	TSS region	transcription start site region 35141
Gm43099	3	108287881 to 108293121	5240	+	unclassified gene	predicted gene 43099
Tssr31242	3	108312905 to 108312930	25	+	TSS region	transcription start site region 31242
Gm12525	3	108361551 to 108362256	705	+	lincRNA gene	predicted gene 12525
Tssr31243	3	108364882 to 108364911	29	+	TSS region	transcription start site region 31243
Mybphl	3	108364911 to 108380057	15146	+	protein coding gene	myosin binding protein H-like
Tssr31244	3	108364913 to 108364943	30	+	TSS region	transcription start site region 31244
Tssr31245	3	108364976 to 108364988	12	+	TSS region	transcription start site region 31245
Gm12522	3	108379277 to 108383741	4464	-	lncRNA gene	predicted gene 12522
Tssr35142	3	108382500 to 108382541	41	-	TSS region	transcription start site region 35142
Cpgi13699	3	108383466 to 108384136	670		CpG island	CpG island 13699
Tssr31246	3	108383829 to 108383886	57	+	TSS region	transcription start site region 31246
Psrc1	3	108383839 to 108388231	4392	+	protein coding gene	proline/serine-rich coiled-coil 1
Tssr31247	3	108383887 to 108383898	11	+	TSS region	transcription start site region 31247
Tssr31248	3	108383983 to 108384001	18	+	TSS region	transcription start site region 31248
Tssr31249	3	108384005 to 108384017	12	+	TSS region	transcription start site region 31249
Celsr2	3	108390851 to 108415552	24701	-	protein coding gene	cadherin, EGF LAG seven-pass G-type receptor 2
Cpgi13700	3	108406828 to 108407366	538		CpG island	CpG island 13700
Cpgi13701	3	108414906 to 108416389	1483		CpG island	CpG island 13701
Tssr31250	3	108415979 to 108415989	10	+	TSS region	transcription start site region 31250
Tssr35143	3	108416011 to 108416050	39	-	TSS region	transcription start site region 35143
Tssr35144	3	108416052 to 108416066	14	-	TSS region	transcription start site region 35144
Sars	3	108424865 to 108445209	20344	-	protein coding gene	seryl-aminoacyl-tRNA synthetase
Tssr35145	3	108439681 to 108439686	5	-	TSS region	transcription start site region 35145
Gm22942	3	108441330 to 108441453	123	+	snoRNA gene	predicted gene, 22942
Tssr31251	3	108444274 to 108444297	23	+	TSS region	transcription start site region 31251
Cpgi13702	3	108444704 to 108445378	674		CpG island	CpG island 13702
Tssr35146	3	108445147 to 108445178	31	-	TSS region	transcription start site region 35146
Tssr35147	3	108445183 to 108445211	28	-	TSS region	transcription start site region 35147
D3Mit105	3	108450602 to 108450714	112		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 105
Gm43438	3	108451270 to 108451648	378	-	pseudogene	predicted gene 43438
5330417C22Rik	3	108455694 to 108536536	80842	-	protein coding gene	RIKEN cDNA 5330417C22 gene
Tssr35148	3	108475016 to 108475034	18	-	TSS region	transcription start site region 35148
Tssr35149	3	108475046 to 108475066	20	-	TSS region	transcription start site region 35149