Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:108219082-108426511

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sypl2 3 108211472 to 108226648 15176 - protein coding gene synaptophysin-like 2
Cpgi13695 3 108225837 to 108226918 1081 CpG island CpG island 13695
Tssr35135 3 108226573 to 108226589 16 - TSS region transcription start site region 35135
Tssr35136 3 108226598 to 108226683 85 - TSS region transcription start site region 35136
Gm40123 3 108226808 to 108239470 12662 + lincRNA gene predicted gene, 40123
Gm12501 3 108239383 to 108239911 528 - pseudogene predicted gene 12501
Cpgi13696 3 108239553 to 108240192 639 CpG island CpG island 13696
1700010K24Rik 3 108248909 to 108256985 8076 - antisense lncRNA gene RIKEN cDNA 1700010K24 gene
Cpgi13697 3 108256681 to 108257643 962 CpG island CpG island 13697
Tssr35137 3 108256804 to 108256841 37 - TSS region transcription start site region 35137
Psma5 3 108256926 to 108279952 23026 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 5
Tssr35138 3 108256980 to 108257030 50 - TSS region transcription start site region 35138
Tssr1020 3 108257138 to 108257141 3 + TSS region transcription start site region 1020
Tssr31238 3 108257160 to 108257171 11 + TSS region transcription start site region 31238
Cpgi13698 3 108283355 to 108284877 1522 CpG island CpG island 13698
Gm12523 3 108283898 to 108284843 945 - antisense lncRNA gene predicted gene 12523
Tssr31239 3 108284063 to 108284074 11 + TSS region transcription start site region 31239
Sort1 3 108284082 to 108361511 77429 + protein coding gene sortilin 1
Tssr31240 3 108284089 to 108284100 11 + TSS region transcription start site region 31240
Tssr31241 3 108284103 to 108284142 39 + TSS region transcription start site region 31241
Tssr35139 3 108284537 to 108284547 10 - TSS region transcription start site region 35139
Tssr35140 3 108284550 to 108284579 29 - TSS region transcription start site region 35140
Tssr35141 3 108284613 to 108284622 9 - TSS region transcription start site region 35141
Gm43099 3 108287881 to 108293121 5240 + unclassified gene predicted gene 43099
Tssr31242 3 108312905 to 108312930 25 + TSS region transcription start site region 31242
Gm12525 3 108361551 to 108362256 705 + lincRNA gene predicted gene 12525
Tssr31243 3 108364882 to 108364911 29 + TSS region transcription start site region 31243
Mybphl 3 108364911 to 108380057 15146 + protein coding gene myosin binding protein H-like
Tssr31244 3 108364913 to 108364943 30 + TSS region transcription start site region 31244
Tssr31245 3 108364976 to 108364988 12 + TSS region transcription start site region 31245
Gm12522 3 108379277 to 108383741 4464 - lncRNA gene predicted gene 12522
Tssr35142 3 108382500 to 108382541 41 - TSS region transcription start site region 35142
Cpgi13699 3 108383466 to 108384136 670 CpG island CpG island 13699
Tssr31246 3 108383829 to 108383886 57 + TSS region transcription start site region 31246
Psrc1 3 108383839 to 108388231 4392 + protein coding gene proline/serine-rich coiled-coil 1
Tssr31247 3 108383887 to 108383898 11 + TSS region transcription start site region 31247
Tssr31248 3 108383983 to 108384001 18 + TSS region transcription start site region 31248
Tssr31249 3 108384005 to 108384017 12 + TSS region transcription start site region 31249
Celsr2 3 108390851 to 108415552 24701 - protein coding gene cadherin, EGF LAG seven-pass G-type receptor 2
Cpgi13700 3 108406828 to 108407366 538 CpG island CpG island 13700
Cpgi13701 3 108414906 to 108416389 1483 CpG island CpG island 13701
Tssr31250 3 108415979 to 108415989 10 + TSS region transcription start site region 31250
Tssr35143 3 108416011 to 108416050 39 - TSS region transcription start site region 35143
Tssr35144 3 108416052 to 108416066 14 - TSS region transcription start site region 35144
Sars 3 108424865 to 108445209 20344 - protein coding gene seryl-aminoacyl-tRNA synthetase