Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:108198979-109108986

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212 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cyb561d1 3 108195687 to 108201212 5525 - protein coding gene cytochrome b-561 domain containing 1
Tssr1019 3 108199916 to 108199926 10 + TSS region transcription start site region 1019
Tssr35130 3 108200415 to 108200445 30 - TSS region transcription start site region 35130
Cpgi13693 3 108200459 to 108201077 618 CpG island CpG island 13693
Tssr31237 3 108200599 to 108200629 30 + TSS region transcription start site region 31237
Tssr35131 3 108200807 to 108200858 51 - TSS region transcription start site region 35131
Atxn7l2 3 108202222 to 108210527 8305 - protein coding gene ataxin 7-like 2
Cpgi13694 3 108209869 to 108211233 1364 CpG island CpG island 13694
Tssr35132 3 108210438 to 108210502 64 - TSS region transcription start site region 35132
Sypl2 3 108211472 to 108226648 15176 - protein coding gene synaptophysin-like 2
Tssr35133 3 108213649 to 108213657 8 - TSS region transcription start site region 35133
Tssr35134 3 108217686 to 108217717 31 - TSS region transcription start site region 35134
Cpgi13695 3 108225837 to 108226918 1081 CpG island CpG island 13695
Tssr35135 3 108226573 to 108226589 16 - TSS region transcription start site region 35135
Tssr35136 3 108226598 to 108226683 85 - TSS region transcription start site region 35136
Gm40123 3 108226808 to 108239470 12662 + lincRNA gene predicted gene, 40123
Gm12501 3 108239383 to 108239911 528 - pseudogene predicted gene 12501
Cpgi13696 3 108239553 to 108240192 639 CpG island CpG island 13696
1700010K24Rik 3 108248909 to 108256985 8076 - antisense lncRNA gene RIKEN cDNA 1700010K24 gene
Cpgi13697 3 108256681 to 108257643 962 CpG island CpG island 13697
Tssr35137 3 108256804 to 108256841 37 - TSS region transcription start site region 35137
Psma5 3 108256926 to 108279952 23026 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 5
Tssr35138 3 108256980 to 108257030 50 - TSS region transcription start site region 35138
Tssr1020 3 108257138 to 108257141 3 + TSS region transcription start site region 1020
Tssr31238 3 108257160 to 108257171 11 + TSS region transcription start site region 31238
Cpgi13698 3 108283355 to 108284877 1522 CpG island CpG island 13698
Gm12523 3 108283898 to 108284843 945 - antisense lncRNA gene predicted gene 12523
Tssr31239 3 108284063 to 108284074 11 + TSS region transcription start site region 31239
Sort1 3 108284082 to 108361511 77429 + protein coding gene sortilin 1
Tssr31240 3 108284089 to 108284100 11 + TSS region transcription start site region 31240
Tssr31241 3 108284103 to 108284142 39 + TSS region transcription start site region 31241
Tssr35139 3 108284537 to 108284547 10 - TSS region transcription start site region 35139
Tssr35140 3 108284550 to 108284579 29 - TSS region transcription start site region 35140
Tssr35141 3 108284613 to 108284622 9 - TSS region transcription start site region 35141
Gm43099 3 108287881 to 108293121 5240 + unclassified gene predicted gene 43099
Tssr31242 3 108312905 to 108312930 25 + TSS region transcription start site region 31242
Gm12525 3 108361551 to 108362256 705 + lincRNA gene predicted gene 12525
Tssr31243 3 108364882 to 108364911 29 + TSS region transcription start site region 31243
Mybphl 3 108364911 to 108380057 15146 + protein coding gene myosin binding protein H-like
Tssr31244 3 108364913 to 108364943 30 + TSS region transcription start site region 31244
Tssr31245 3 108364976 to 108364988 12 + TSS region transcription start site region 31245
Gm12522 3 108379277 to 108383741 4464 - lncRNA gene predicted gene 12522
Tssr35142 3 108382500 to 108382541 41 - TSS region transcription start site region 35142
Cpgi13699 3 108383466 to 108384136 670 CpG island CpG island 13699
Tssr31246 3 108383829 to 108383886 57 + TSS region transcription start site region 31246
Psrc1 3 108383839 to 108388231 4392 + protein coding gene proline/serine-rich coiled-coil 1
Tssr31247 3 108383887 to 108383898 11 + TSS region transcription start site region 31247
Tssr31248 3 108383983 to 108384001 18 + TSS region transcription start site region 31248
Tssr31249 3 108384005 to 108384017 12 + TSS region transcription start site region 31249
Celsr2 3 108390851 to 108415552 24701 - protein coding gene cadherin, EGF LAG seven-pass G-type receptor 2
Cpgi13700 3 108406828 to 108407366 538 CpG island CpG island 13700
Cpgi13701 3 108414906 to 108416389 1483 CpG island CpG island 13701
Tssr31250 3 108415979 to 108415989 10 + TSS region transcription start site region 31250
Tssr35143 3 108416011 to 108416050 39 - TSS region transcription start site region 35143
Tssr35144 3 108416052 to 108416066 14 - TSS region transcription start site region 35144
Sars 3 108424865 to 108445209 20344 - protein coding gene seryl-aminoacyl-tRNA synthetase
Tssr35145 3 108439681 to 108439686 5 - TSS region transcription start site region 35145
Gm22942 3 108441330 to 108441453 123 + snoRNA gene predicted gene, 22942
Tssr31251 3 108444274 to 108444297 23 + TSS region transcription start site region 31251
Cpgi13702 3 108444704 to 108445378 674 CpG island CpG island 13702
Tssr35146 3 108445147 to 108445178 31 - TSS region transcription start site region 35146
Tssr35147 3 108445183 to 108445211 28 - TSS region transcription start site region 35147
D3Mit105 3 108450602 to 108450714 112 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 105
Gm43438 3 108451270 to 108451648 378 - pseudogene predicted gene 43438
5330417C22Rik 3 108455694 to 108536536 80842 - protein coding gene RIKEN cDNA 5330417C22 gene
Tssr35148 3 108475016 to 108475034 18 - TSS region transcription start site region 35148
Tssr35149 3 108475046 to 108475066 20 - TSS region transcription start site region 35149
Gm23336 3 108498118 to 108498240 122 + snRNA gene predicted gene, 23336
D3Mit56 3 108507844 to 108507986 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 56
Tssr35150 3 108530059 to 108530062 3 - TSS region transcription start site region 35150
Gm37859 3 108532648 to 108534820 2172 - unclassified gene predicted gene, 37859
Tssr31252 3 108534126 to 108534133 7 + TSS region transcription start site region 31252
Tssr31253 3 108534140 to 108534147 7 + TSS region transcription start site region 31253
Cpgi13703 3 108536366 to 108536909 543 CpG island CpG island 13703
Tssr35151 3 108536466 to 108536522 56 - TSS region transcription start site region 35151
Tssr31254 3 108537523 to 108537583 60 + TSS region transcription start site region 31254
1700013F07Rik 3 108537584 to 108544697 7113 + protein coding gene RIKEN cDNA 1700013F07 gene
Tssr31255 3 108537586 to 108537592 6 + TSS region transcription start site region 31255
Cpgi13704 3 108554100 to 108554871 771 CpG island CpG island 13704
Scarna2 3 108554342 to 108554402 60 - snoRNA gene small Cajal body-specific RNA 2
Tssr31256 3 108554604 to 108554660 56 + TSS region transcription start site region 31256
Tssr35152 3 108554737 to 108554753 16 - TSS region transcription start site region 35152
Gm43435 3 108555467 to 108556904 1437 + unclassified gene predicted gene 43435
Tmem167b 3 108556425 to 108562466 6041 - protein coding gene transmembrane protein 167B
Cpgi13705 3 108562123 to 108562693 570 CpG island CpG island 13705
Tssr35153 3 108562153 to 108562178 25 - TSS region transcription start site region 35153
Tssr35154 3 108562328 to 108562346 18 - TSS region transcription start site region 35154
Tssr35155 3 108562349 to 108562417 68 - TSS region transcription start site region 35155
Tssr35156 3 108562424 to 108562438 14 - TSS region transcription start site region 35156
Gm22860 3 108567310 to 108567383 73 - miRNA gene predicted gene, 22860
Cpgi13706 3 108571494 to 108571900 406 CpG island CpG island 13706
Taf13 3 108571699 to 108582068 10369 + protein coding gene TATA-box binding protein associated factor 13
Cpgi13707 3 108591042 to 108592249 1207 CpG island CpG island 13707
Wdr47 3 108591279 to 108645719 54440 + protein coding gene WD repeat domain 47
Tssr31257 3 108591322 to 108591414 92 + TSS region transcription start site region 31257
Tssr31258 3 108591467 to 108591489 22 + TSS region transcription start site region 31258
Tssr31259 3 108591495 to 108591517 22 + TSS region transcription start site region 31259
Tssr31260 3 108592434 to 108592438 4 + TSS region transcription start site region 31260
Gm12517 3 108602391 to 108602815 424 - pseudogene predicted gene 12517
Cpgi13708 3 108653753 to 108654428 675 CpG island CpG island 13708
Tssr35157 3 108653795 to 108653827 32 - TSS region transcription start site region 35157
Tssr31261 3 108653907 to 108653928 21 + TSS region transcription start site region 31261
Clcc1 3 108653913 to 108678840 24927 + protein coding gene chloride channel CLIC-like 1
Tssr31262 3 108653931 to 108653964 33 + TSS region transcription start site region 31262
Tssr31263 3 108653979 to 108653986 7 + TSS region transcription start site region 31263
Tssr31264 3 108655574 to 108655578 4 + TSS region transcription start site region 31264
D3Mit122 3 108660046 to 108660190 144 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 122
Gpsm2 3 108678638 to 108722309 43671 - protein coding gene G-protein signalling modulator 2 (AGS3-like, C. elegans)
Tssr35158 3 108686494 to 108686500 6 - TSS region transcription start site region 35158
Tssr35159 3 108704440 to 108704453 13 - TSS region transcription start site region 35159
Tssr35160 3 108704459 to 108704476 17 - TSS region transcription start site region 35160
Tssr35161 3 108704494 to 108704501 7 - TSS region transcription start site region 35161
Gm27244 3 108708908 to 108712653 3745 + antisense lncRNA gene predicted gene 27244
Tssr35162 3 108711397 to 108711406 9 - TSS region transcription start site region 35162
Tssr35163 3 108711417 to 108711430 13 - TSS region transcription start site region 35163
Tssr35164 3 108711438 to 108711445 7 - TSS region transcription start site region 35164
Tssr35165 3 108711454 to 108711457 3 - TSS region transcription start site region 35165
Cpgi13709 3 108721631 to 108722705 1074 CpG island CpG island 13709
Tssr35166 3 108722102 to 108722112 10 - TSS region transcription start site region 35166
Tssr35167 3 108722124 to 108722138 14 - TSS region transcription start site region 35167
Tssr35168 3 108722142 to 108722201 59 - TSS region transcription start site region 35168
Tssr35169 3 108722263 to 108722274 11 - TSS region transcription start site region 35169
Tssr35170 3 108722281 to 108722311 30 - TSS region transcription start site region 35170
Aknad1 3 108739658 to 108782309 42651 + protein coding gene AKNA domain containing 1
Tssr31265 3 108744366 to 108744410 44 + TSS region transcription start site region 31265
D3Mit343.2 3 108768319 to 108768485 166 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 343.2
D3Mit39 3 108769194 to 108769421 227 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 39
Tssr31266 3 108774883 to 108774902 19 + TSS region transcription start site region 31266
Tssr31267 3 108774921 to 108774930 9 + TSS region transcription start site region 31267
Stxbp3 3 108793180 to 108840502 47322 - protein coding gene syntaxin binding protein 3
Tssr35171 3 108798051 to 108798055 4 - TSS region transcription start site region 35171
Tssr35172 3 108818367 to 108818384 17 - TSS region transcription start site region 35172
Tssr35173 3 108825889 to 108825897 8 - TSS region transcription start site region 35173
Cpgi13710 3 108839963 to 108840758 795 CpG island CpG island 13710
Tssr35174 3 108840469 to 108840474 5 - TSS region transcription start site region 35174
Tssr35175 3 108840477 to 108840509 32 - TSS region transcription start site region 35175
Tssr35176 3 108840543 to 108840553 10 - TSS region transcription start site region 35176
Tssr35177 3 108845051 to 108845075 24 - TSS region transcription start site region 35177
Fndc7 3 108853678 to 108890008 36330 - protein coding gene fibronectin type III domain containing 7
Tssr35178 3 108855979 to 108855984 5 - TSS region transcription start site region 35178
Tssr31268 3 108856131 to 108856143 12 + TSS region transcription start site region 31268
Tssr35179 3 108858602 to 108858636 34 - TSS region transcription start site region 35179
Gm43097 3 108881823 to 108881973 150 + pseudogene predicted gene 43097
Tssr35180 3 108889799 to 108889808 9 - TSS region transcription start site region 35180
Tssr35181 3 108889827 to 108889830 3 - TSS region transcription start site region 35181
Tssr35182 3 108889867 to 108889894 27 - TSS region transcription start site region 35182
Tssr35183 3 108889912 to 108889917 5 - TSS region transcription start site region 35183
Tssr35184 3 108889990 to 108890031 41 - TSS region transcription start site region 35184
Prpf38b 3 108902805 to 108911727 8922 - protein coding gene PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
Tssr35185 3 108904194 to 108904208 14 - TSS region transcription start site region 35185
Tssr1021 3 108904227 to 108904244 17 - TSS region transcription start site region 1021
Tssr35186 3 108904316 to 108904325 9 - TSS region transcription start site region 35186
Tssr35187 3 108904352 to 108904360 8 - TSS region transcription start site region 35187
Tssr35188 3 108904443 to 108904463 20 - TSS region transcription start site region 35188
Tssr35189 3 108904497 to 108904508 11 - TSS region transcription start site region 35189
Tssr35190 3 108904535 to 108904549 14 - TSS region transcription start site region 35190
Tssr35191 3 108904556 to 108904563 7 - TSS region transcription start site region 35191
Tssr35192 3 108904564 to 108904584 20 - TSS region transcription start site region 35192
Tssr35193 3 108904594 to 108904603 9 - TSS region transcription start site region 35193
Tssr35194 3 108904684 to 108904695 11 - TSS region transcription start site region 35194
Tssr35195 3 108905300 to 108905343 43 - TSS region transcription start site region 35195
Tssr35196 3 108905356 to 108905369 13 - TSS region transcription start site region 35196
Tssr35197 3 108905523 to 108905526 3 - TSS region transcription start site region 35197
Tssr35198 3 108906980 to 108906984 4 - TSS region transcription start site region 35198
Tssr35199 3 108907803 to 108907824 21 - TSS region transcription start site region 35199
Tssr35200 3 108908053 to 108908066 13 - TSS region transcription start site region 35200
Tssr35201 3 108908071 to 108908089 18 - TSS region transcription start site region 35201
Cpgi13711 3 108910748 to 108912050 1302 CpG island CpG island 13711
Tssr35202 3 108911452 to 108911492 40 - TSS region transcription start site region 35202
Tssr35203 3 108911670 to 108911684 14 - TSS region transcription start site region 35203
Tssr35204 3 108911687 to 108911746 59 - TSS region transcription start site region 35204
Tssr31269 3 108911806 to 108911824 18 + TSS region transcription start site region 31269
Tssr31270 3 108911828 to 108911856 28 + TSS region transcription start site region 31270
Tssr31271 3 108912413 to 108912422 9 + TSS region transcription start site region 31271
Henmt1 3 108939873 to 108960774 20901 + protein coding gene HEN1 methyltransferase homolog 1 (Arabidopsis)
Cpgi13712 3 108939926 to 108940815 889 CpG island CpG island 13712
Gm9857 3 108940053 to 108940445 392 - protein coding gene predicted gene 9857
Tssr31272 3 108940076 to 108940107 31 + TSS region transcription start site region 31272
Tssr31273 3 108940108 to 108940125 17 + TSS region transcription start site region 31273
Tssr35205 3 108955644 to 108955655 11 - TSS region transcription start site region 35205
Fam102b 3 108970997 to 109027607 56610 - protein coding gene family with sequence similarity 102, member B
Tssr35206 3 108972248 to 108972252 4 - TSS region transcription start site region 35206
Tssr35207 3 108972305 to 108972366 61 - TSS region transcription start site region 35207
Tssr35208 3 108972411 to 108972447 36 - TSS region transcription start site region 35208
Tssr35209 3 108972616 to 108972631 15 - TSS region transcription start site region 35209
Tssr35210 3 108972761 to 108972772 11 - TSS region transcription start site region 35210
Tssr35211 3 108972807 to 108972828 21 - TSS region transcription start site region 35211
Tssr35212 3 108973281 to 108973300 19 - TSS region transcription start site region 35212
Tssr35213 3 108976491 to 108976498 7 - TSS region transcription start site region 35213
Tssr35214 3 108976550 to 108976566 16 - TSS region transcription start site region 35214
Tssr35215 3 108976567 to 108976586 19 - TSS region transcription start site region 35215
Tssr35216 3 108976693 to 108976702 9 - TSS region transcription start site region 35216
Gm43221 3 109000024 to 109002094 2070 + antisense lncRNA gene predicted gene 43221
Tssr35217 3 109009079 to 109009081 2 - TSS region transcription start site region 35217
Tssr35218 3 109009118 to 109009121 3 - TSS region transcription start site region 35218
Tssr35219 3 109017758 to 109017771 13 - TSS region transcription start site region 35219
Tssr35220 3 109021808 to 109021815 7 - TSS region transcription start site region 35220
Tssr35221 3 109021869 to 109021913 44 - TSS region transcription start site region 35221
Tssr35222 3 109022074 to 109022088 14 - TSS region transcription start site region 35222
Tssr35223 3 109022323 to 109022339 16 - TSS region transcription start site region 35223