Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:108161472-108276648

31 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm12524	3	108166443 to 108185907	19464	+	lincRNA gene	predicted gene 12524
Gm40122	3	108172661 to 108175370	2709	-	lncRNA gene	predicted gene, 40122
Cpgi13692	3	108185990 to 108187301	1311		CpG island	CpG island 13692
Tssr31235	3	108186332 to 108186407	75	+	TSS region	transcription start site region 31235
Amigo1	3	108186335 to 108192286	5951	+	protein coding gene	adhesion molecule with Ig like domain 1
Tssr31236	3	108186410 to 108186424	14	+	TSS region	transcription start site region 31236
Cyb561d1	3	108195687 to 108201212	5525	-	protein coding gene	cytochrome b-561 domain containing 1
Tssr1019	3	108199916 to 108199926	10	+	TSS region	transcription start site region 1019
Tssr35130	3	108200415 to 108200445	30	-	TSS region	transcription start site region 35130
Cpgi13693	3	108200459 to 108201077	618		CpG island	CpG island 13693
Tssr31237	3	108200599 to 108200629	30	+	TSS region	transcription start site region 31237
Tssr35131	3	108200807 to 108200858	51	-	TSS region	transcription start site region 35131
Atxn7l2	3	108202222 to 108210527	8305	-	protein coding gene	ataxin 7-like 2
Cpgi13694	3	108209869 to 108211233	1364		CpG island	CpG island 13694
Tssr35132	3	108210438 to 108210502	64	-	TSS region	transcription start site region 35132
Sypl2	3	108211472 to 108226648	15176	-	protein coding gene	synaptophysin-like 2
Tssr35133	3	108213649 to 108213657	8	-	TSS region	transcription start site region 35133
Tssr35134	3	108217686 to 108217717	31	-	TSS region	transcription start site region 35134
Cpgi13695	3	108225837 to 108226918	1081		CpG island	CpG island 13695
Tssr35135	3	108226573 to 108226589	16	-	TSS region	transcription start site region 35135
Tssr35136	3	108226598 to 108226683	85	-	TSS region	transcription start site region 35136
Gm40123	3	108226808 to 108239470	12662	+	lincRNA gene	predicted gene, 40123
Gm12501	3	108239383 to 108239911	528	-	pseudogene	predicted gene 12501
Cpgi13696	3	108239553 to 108240192	639		CpG island	CpG island 13696
1700010K24Rik	3	108248909 to 108256985	8076	-	antisense lncRNA gene	RIKEN cDNA 1700010K24 gene
Cpgi13697	3	108256681 to 108257643	962		CpG island	CpG island 13697
Tssr35137	3	108256804 to 108256841	37	-	TSS region	transcription start site region 35137
Psma5	3	108256926 to 108279952	23026	+	protein coding gene	proteasome (prosome, macropain) subunit, alpha type 5
Tssr35138	3	108256980 to 108257030	50	-	TSS region	transcription start site region 35138
Tssr1020	3	108257138 to 108257141	3	+	TSS region	transcription start site region 1020
Tssr31238	3	108257160 to 108257171	11	+	TSS region	transcription start site region 31238