Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:108048321-108254882

51 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Ampd2	3	108074062 to 108086651	12589	-	protein coding gene	adenosine monophosphate deaminase 2
Tssr35121	3	108081142 to 108081144	2	-	TSS region	transcription start site region 35121
Tssr35122	3	108082392 to 108082424	32	-	TSS region	transcription start site region 35122
Cpgi13687	3	108085117 to 108085523	406		CpG island	CpG island 13687
Tssr35123	3	108085346 to 108085412	66	-	TSS region	transcription start site region 35123
Tssr35124	3	108085422 to 108085438	16	-	TSS region	transcription start site region 35124
Gm12500	3	108085590 to 108088011	2421	+	antisense lncRNA gene	predicted gene 12500
Tssr31230	3	108086029 to 108086055	26	+	TSS region	transcription start site region 31230
Cpgi13688	3	108086236 to 108086818	582		CpG island	CpG island 13688
Tssr35125	3	108086590 to 108086707	117	-	TSS region	transcription start site region 35125
Gnat2	3	108092789 to 108101432	8643	+	protein coding gene	guanine nucleotide binding protein, alpha transducing 2
Etohcta4	3	108092789 to 108101432	8643		QTL	ethanol conditioned taste aversion 4
Tssr31231	3	108092851 to 108092858	7	+	TSS region	transcription start site region 31231
Tssr31232	3	108093052 to 108093062	10	+	TSS region	transcription start site region 31232
Tssr31233	3	108093109 to 108093120	11	+	TSS region	transcription start site region 31233
Gnai3	3	108107280 to 108146146	38866	-	protein coding gene	guanine nucleotide binding protein (G protein), alpha inhibiting 3
Tssr35126	3	108121180 to 108121189	9	-	TSS region	transcription start site region 35126
Tssr35127	3	108134688 to 108134692	4	-	TSS region	transcription start site region 35127
Cpgi13689	3	108134873 to 108135025	152		CpG island	CpG island 13689
Cpgi13690	3	108145655 to 108146396	741		CpG island	CpG island 13690
Tssr35128	3	108146080 to 108146150	70	-	TSS region	transcription start site region 35128
Tssr1018	3	108146175 to 108146196	21	+	TSS region	transcription start site region 1018
Tssr31234	3	108146200 to 108146223	23	+	TSS region	transcription start site region 31234
Gpr61	3	108148321 to 108154882	6561	-	protein coding gene	G protein-coupled receptor 61
Cpgi13691	3	108150456 to 108150914	458		CpG island	CpG island 13691
Tssr35129	3	108154871 to 108154908	37	-	TSS region	transcription start site region 35129
Gm12524	3	108166443 to 108185907	19464	+	lincRNA gene	predicted gene 12524
Gm40122	3	108172661 to 108175370	2709	-	lncRNA gene	predicted gene, 40122
Cpgi13692	3	108185990 to 108187301	1311		CpG island	CpG island 13692
Tssr31235	3	108186332 to 108186407	75	+	TSS region	transcription start site region 31235
Amigo1	3	108186335 to 108192286	5951	+	protein coding gene	adhesion molecule with Ig like domain 1
Tssr31236	3	108186410 to 108186424	14	+	TSS region	transcription start site region 31236
Cyb561d1	3	108195687 to 108201212	5525	-	protein coding gene	cytochrome b-561 domain containing 1
Tssr1019	3	108199916 to 108199926	10	+	TSS region	transcription start site region 1019
Tssr35130	3	108200415 to 108200445	30	-	TSS region	transcription start site region 35130
Cpgi13693	3	108200459 to 108201077	618		CpG island	CpG island 13693
Tssr31237	3	108200599 to 108200629	30	+	TSS region	transcription start site region 31237
Tssr35131	3	108200807 to 108200858	51	-	TSS region	transcription start site region 35131
Atxn7l2	3	108202222 to 108210527	8305	-	protein coding gene	ataxin 7-like 2
Cpgi13694	3	108209869 to 108211233	1364		CpG island	CpG island 13694
Tssr35132	3	108210438 to 108210502	64	-	TSS region	transcription start site region 35132
Sypl2	3	108211472 to 108226648	15176	-	protein coding gene	synaptophysin-like 2
Tssr35133	3	108213649 to 108213657	8	-	TSS region	transcription start site region 35133
Tssr35134	3	108217686 to 108217717	31	-	TSS region	transcription start site region 35134
Cpgi13695	3	108225837 to 108226918	1081		CpG island	CpG island 13695
Tssr35135	3	108226573 to 108226589	16	-	TSS region	transcription start site region 35135
Tssr35136	3	108226598 to 108226683	85	-	TSS region	transcription start site region 35136
Gm40123	3	108226808 to 108239470	12662	+	lincRNA gene	predicted gene, 40123
Gm12501	3	108239383 to 108239911	528	-	pseudogene	predicted gene 12501
Cpgi13696	3	108239553 to 108240192	639		CpG island	CpG island 13696
1700010K24Rik	3	108248909 to 108256985	8076	-	antisense lncRNA gene	RIKEN cDNA 1700010K24 gene