Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:108041330-108841453

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gstm4 3 108040408 to 108044894 4486 - protein coding gene glutathione S-transferase, mu 4
Tssr35119 3 108044685 to 108044738 53 - TSS region transcription start site region 35119
Cpgi13686 3 108044687 to 108045057 370 CpG island CpG island 13686
Tssr35120 3 108044801 to 108044882 81 - TSS region transcription start site region 35120
Ampd2 3 108074062 to 108086651 12589 - protein coding gene adenosine monophosphate deaminase 2
Tssr35121 3 108081142 to 108081144 2 - TSS region transcription start site region 35121
Tssr35122 3 108082392 to 108082424 32 - TSS region transcription start site region 35122
Cpgi13687 3 108085117 to 108085523 406 CpG island CpG island 13687
Tssr35123 3 108085346 to 108085412 66 - TSS region transcription start site region 35123
Tssr35124 3 108085422 to 108085438 16 - TSS region transcription start site region 35124
Gm12500 3 108085590 to 108088011 2421 + antisense lncRNA gene predicted gene 12500
Tssr31230 3 108086029 to 108086055 26 + TSS region transcription start site region 31230
Cpgi13688 3 108086236 to 108086818 582 CpG island CpG island 13688
Tssr35125 3 108086590 to 108086707 117 - TSS region transcription start site region 35125
Gnat2 3 108092789 to 108101432 8643 + protein coding gene guanine nucleotide binding protein, alpha transducing 2
Etohcta4 3 108092789 to 108101432 8643 QTL ethanol conditioned taste aversion 4
Tssr31231 3 108092851 to 108092858 7 + TSS region transcription start site region 31231
Tssr31232 3 108093052 to 108093062 10 + TSS region transcription start site region 31232
Tssr31233 3 108093109 to 108093120 11 + TSS region transcription start site region 31233
Gnai3 3 108107280 to 108146146 38866 - protein coding gene guanine nucleotide binding protein (G protein), alpha inhibiting 3
Tssr35126 3 108121180 to 108121189 9 - TSS region transcription start site region 35126
Tssr35127 3 108134688 to 108134692 4 - TSS region transcription start site region 35127
Cpgi13689 3 108134873 to 108135025 152 CpG island CpG island 13689
Cpgi13690 3 108145655 to 108146396 741 CpG island CpG island 13690
Tssr35128 3 108146080 to 108146150 70 - TSS region transcription start site region 35128
Tssr1018 3 108146175 to 108146196 21 + TSS region transcription start site region 1018
Tssr31234 3 108146200 to 108146223 23 + TSS region transcription start site region 31234
Gpr61 3 108148321 to 108154882 6561 - protein coding gene G protein-coupled receptor 61
Cpgi13691 3 108150456 to 108150914 458 CpG island CpG island 13691
Tssr35129 3 108154871 to 108154908 37 - TSS region transcription start site region 35129
Gm12524 3 108166443 to 108185907 19464 + lincRNA gene predicted gene 12524
Gm40122 3 108172661 to 108175370 2709 - lncRNA gene predicted gene, 40122
Cpgi13692 3 108185990 to 108187301 1311 CpG island CpG island 13692
Tssr31235 3 108186332 to 108186407 75 + TSS region transcription start site region 31235
Amigo1 3 108186335 to 108192286 5951 + protein coding gene adhesion molecule with Ig like domain 1
Tssr31236 3 108186410 to 108186424 14 + TSS region transcription start site region 31236
Cyb561d1 3 108195687 to 108201212 5525 - protein coding gene cytochrome b-561 domain containing 1
Tssr1019 3 108199916 to 108199926 10 + TSS region transcription start site region 1019
Tssr35130 3 108200415 to 108200445 30 - TSS region transcription start site region 35130
Cpgi13693 3 108200459 to 108201077 618 CpG island CpG island 13693
Tssr31237 3 108200599 to 108200629 30 + TSS region transcription start site region 31237
Tssr35131 3 108200807 to 108200858 51 - TSS region transcription start site region 35131
Atxn7l2 3 108202222 to 108210527 8305 - protein coding gene ataxin 7-like 2
Cpgi13694 3 108209869 to 108211233 1364 CpG island CpG island 13694
Tssr35132 3 108210438 to 108210502 64 - TSS region transcription start site region 35132
Sypl2 3 108211472 to 108226648 15176 - protein coding gene synaptophysin-like 2
Tssr35133 3 108213649 to 108213657 8 - TSS region transcription start site region 35133
Tssr35134 3 108217686 to 108217717 31 - TSS region transcription start site region 35134
Cpgi13695 3 108225837 to 108226918 1081 CpG island CpG island 13695
Tssr35135 3 108226573 to 108226589 16 - TSS region transcription start site region 35135
Tssr35136 3 108226598 to 108226683 85 - TSS region transcription start site region 35136
Gm40123 3 108226808 to 108239470 12662 + lincRNA gene predicted gene, 40123
Gm12501 3 108239383 to 108239911 528 - pseudogene predicted gene 12501
Cpgi13696 3 108239553 to 108240192 639 CpG island CpG island 13696
1700010K24Rik 3 108248909 to 108256985 8076 - antisense lncRNA gene RIKEN cDNA 1700010K24 gene
Cpgi13697 3 108256681 to 108257643 962 CpG island CpG island 13697
Tssr35137 3 108256804 to 108256841 37 - TSS region transcription start site region 35137
Psma5 3 108256926 to 108279952 23026 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 5
Tssr35138 3 108256980 to 108257030 50 - TSS region transcription start site region 35138
Tssr1020 3 108257138 to 108257141 3 + TSS region transcription start site region 1020
Tssr31238 3 108257160 to 108257171 11 + TSS region transcription start site region 31238
Cpgi13698 3 108283355 to 108284877 1522 CpG island CpG island 13698
Gm12523 3 108283898 to 108284843 945 - antisense lncRNA gene predicted gene 12523
Tssr31239 3 108284063 to 108284074 11 + TSS region transcription start site region 31239
Sort1 3 108284082 to 108361511 77429 + protein coding gene sortilin 1
Tssr31240 3 108284089 to 108284100 11 + TSS region transcription start site region 31240
Tssr31241 3 108284103 to 108284142 39 + TSS region transcription start site region 31241
Tssr35139 3 108284537 to 108284547 10 - TSS region transcription start site region 35139
Tssr35140 3 108284550 to 108284579 29 - TSS region transcription start site region 35140
Tssr35141 3 108284613 to 108284622 9 - TSS region transcription start site region 35141
Gm43099 3 108287881 to 108293121 5240 + unclassified gene predicted gene 43099
Tssr31242 3 108312905 to 108312930 25 + TSS region transcription start site region 31242
Gm12525 3 108361551 to 108362256 705 + lincRNA gene predicted gene 12525
Tssr31243 3 108364882 to 108364911 29 + TSS region transcription start site region 31243
Mybphl 3 108364911 to 108380057 15146 + protein coding gene myosin binding protein H-like
Tssr31244 3 108364913 to 108364943 30 + TSS region transcription start site region 31244
Tssr31245 3 108364976 to 108364988 12 + TSS region transcription start site region 31245
Gm12522 3 108379277 to 108383741 4464 - lncRNA gene predicted gene 12522
Tssr35142 3 108382500 to 108382541 41 - TSS region transcription start site region 35142
Cpgi13699 3 108383466 to 108384136 670 CpG island CpG island 13699
Tssr31246 3 108383829 to 108383886 57 + TSS region transcription start site region 31246
Psrc1 3 108383839 to 108388231 4392 + protein coding gene proline/serine-rich coiled-coil 1
Tssr31247 3 108383887 to 108383898 11 + TSS region transcription start site region 31247
Tssr31248 3 108383983 to 108384001 18 + TSS region transcription start site region 31248
Tssr31249 3 108384005 to 108384017 12 + TSS region transcription start site region 31249
Celsr2 3 108390851 to 108415552 24701 - protein coding gene cadherin, EGF LAG seven-pass G-type receptor 2
Cpgi13700 3 108406828 to 108407366 538 CpG island CpG island 13700
Cpgi13701 3 108414906 to 108416389 1483 CpG island CpG island 13701
Tssr31250 3 108415979 to 108415989 10 + TSS region transcription start site region 31250
Tssr35143 3 108416011 to 108416050 39 - TSS region transcription start site region 35143
Tssr35144 3 108416052 to 108416066 14 - TSS region transcription start site region 35144
Sars 3 108424865 to 108445209 20344 - protein coding gene seryl-aminoacyl-tRNA synthetase
Tssr35145 3 108439681 to 108439686 5 - TSS region transcription start site region 35145
Gm22942 3 108441330 to 108441453 123 + snoRNA gene predicted gene, 22942
Tssr31251 3 108444274 to 108444297 23 + TSS region transcription start site region 31251
Cpgi13702 3 108444704 to 108445378 674 CpG island CpG island 13702
Tssr35146 3 108445147 to 108445178 31 - TSS region transcription start site region 35146
Tssr35147 3 108445183 to 108445211 28 - TSS region transcription start site region 35147
D3Mit105 3 108450602 to 108450714 112 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 105
Gm43438 3 108451270 to 108451648 378 - pseudogene predicted gene 43438
5330417C22Rik 3 108455694 to 108536536 80842 - protein coding gene RIKEN cDNA 5330417C22 gene
Tssr35148 3 108475016 to 108475034 18 - TSS region transcription start site region 35148
Tssr35149 3 108475046 to 108475066 20 - TSS region transcription start site region 35149
Gm23336 3 108498118 to 108498240 122 + snRNA gene predicted gene, 23336
D3Mit56 3 108507844 to 108507986 142 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 56
Tssr35150 3 108530059 to 108530062 3 - TSS region transcription start site region 35150
Gm37859 3 108532648 to 108534820 2172 - unclassified gene predicted gene, 37859
Tssr31252 3 108534126 to 108534133 7 + TSS region transcription start site region 31252
Tssr31253 3 108534140 to 108534147 7 + TSS region transcription start site region 31253
Cpgi13703 3 108536366 to 108536909 543 CpG island CpG island 13703
Tssr35151 3 108536466 to 108536522 56 - TSS region transcription start site region 35151
Tssr31254 3 108537523 to 108537583 60 + TSS region transcription start site region 31254
1700013F07Rik 3 108537584 to 108544697 7113 + protein coding gene RIKEN cDNA 1700013F07 gene
Tssr31255 3 108537586 to 108537592 6 + TSS region transcription start site region 31255
Cpgi13704 3 108554100 to 108554871 771 CpG island CpG island 13704
Scarna2 3 108554342 to 108554402 60 - snoRNA gene small Cajal body-specific RNA 2
Tssr31256 3 108554604 to 108554660 56 + TSS region transcription start site region 31256
Tssr35152 3 108554737 to 108554753 16 - TSS region transcription start site region 35152
Gm43435 3 108555467 to 108556904 1437 + unclassified gene predicted gene 43435
Tmem167b 3 108556425 to 108562466 6041 - protein coding gene transmembrane protein 167B
Cpgi13705 3 108562123 to 108562693 570 CpG island CpG island 13705
Tssr35153 3 108562153 to 108562178 25 - TSS region transcription start site region 35153
Tssr35154 3 108562328 to 108562346 18 - TSS region transcription start site region 35154
Tssr35155 3 108562349 to 108562417 68 - TSS region transcription start site region 35155
Tssr35156 3 108562424 to 108562438 14 - TSS region transcription start site region 35156
Gm22860 3 108567310 to 108567383 73 - miRNA gene predicted gene, 22860
Cpgi13706 3 108571494 to 108571900 406 CpG island CpG island 13706
Taf13 3 108571699 to 108582068 10369 + protein coding gene TATA-box binding protein associated factor 13
Cpgi13707 3 108591042 to 108592249 1207 CpG island CpG island 13707
Wdr47 3 108591279 to 108645719 54440 + protein coding gene WD repeat domain 47
Tssr31257 3 108591322 to 108591414 92 + TSS region transcription start site region 31257
Tssr31258 3 108591467 to 108591489 22 + TSS region transcription start site region 31258
Tssr31259 3 108591495 to 108591517 22 + TSS region transcription start site region 31259
Tssr31260 3 108592434 to 108592438 4 + TSS region transcription start site region 31260
Gm12517 3 108602391 to 108602815 424 - pseudogene predicted gene 12517
Cpgi13708 3 108653753 to 108654428 675 CpG island CpG island 13708
Tssr35157 3 108653795 to 108653827 32 - TSS region transcription start site region 35157
Tssr31261 3 108653907 to 108653928 21 + TSS region transcription start site region 31261
Clcc1 3 108653913 to 108678840 24927 + protein coding gene chloride channel CLIC-like 1
Tssr31262 3 108653931 to 108653964 33 + TSS region transcription start site region 31262
Tssr31263 3 108653979 to 108653986 7 + TSS region transcription start site region 31263
Tssr31264 3 108655574 to 108655578 4 + TSS region transcription start site region 31264
D3Mit122 3 108660046 to 108660190 144 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 122
Gpsm2 3 108678638 to 108722309 43671 - protein coding gene G-protein signalling modulator 2 (AGS3-like, C. elegans)
Tssr35158 3 108686494 to 108686500 6 - TSS region transcription start site region 35158
Tssr35159 3 108704440 to 108704453 13 - TSS region transcription start site region 35159
Tssr35160 3 108704459 to 108704476 17 - TSS region transcription start site region 35160
Tssr35161 3 108704494 to 108704501 7 - TSS region transcription start site region 35161
Gm27244 3 108708908 to 108712653 3745 + antisense lncRNA gene predicted gene 27244
Tssr35162 3 108711397 to 108711406 9 - TSS region transcription start site region 35162
Tssr35163 3 108711417 to 108711430 13 - TSS region transcription start site region 35163
Tssr35164 3 108711438 to 108711445 7 - TSS region transcription start site region 35164
Tssr35165 3 108711454 to 108711457 3 - TSS region transcription start site region 35165
Cpgi13709 3 108721631 to 108722705 1074 CpG island CpG island 13709
Tssr35166 3 108722102 to 108722112 10 - TSS region transcription start site region 35166
Tssr35167 3 108722124 to 108722138 14 - TSS region transcription start site region 35167
Tssr35168 3 108722142 to 108722201 59 - TSS region transcription start site region 35168
Tssr35169 3 108722263 to 108722274 11 - TSS region transcription start site region 35169
Tssr35170 3 108722281 to 108722311 30 - TSS region transcription start site region 35170
Aknad1 3 108739658 to 108782309 42651 + protein coding gene AKNA domain containing 1
Tssr31265 3 108744366 to 108744410 44 + TSS region transcription start site region 31265
D3Mit343.2 3 108768319 to 108768485 166 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 343.2
D3Mit39 3 108769194 to 108769421 227 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 39
Tssr31266 3 108774883 to 108774902 19 + TSS region transcription start site region 31266
Tssr31267 3 108774921 to 108774930 9 + TSS region transcription start site region 31267
Stxbp3 3 108793180 to 108840502 47322 - protein coding gene syntaxin binding protein 3
Tssr35171 3 108798051 to 108798055 4 - TSS region transcription start site region 35171
Tssr35172 3 108818367 to 108818384 17 - TSS region transcription start site region 35172
Tssr35173 3 108825889 to 108825897 8 - TSS region transcription start site region 35173
Cpgi13710 3 108839963 to 108840758 795 CpG island CpG island 13710
Tssr35174 3 108840469 to 108840474 5 - TSS region transcription start site region 35174
Tssr35175 3 108840477 to 108840509 32 - TSS region transcription start site region 35175
Tssr35176 3 108840543 to 108840553 10 - TSS region transcription start site region 35176