Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:107987789-108206432

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm43746 3 107999443 to 107999845 402 - pseudogene predicted gene 43746
Gstm1 3 108012255 to 108017973 5718 - protein coding gene glutathione S-transferase, mu 1
Tssr35108 3 108012447 to 108012462 15 - TSS region transcription start site region 35108
Tssr35109 3 108012559 to 108012572 13 - TSS region transcription start site region 35109
Tssr35110 3 108012670 to 108012709 39 - TSS region transcription start site region 35110
Tssr35111 3 108012735 to 108012776 41 - TSS region transcription start site region 35111
Cpgi13685 3 108017419 to 108018207 788 CpG island CpG island 13685
Tssr35112 3 108017431 to 108017441 10 - TSS region transcription start site region 35112
Tssr35113 3 108017442 to 108017458 16 - TSS region transcription start site region 35113
Tssr35114 3 108017460 to 108017470 10 - TSS region transcription start site region 35114
Tssr35115 3 108017655 to 108017662 7 - TSS region transcription start site region 35115
Tssr35116 3 108017811 to 108017826 15 - TSS region transcription start site region 35116
Tssr35117 3 108017843 to 108017862 19 - TSS region transcription start site region 35117
Tssr35118 3 108017877 to 108017884 7 - TSS region transcription start site region 35118
Gm12502 3 108019885 to 108020328 443 + pseudogene predicted gene 12502
Gm12498 3 108020417 to 108025943 5526 - lincRNA gene predicted gene 12498
D3Mit285 3 108024847 to 108024956 109 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 285
Gm12499 3 108029600 to 108031361 1761 - pseudogene predicted gene 12499
Gm36498 3 108030832 to 108036961 6129 - lncRNA gene predicted gene, 36498
Gm25592 3 108034026 to 108034156 130 + snoRNA gene predicted gene, 25592
Gstm4 3 108040408 to 108044894 4486 - protein coding gene glutathione S-transferase, mu 4
Tssr35119 3 108044685 to 108044738 53 - TSS region transcription start site region 35119
Cpgi13686 3 108044687 to 108045057 370 CpG island CpG island 13686
Tssr35120 3 108044801 to 108044882 81 - TSS region transcription start site region 35120
Ampd2 3 108074062 to 108086651 12589 - protein coding gene adenosine monophosphate deaminase 2
Tssr35121 3 108081142 to 108081144 2 - TSS region transcription start site region 35121
Tssr35122 3 108082392 to 108082424 32 - TSS region transcription start site region 35122
Cpgi13687 3 108085117 to 108085523 406 CpG island CpG island 13687
Tssr35123 3 108085346 to 108085412 66 - TSS region transcription start site region 35123
Tssr35124 3 108085422 to 108085438 16 - TSS region transcription start site region 35124
Gm12500 3 108085590 to 108088011 2421 + antisense lncRNA gene predicted gene 12500
Tssr31230 3 108086029 to 108086055 26 + TSS region transcription start site region 31230
Cpgi13688 3 108086236 to 108086818 582 CpG island CpG island 13688
Tssr35125 3 108086590 to 108086707 117 - TSS region transcription start site region 35125
Etohcta4 3 108092789 to 108101432 8643 QTL ethanol conditioned taste aversion 4
Gnat2 3 108092789 to 108101432 8643 + protein coding gene guanine nucleotide binding protein, alpha transducing 2
Tssr31231 3 108092851 to 108092858 7 + TSS region transcription start site region 31231
Tssr31232 3 108093052 to 108093062 10 + TSS region transcription start site region 31232
Tssr31233 3 108093109 to 108093120 11 + TSS region transcription start site region 31233
Gnai3 3 108107280 to 108146146 38866 - protein coding gene guanine nucleotide binding protein (G protein), alpha inhibiting 3
Tssr35126 3 108121180 to 108121189 9 - TSS region transcription start site region 35126
Tssr35127 3 108134688 to 108134692 4 - TSS region transcription start site region 35127
Cpgi13689 3 108134873 to 108135025 152 CpG island CpG island 13689
Cpgi13690 3 108145655 to 108146396 741 CpG island CpG island 13690
Tssr35128 3 108146080 to 108146150 70 - TSS region transcription start site region 35128
Tssr1018 3 108146175 to 108146196 21 + TSS region transcription start site region 1018
Tssr31234 3 108146200 to 108146223 23 + TSS region transcription start site region 31234
Gpr61 3 108148321 to 108154882 6561 - protein coding gene G protein-coupled receptor 61
Cpgi13691 3 108150456 to 108150914 458 CpG island CpG island 13691
Tssr35129 3 108154871 to 108154908 37 - TSS region transcription start site region 35129
Gm12524 3 108166443 to 108185907 19464 + lincRNA gene predicted gene 12524
Gm40122 3 108172661 to 108175370 2709 - lncRNA gene predicted gene, 40122
Cpgi13692 3 108185990 to 108187301 1311 CpG island CpG island 13692
Tssr31235 3 108186332 to 108186407 75 + TSS region transcription start site region 31235
Amigo1 3 108186335 to 108192286 5951 + protein coding gene adhesion molecule with Ig like domain 1
Tssr31236 3 108186410 to 108186424 14 + TSS region transcription start site region 31236
Cyb561d1 3 108195687 to 108201212 5525 - protein coding gene cytochrome b-561 domain containing 1
Tssr1019 3 108199916 to 108199926 10 + TSS region transcription start site region 1019
Tssr35130 3 108200415 to 108200445 30 - TSS region transcription start site region 35130
Cpgi13693 3 108200459 to 108201077 618 CpG island CpG island 13693
Tssr31237 3 108200599 to 108200629 30 + TSS region transcription start site region 31237
Tssr35131 3 108200807 to 108200858 51 - TSS region transcription start site region 35131
Atxn7l2 3 108202222 to 108210527 8305 - protein coding gene ataxin 7-like 2