Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:107574074-107924096

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi13677 3 107582737 to 107583625 888 CpG island CpG island 13677
Cpgi13678 3 107594790 to 107597198 2408 CpG island CpG island 13678
Alx3 3 107595031 to 107605776 10745 + protein coding gene aristaless-like homeobox 3
Tssr31211 3 107595138 to 107595164 26 + TSS region transcription start site region 31211
Tssr31212 3 107600433 to 107600441 8 + TSS region transcription start site region 31212
Strip1 3 107612532 to 107631694 19162 - protein coding gene striatin interacting protein 1
Cpgi13679 3 107630830 to 107631954 1124 CpG island CpG island 13679
Gm10961 3 107631322 to 107633090 1768 + unclassified gene predicted gene 10961
Tssr35072 3 107631681 to 107631705 24 - TSS region transcription start site region 35072
Ahcyl1 3 107663120 to 107696548 33428 - protein coding gene S-adenosylhomocysteine hydrolase-like 1
Tssr35073 3 107664371 to 107664399 28 - TSS region transcription start site region 35073
Tssr35074 3 107665074 to 107665119 45 - TSS region transcription start site region 35074
Tssr35075 3 107667698 to 107667706 8 - TSS region transcription start site region 35075
Tssr35076 3 107670571 to 107670575 4 - TSS region transcription start site region 35076
Tssr35077 3 107674178 to 107674202 24 - TSS region transcription start site region 35077
Cpgi13680 3 107695768 to 107696921 1153 CpG island CpG island 13680
Tssr35078 3 107696205 to 107696216 11 - TSS region transcription start site region 35078
Tssr1013 3 107696269 to 107696280 11 - TSS region transcription start site region 1013
Tssr35079 3 107696345 to 107696348 3 - TSS region transcription start site region 35079
Tssr35080 3 107696462 to 107696574 112 - TSS region transcription start site region 35080
Gm40121 3 107696658 to 107812951 116293 + lncRNA gene predicted gene, 40121
Csf1 3 107741048 to 107760469 19421 - protein coding gene colony stimulating factor 1 (macrophage)
Tssr35081 3 107741466 to 107741496 30 - TSS region transcription start site region 35081
Tssr35082 3 107742558 to 107742595 37 - TSS region transcription start site region 35082
Tssr35083 3 107749074 to 107749096 22 - TSS region transcription start site region 35083
Tssr31213 3 107753780 to 107753801 21 + TSS region transcription start site region 31213
Tssr35084 3 107753811 to 107753839 28 - TSS region transcription start site region 35084
D3Mit104.3 3 107759348 to 107759457 109 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104.3
D3Mit104 3 107759435 to 107759527 92 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104
D3Mit104.2 3 107759522 to 107759678 156 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104.2
Cpgi13681 3 107759791 to 107760618 827 CpG island CpG island 13681
Tssr1014 3 107760172 to 107760182 10 - TSS region transcription start site region 1014
Tssr35085 3 107760187 to 107760227 40 - TSS region transcription start site region 35085
Tssr35086 3 107760234 to 107760249 15 - TSS region transcription start site region 35086
Tssr1015 3 107760258 to 107760282 24 - TSS region transcription start site region 1015
D3Mit104.1 3 107760371 to 107760614 243 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104.1
Gm43233 3 107781856 to 107782471 615 + pseudogene predicted gene 43233
Tssr35087 3 107783466 to 107783470 4 - TSS region transcription start site region 35087
Gm36211 3 107820221 to 107833539 13318 - lincRNA gene predicted gene, 36211
Tssr35088 3 107829584 to 107829599 15 - TSS region transcription start site region 35088
Tssr35089 3 107852806 to 107852817 11 - TSS region transcription start site region 35089
Tssr1016 3 107852840 to 107852848 8 - TSS region transcription start site region 1016
Tssr1017 3 107852851 to 107852860 9 - TSS region transcription start site region 1017
Tssr31214 3 107853139 to 107853150 11 + TSS region transcription start site region 31214
Gm5075 3 107868022 to 107868643 621 - pseudogene predicted gene 5075
Cpgi13682 3 107868327 to 107868719 392 CpG island CpG island 13682
Cpgi13683 3 107873458 to 107873671 213 CpG island CpG island 13683
Tssr31215 3 107873842 to 107873877 35 + TSS region transcription start site region 31215
Tssr31216 3 107873880 to 107873887 7 + TSS region transcription start site region 31216
Tssr31217 3 107873898 to 107873904 6 + TSS region transcription start site region 31217
Tssr31218 3 107874794 to 107874796 2 + TSS region transcription start site region 31218
4930554G22Rik 3 107874795 to 107875480 685 + unclassified gene RIKEN cDNA 4930554G22 gene
Tssr31219 3 107877105 to 107877123 18 + TSS region transcription start site region 31219
Tssr31220 3 107877227 to 107877252 25 + TSS region transcription start site region 31220
Eps8l3 3 107877229 to 107892900 15671 + protein coding gene EPS8-like 3
Tssr31221 3 107884786 to 107884811 25 + TSS region transcription start site region 31221
Tssr31222 3 107885934 to 107885939 5 + TSS region transcription start site region 31222
Gm43745 3 107885966 to 107887848 1882 + unclassified gene predicted gene 43745
4933431E20Rik 3 107888850 to 107896213 7363 - antisense lncRNA gene RIKEN cDNA 4933431E20 gene
Cpgi13684 3 107895632 to 107896355 723 CpG island CpG island 13684
Tssr35090 3 107895743 to 107895750 7 - TSS region transcription start site region 35090
Tssr35091 3 107895754 to 107895805 51 - TSS region transcription start site region 35091
Tssr35092 3 107895806 to 107895817 11 - TSS region transcription start site region 35092
Tssr31223 3 107895831 to 107895844 13 + TSS region transcription start site region 31223
Tssr31224 3 107895849 to 107895901 52 + TSS region transcription start site region 31224
Gstm5 3 107895854 to 107898685 2831 + protein coding gene glutathione S-transferase, mu 5
Tssr31225 3 107895912 to 107895913 1 + TSS region transcription start site region 31225
Tssr31226 3 107895916 to 107895931 15 + TSS region transcription start site region 31226
Tssr31227 3 107896265 to 107896314 49 + TSS region transcription start site region 31227
Tssr31228 3 107897283 to 107897313 30 + TSS region transcription start site region 31228
Gm9515 3 107908796 to 107911320 2524 - pseudogene predicted gene 9515
Tssr35093 3 107911278 to 107911300 22 - TSS region transcription start site region 35093
Gm12489 3 107919662 to 107919809 147 + pseudogene predicted gene 12489