Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:107563120-107796548

38 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Cpgi13677	3	107582737 to 107583625	888		CpG island	CpG island 13677
Cpgi13678	3	107594790 to 107597198	2408		CpG island	CpG island 13678
Alx3	3	107595031 to 107605776	10745	+	protein coding gene	aristaless-like homeobox 3
Tssr31211	3	107595138 to 107595164	26	+	TSS region	transcription start site region 31211
Tssr31212	3	107600433 to 107600441	8	+	TSS region	transcription start site region 31212
Strip1	3	107612532 to 107631694	19162	-	protein coding gene	striatin interacting protein 1
Cpgi13679	3	107630830 to 107631954	1124		CpG island	CpG island 13679
Gm10961	3	107631322 to 107633090	1768	+	unclassified gene	predicted gene 10961
Tssr35072	3	107631681 to 107631705	24	-	TSS region	transcription start site region 35072
Ahcyl1	3	107663120 to 107696548	33428	-	protein coding gene	S-adenosylhomocysteine hydrolase-like 1
Tssr35073	3	107664371 to 107664399	28	-	TSS region	transcription start site region 35073
Tssr35074	3	107665074 to 107665119	45	-	TSS region	transcription start site region 35074
Tssr35075	3	107667698 to 107667706	8	-	TSS region	transcription start site region 35075
Tssr35076	3	107670571 to 107670575	4	-	TSS region	transcription start site region 35076
Tssr35077	3	107674178 to 107674202	24	-	TSS region	transcription start site region 35077
Cpgi13680	3	107695768 to 107696921	1153		CpG island	CpG island 13680
Tssr35078	3	107696205 to 107696216	11	-	TSS region	transcription start site region 35078
Tssr1013	3	107696269 to 107696280	11	-	TSS region	transcription start site region 1013
Tssr35079	3	107696345 to 107696348	3	-	TSS region	transcription start site region 35079
Tssr35080	3	107696462 to 107696574	112	-	TSS region	transcription start site region 35080
Gm40121	3	107696658 to 107812951	116293	+	lncRNA gene	predicted gene, 40121
Csf1	3	107741048 to 107760469	19421	-	protein coding gene	colony stimulating factor 1 (macrophage)
Tssr35081	3	107741466 to 107741496	30	-	TSS region	transcription start site region 35081
Tssr35082	3	107742558 to 107742595	37	-	TSS region	transcription start site region 35082
Tssr35083	3	107749074 to 107749096	22	-	TSS region	transcription start site region 35083
Tssr31213	3	107753780 to 107753801	21	+	TSS region	transcription start site region 31213
Tssr35084	3	107753811 to 107753839	28	-	TSS region	transcription start site region 35084
D3Mit104.3	3	107759348 to 107759457	109		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 104.3
D3Mit104	3	107759435 to 107759527	92		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 104
D3Mit104.2	3	107759522 to 107759678	156		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 104.2
Cpgi13681	3	107759791 to 107760618	827		CpG island	CpG island 13681
Tssr1014	3	107760172 to 107760182	10	-	TSS region	transcription start site region 1014
Tssr35085	3	107760187 to 107760227	40	-	TSS region	transcription start site region 35085
Tssr35086	3	107760234 to 107760249	15	-	TSS region	transcription start site region 35086
Tssr1015	3	107760258 to 107760282	24	-	TSS region	transcription start site region 1015
D3Mit104.1	3	107760371 to 107760614	243		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 104.1
Gm43233	3	107781856 to 107782471	615	+	pseudogene	predicted gene 43233
Tssr35087	3	107783466 to 107783470	4	-	TSS region	transcription start site region 35087