Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:107334790-107857198

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi13674 3 107342877 to 107343267 390 CpG island CpG island 13674
Tssr31206 3 107342890 to 107342895 5 + TSS region transcription start site region 31206
Gm5279 3 107342964 to 107343674 710 + pseudogene predicted gene 5279
Gm35700 3 107364827 to 107373106 8279 + lncRNA gene predicted gene, 35700
Tssr31207 3 107368376 to 107368383 7 + TSS region transcription start site region 31207
Tssr31208 3 107368384 to 107368389 5 + TSS region transcription start site region 31208
Tssr31209 3 107368419 to 107368429 10 + TSS region transcription start site region 31209
Gm40120 3 107380809 to 107382559 1750 + lncRNA gene predicted gene, 40120
Gm24383 3 107415863 to 107416195 332 - unclassified non-coding RNA gene predicted gene, 24383
Kcnc4 3 107438298 to 107458925 20627 - protein coding gene potassium voltage gated channel, Shaw-related subfamily, member 4
A330043J11Rik 3 107440340 to 107442975 2635 unclassified gene RIKEN cDNA A330043J11 gene
Cpgi13675 3 107457974 to 107460761 2787 CpG island CpG island 13675
Tssr35061 3 107458895 to 107458920 25 - TSS region transcription start site region 35061
Tssr35062 3 107458922 to 107458975 53 - TSS region transcription start site region 35062
Tssr35063 3 107459691 to 107459716 25 - TSS region transcription start site region 35063
Tssr35064 3 107460237 to 107460313 76 - TSS region transcription start site region 35064
Tssr31210 3 107461146 to 107461148 2 + TSS region transcription start site region 31210
Slc6a17 3 107467548 to 107518018 50470 - protein coding gene solute carrier family 6 (neurotransmitter transporter), member 17
Orgwq5 3 107469620 to 147599053 40129433 QTL organ weight QTL 5
Sle22 3 107469620 to 107469756 136 QTL systematic lupus erythematosus susceptibility 22
D3Mit103 3 107469620 to 107469756 136 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 103
Cia5c 3 107469620 to 125522588 18052968 QTL collagen induced arthritis QTL 5c
msrvh1 3 107469620 to 115830548 8360928 QTL modifier of susceptibility to renal vascular hypertrophy/hyperplasia 1
Cpgi13676 3 107516835 to 107518623 1788 CpG island CpG island 13676
Tssr35065 3 107517321 to 107517374 53 - TSS region transcription start site region 35065
Tssr35066 3 107517769 to 107517792 23 - TSS region transcription start site region 35066
Tssr35067 3 107517911 to 107517986 75 - TSS region transcription start site region 35067
Tssr35068 3 107518001 to 107518023 22 - TSS region transcription start site region 35068
Gm36097 3 107547895 to 107554155 6260 + lncRNA gene predicted gene, 36097
Ubl4b 3 107553698 to 107555073 1375 - protein coding gene ubiquitin-like 4B
Tssr35069 3 107554991 to 107555043 52 - TSS region transcription start site region 35069
Tssr35070 3 107555048 to 107555062 14 - TSS region transcription start site region 35070
Tssr35071 3 107555069 to 107555079 10 - TSS region transcription start site region 35071
Cpgi13677 3 107582737 to 107583625 888 CpG island CpG island 13677
Cpgi13678 3 107594790 to 107597198 2408 CpG island CpG island 13678
Alx3 3 107595031 to 107605776 10745 + protein coding gene aristaless-like homeobox 3
Tssr31211 3 107595138 to 107595164 26 + TSS region transcription start site region 31211
Tssr31212 3 107600433 to 107600441 8 + TSS region transcription start site region 31212
Strip1 3 107612532 to 107631694 19162 - protein coding gene striatin interacting protein 1
Cpgi13679 3 107630830 to 107631954 1124 CpG island CpG island 13679
Gm10961 3 107631322 to 107633090 1768 + unclassified gene predicted gene 10961
Tssr35072 3 107631681 to 107631705 24 - TSS region transcription start site region 35072
Ahcyl1 3 107663120 to 107696548 33428 - protein coding gene S-adenosylhomocysteine hydrolase-like 1
Tssr35073 3 107664371 to 107664399 28 - TSS region transcription start site region 35073
Tssr35074 3 107665074 to 107665119 45 - TSS region transcription start site region 35074
Tssr35075 3 107667698 to 107667706 8 - TSS region transcription start site region 35075
Tssr35076 3 107670571 to 107670575 4 - TSS region transcription start site region 35076
Tssr35077 3 107674178 to 107674202 24 - TSS region transcription start site region 35077
Cpgi13680 3 107695768 to 107696921 1153 CpG island CpG island 13680
Tssr35078 3 107696205 to 107696216 11 - TSS region transcription start site region 35078
Tssr1013 3 107696269 to 107696280 11 - TSS region transcription start site region 1013
Tssr35079 3 107696345 to 107696348 3 - TSS region transcription start site region 35079
Tssr35080 3 107696462 to 107696574 112 - TSS region transcription start site region 35080
Gm40121 3 107696658 to 107812951 116293 + lncRNA gene predicted gene, 40121
Csf1 3 107741048 to 107760469 19421 - protein coding gene colony stimulating factor 1 (macrophage)
Tssr35081 3 107741466 to 107741496 30 - TSS region transcription start site region 35081
Tssr35082 3 107742558 to 107742595 37 - TSS region transcription start site region 35082
Tssr35083 3 107749074 to 107749096 22 - TSS region transcription start site region 35083
Tssr31213 3 107753780 to 107753801 21 + TSS region transcription start site region 31213
Tssr35084 3 107753811 to 107753839 28 - TSS region transcription start site region 35084
D3Mit104.3 3 107759348 to 107759457 109 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104.3
D3Mit104 3 107759435 to 107759527 92 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104
D3Mit104.2 3 107759522 to 107759678 156 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104.2
Cpgi13681 3 107759791 to 107760618 827 CpG island CpG island 13681
Tssr1014 3 107760172 to 107760182 10 - TSS region transcription start site region 1014
Tssr35085 3 107760187 to 107760227 40 - TSS region transcription start site region 35085
Tssr35086 3 107760234 to 107760249 15 - TSS region transcription start site region 35086
Tssr1015 3 107760258 to 107760282 24 - TSS region transcription start site region 1015
D3Mit104.1 3 107760371 to 107760614 243 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104.1
Gm43233 3 107781856 to 107782471 615 + pseudogene predicted gene 43233
Tssr35087 3 107783466 to 107783470 4 - TSS region transcription start site region 35087
Gm36211 3 107820221 to 107833539 13318 - lincRNA gene predicted gene, 36211
Tssr35088 3 107829584 to 107829599 15 - TSS region transcription start site region 35088
Tssr35089 3 107852806 to 107852817 11 - TSS region transcription start site region 35089
Tssr1016 3 107852840 to 107852848 8 - TSS region transcription start site region 1016
Tssr1017 3 107852851 to 107852860 9 - TSS region transcription start site region 1017
Tssr31214 3 107853139 to 107853150 11 + TSS region transcription start site region 31214