Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:107239790-107952198

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr31192 3 107241789 to 107241799 10 + TSS region transcription start site region 31192
Tssr31193 3 107241860 to 107241880 20 + TSS region transcription start site region 31193
Tssr31194 3 107241915 to 107241918 3 + TSS region transcription start site region 31194
D3Tem1 3 107278067 to 107278139 72 DNA segment DNA segment, Chr 3, Temple 1
Tssr31195 3 107278800 to 107278808 8 + TSS region transcription start site region 31195
Tssr31196 3 107278820 to 107278829 9 + TSS region transcription start site region 31196
Tssr31197 3 107278844 to 107278864 20 + TSS region transcription start site region 31197
Cpgi13672 3 107278848 to 107279446 598 CpG island CpG island 13672
Lamtor5 3 107278858 to 107284082 5224 + protein coding gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 5
Tssr31198 3 107278869 to 107278892 23 + TSS region transcription start site region 31198
Tssr31199 3 107278993 to 107279012 19 + TSS region transcription start site region 31199
Tssr31200 3 107279014 to 107279025 11 + TSS region transcription start site region 31200
Tssr31201 3 107279028 to 107279058 30 + TSS region transcription start site region 31201
Tssr31202 3 107279066 to 107279071 5 + TSS region transcription start site region 31202
Tssr31203 3 107291215 to 107291280 65 + TSS region transcription start site region 31203
Slc16a4 3 107291230 to 107312115 20885 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 4
Tssr31204 3 107291285 to 107291301 16 + TSS region transcription start site region 31204
Tssr1012 3 107291302 to 107291304 2 + TSS region transcription start site region 1012
Tssr35055 3 107310366 to 107310370 4 - TSS region transcription start site region 35055
Rbm15 3 107325421 to 107333673 8252 - protein coding gene RNA binding motif protein 15
Tssr35056 3 107326574 to 107326578 4 - TSS region transcription start site region 35056
Tssr35057 3 107329905 to 107329945 40 - TSS region transcription start site region 35057
Cpgi13673 3 107331964 to 107334429 2465 CpG island CpG island 13673
Tssr35058 3 107333012 to 107333023 11 - TSS region transcription start site region 35058
Tssr35059 3 107333024 to 107333069 45 - TSS region transcription start site region 35059
Tssr31205 3 107333789 to 107333802 13 + TSS region transcription start site region 31205
Tssr35060 3 107333953 to 107333973 20 - TSS region transcription start site region 35060
Cpgi13674 3 107342877 to 107343267 390 CpG island CpG island 13674
Tssr31206 3 107342890 to 107342895 5 + TSS region transcription start site region 31206
Gm5279 3 107342964 to 107343674 710 + pseudogene predicted gene 5279
Gm35700 3 107364827 to 107373106 8279 + lncRNA gene predicted gene, 35700
Tssr31207 3 107368376 to 107368383 7 + TSS region transcription start site region 31207
Tssr31208 3 107368384 to 107368389 5 + TSS region transcription start site region 31208
Tssr31209 3 107368419 to 107368429 10 + TSS region transcription start site region 31209
Gm40120 3 107380809 to 107382559 1750 + lncRNA gene predicted gene, 40120
Gm24383 3 107415863 to 107416195 332 - unclassified non-coding RNA gene predicted gene, 24383
Kcnc4 3 107438298 to 107458925 20627 - protein coding gene potassium voltage gated channel, Shaw-related subfamily, member 4
A330043J11Rik 3 107440340 to 107442975 2635 unclassified gene RIKEN cDNA A330043J11 gene
Cpgi13675 3 107457974 to 107460761 2787 CpG island CpG island 13675
Tssr35061 3 107458895 to 107458920 25 - TSS region transcription start site region 35061
Tssr35062 3 107458922 to 107458975 53 - TSS region transcription start site region 35062
Tssr35063 3 107459691 to 107459716 25 - TSS region transcription start site region 35063
Tssr35064 3 107460237 to 107460313 76 - TSS region transcription start site region 35064
Tssr31210 3 107461146 to 107461148 2 + TSS region transcription start site region 31210
Slc6a17 3 107467548 to 107518018 50470 - protein coding gene solute carrier family 6 (neurotransmitter transporter), member 17
Cia5c 3 107469620 to 125522588 18052968 QTL collagen induced arthritis QTL 5c
D3Mit103 3 107469620 to 107469756 136 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 103
msrvh1 3 107469620 to 115830548 8360928 QTL modifier of susceptibility to renal vascular hypertrophy/hyperplasia 1
Orgwq5 3 107469620 to 147599053 40129433 QTL organ weight QTL 5
Sle22 3 107469620 to 107469756 136 QTL systematic lupus erythematosus susceptibility 22
Cpgi13676 3 107516835 to 107518623 1788 CpG island CpG island 13676
Tssr35065 3 107517321 to 107517374 53 - TSS region transcription start site region 35065
Tssr35066 3 107517769 to 107517792 23 - TSS region transcription start site region 35066
Tssr35067 3 107517911 to 107517986 75 - TSS region transcription start site region 35067
Tssr35068 3 107518001 to 107518023 22 - TSS region transcription start site region 35068
Gm36097 3 107547895 to 107554155 6260 + lncRNA gene predicted gene, 36097
Ubl4b 3 107553698 to 107555073 1375 - protein coding gene ubiquitin-like 4B
Tssr35069 3 107554991 to 107555043 52 - TSS region transcription start site region 35069
Tssr35070 3 107555048 to 107555062 14 - TSS region transcription start site region 35070
Tssr35071 3 107555069 to 107555079 10 - TSS region transcription start site region 35071
Cpgi13677 3 107582737 to 107583625 888 CpG island CpG island 13677
Cpgi13678 3 107594790 to 107597198 2408 CpG island CpG island 13678
Alx3 3 107595031 to 107605776 10745 + protein coding gene aristaless-like homeobox 3
Tssr31211 3 107595138 to 107595164 26 + TSS region transcription start site region 31211
Tssr31212 3 107600433 to 107600441 8 + TSS region transcription start site region 31212
Strip1 3 107612532 to 107631694 19162 - protein coding gene striatin interacting protein 1
Cpgi13679 3 107630830 to 107631954 1124 CpG island CpG island 13679
Gm10961 3 107631322 to 107633090 1768 + unclassified gene predicted gene 10961
Tssr35072 3 107631681 to 107631705 24 - TSS region transcription start site region 35072
Ahcyl1 3 107663120 to 107696548 33428 - protein coding gene S-adenosylhomocysteine hydrolase-like 1
Tssr35073 3 107664371 to 107664399 28 - TSS region transcription start site region 35073
Tssr35074 3 107665074 to 107665119 45 - TSS region transcription start site region 35074
Tssr35075 3 107667698 to 107667706 8 - TSS region transcription start site region 35075
Tssr35076 3 107670571 to 107670575 4 - TSS region transcription start site region 35076
Tssr35077 3 107674178 to 107674202 24 - TSS region transcription start site region 35077
Cpgi13680 3 107695768 to 107696921 1153 CpG island CpG island 13680
Tssr35078 3 107696205 to 107696216 11 - TSS region transcription start site region 35078
Tssr1013 3 107696269 to 107696280 11 - TSS region transcription start site region 1013
Tssr35079 3 107696345 to 107696348 3 - TSS region transcription start site region 35079
Tssr35080 3 107696462 to 107696574 112 - TSS region transcription start site region 35080
Gm40121 3 107696658 to 107812951 116293 + lncRNA gene predicted gene, 40121
Csf1 3 107741048 to 107760469 19421 - protein coding gene colony stimulating factor 1 (macrophage)
Tssr35081 3 107741466 to 107741496 30 - TSS region transcription start site region 35081
Tssr35082 3 107742558 to 107742595 37 - TSS region transcription start site region 35082
Tssr35083 3 107749074 to 107749096 22 - TSS region transcription start site region 35083
Tssr31213 3 107753780 to 107753801 21 + TSS region transcription start site region 31213
Tssr35084 3 107753811 to 107753839 28 - TSS region transcription start site region 35084
D3Mit104.3 3 107759348 to 107759457 109 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104.3
D3Mit104 3 107759435 to 107759527 92 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104
D3Mit104.2 3 107759522 to 107759678 156 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104.2
Cpgi13681 3 107759791 to 107760618 827 CpG island CpG island 13681
Tssr1014 3 107760172 to 107760182 10 - TSS region transcription start site region 1014
Tssr35085 3 107760187 to 107760227 40 - TSS region transcription start site region 35085
Tssr35086 3 107760234 to 107760249 15 - TSS region transcription start site region 35086
Tssr1015 3 107760258 to 107760282 24 - TSS region transcription start site region 1015
D3Mit104.1 3 107760371 to 107760614 243 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104.1
Gm43233 3 107781856 to 107782471 615 + pseudogene predicted gene 43233
Tssr35087 3 107783466 to 107783470 4 - TSS region transcription start site region 35087
Gm36211 3 107820221 to 107833539 13318 - lincRNA gene predicted gene, 36211
Tssr35088 3 107829584 to 107829599 15 - TSS region transcription start site region 35088
Tssr35089 3 107852806 to 107852817 11 - TSS region transcription start site region 35089
Tssr1016 3 107852840 to 107852848 8 - TSS region transcription start site region 1016
Tssr1017 3 107852851 to 107852860 9 - TSS region transcription start site region 1017
Tssr31214 3 107853139 to 107853150 11 + TSS region transcription start site region 31214
Gm5075 3 107868022 to 107868643 621 - pseudogene predicted gene 5075
Cpgi13682 3 107868327 to 107868719 392 CpG island CpG island 13682
Cpgi13683 3 107873458 to 107873671 213 CpG island CpG island 13683
Tssr31215 3 107873842 to 107873877 35 + TSS region transcription start site region 31215
Tssr31216 3 107873880 to 107873887 7 + TSS region transcription start site region 31216
Tssr31217 3 107873898 to 107873904 6 + TSS region transcription start site region 31217
Tssr31218 3 107874794 to 107874796 2 + TSS region transcription start site region 31218
4930554G22Rik 3 107874795 to 107875480 685 + unclassified gene RIKEN cDNA 4930554G22 gene
Tssr31219 3 107877105 to 107877123 18 + TSS region transcription start site region 31219
Tssr31220 3 107877227 to 107877252 25 + TSS region transcription start site region 31220
Eps8l3 3 107877229 to 107892900 15671 + protein coding gene EPS8-like 3
Tssr31221 3 107884786 to 107884811 25 + TSS region transcription start site region 31221
Tssr31222 3 107885934 to 107885939 5 + TSS region transcription start site region 31222
Gm43745 3 107885966 to 107887848 1882 + unclassified gene predicted gene 43745
4933431E20Rik 3 107888850 to 107896213 7363 - antisense lncRNA gene RIKEN cDNA 4933431E20 gene
Cpgi13684 3 107895632 to 107896355 723 CpG island CpG island 13684
Tssr35090 3 107895743 to 107895750 7 - TSS region transcription start site region 35090
Tssr35091 3 107895754 to 107895805 51 - TSS region transcription start site region 35091
Tssr35092 3 107895806 to 107895817 11 - TSS region transcription start site region 35092
Tssr31223 3 107895831 to 107895844 13 + TSS region transcription start site region 31223
Tssr31224 3 107895849 to 107895901 52 + TSS region transcription start site region 31224
Gstm5 3 107895854 to 107898685 2831 + protein coding gene glutathione S-transferase, mu 5
Tssr31225 3 107895912 to 107895913 1 + TSS region transcription start site region 31225
Tssr31226 3 107895916 to 107895931 15 + TSS region transcription start site region 31226
Tssr31227 3 107896265 to 107896314 49 + TSS region transcription start site region 31227
Tssr31228 3 107897283 to 107897313 30 + TSS region transcription start site region 31228
Gm9515 3 107908796 to 107911320 2524 - pseudogene predicted gene 9515
Tssr35093 3 107911278 to 107911300 22 - TSS region transcription start site region 35093
Gm12489 3 107919662 to 107919809 147 + pseudogene predicted gene 12489
Gstm7 3 107926334 to 107931817 5483 - protein coding gene glutathione S-transferase, mu 7
Tssr35094 3 107928999 to 107929008 9 - TSS region transcription start site region 35094
Tssr35095 3 107931657 to 107931742 85 - TSS region transcription start site region 35095
Tssr35096 3 107931746 to 107931762 16 - TSS region transcription start site region 35096
Tssr35097 3 107931860 to 107931885 25 - TSS region transcription start site region 35097
Gstm6 3 107938847 to 107943749 4902 - protein coding gene glutathione S-transferase, mu 6
Tssr35098 3 107943332 to 107943348 16 - TSS region transcription start site region 35098
Tssr35099 3 107943349 to 107943360 11 - TSS region transcription start site region 35099
Tssr35100 3 107943363 to 107943379 16 - TSS region transcription start site region 35100
Tssr35101 3 107943390 to 107943421 31 - TSS region transcription start site region 35101
Tssr35102 3 107943683 to 107943699 16 - TSS region transcription start site region 35102
Tssr35103 3 107943705 to 107943741 36 - TSS region transcription start site region 35103
Gm12494 3 107950795 to 107953121 2326 - pseudogene predicted gene 12494