Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:107220863-107611195

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cym 3 107211295 to 107221732 10437 - protein coding gene chymosin
Tssr35053 3 107221722 to 107221738 16 - TSS region transcription start site region 35053
Tssr31190 3 107230456 to 107230467 11 + TSS region transcription start site region 31190
Tssr31191 3 107230608 to 107230617 9 + TSS region transcription start site region 31191
A630076J17Rik 3 107230614 to 107234031 3417 + protein coding gene RIKEN cDNA A630076J17 gene
D3Tem2 3 107231444 to 107231694 250 DNA segment DNA segment, Chr 3, Temple 2
Prok1 3 107232797 to 107239707 6910 - protein coding gene prokineticin 1
Tssr35054 3 107238657 to 107238707 50 - TSS region transcription start site region 35054
Tssr31192 3 107241789 to 107241799 10 + TSS region transcription start site region 31192
Tssr31193 3 107241860 to 107241880 20 + TSS region transcription start site region 31193
Tssr31194 3 107241915 to 107241918 3 + TSS region transcription start site region 31194
D3Tem1 3 107278067 to 107278139 72 DNA segment DNA segment, Chr 3, Temple 1
Tssr31195 3 107278800 to 107278808 8 + TSS region transcription start site region 31195
Tssr31196 3 107278820 to 107278829 9 + TSS region transcription start site region 31196
Tssr31197 3 107278844 to 107278864 20 + TSS region transcription start site region 31197
Cpgi13672 3 107278848 to 107279446 598 CpG island CpG island 13672
Lamtor5 3 107278858 to 107284082 5224 + protein coding gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 5
Tssr31198 3 107278869 to 107278892 23 + TSS region transcription start site region 31198
Tssr31199 3 107278993 to 107279012 19 + TSS region transcription start site region 31199
Tssr31200 3 107279014 to 107279025 11 + TSS region transcription start site region 31200
Tssr31201 3 107279028 to 107279058 30 + TSS region transcription start site region 31201
Tssr31202 3 107279066 to 107279071 5 + TSS region transcription start site region 31202
Tssr31203 3 107291215 to 107291280 65 + TSS region transcription start site region 31203
Slc16a4 3 107291230 to 107312115 20885 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 4
Tssr31204 3 107291285 to 107291301 16 + TSS region transcription start site region 31204
Tssr1012 3 107291302 to 107291304 2 + TSS region transcription start site region 1012
Tssr35055 3 107310366 to 107310370 4 - TSS region transcription start site region 35055
Rbm15 3 107325421 to 107333673 8252 - protein coding gene RNA binding motif protein 15
Tssr35056 3 107326574 to 107326578 4 - TSS region transcription start site region 35056
Tssr35057 3 107329905 to 107329945 40 - TSS region transcription start site region 35057
Cpgi13673 3 107331964 to 107334429 2465 CpG island CpG island 13673
Tssr35058 3 107333012 to 107333023 11 - TSS region transcription start site region 35058
Tssr35059 3 107333024 to 107333069 45 - TSS region transcription start site region 35059
Tssr31205 3 107333789 to 107333802 13 + TSS region transcription start site region 31205
Tssr35060 3 107333953 to 107333973 20 - TSS region transcription start site region 35060
Cpgi13674 3 107342877 to 107343267 390 CpG island CpG island 13674
Tssr31206 3 107342890 to 107342895 5 + TSS region transcription start site region 31206
Gm5279 3 107342964 to 107343674 710 + pseudogene predicted gene 5279
Gm35700 3 107364827 to 107373106 8279 + lncRNA gene predicted gene, 35700
Tssr31207 3 107368376 to 107368383 7 + TSS region transcription start site region 31207
Tssr31208 3 107368384 to 107368389 5 + TSS region transcription start site region 31208
Tssr31209 3 107368419 to 107368429 10 + TSS region transcription start site region 31209
Gm40120 3 107380809 to 107382559 1750 + lncRNA gene predicted gene, 40120
Gm24383 3 107415863 to 107416195 332 - unclassified non-coding RNA gene predicted gene, 24383
Kcnc4 3 107438298 to 107458925 20627 - protein coding gene potassium voltage gated channel, Shaw-related subfamily, member 4
A330043J11Rik 3 107440340 to 107442975 2635 unclassified gene RIKEN cDNA A330043J11 gene
Cpgi13675 3 107457974 to 107460761 2787 CpG island CpG island 13675
Tssr35061 3 107458895 to 107458920 25 - TSS region transcription start site region 35061
Tssr35062 3 107458922 to 107458975 53 - TSS region transcription start site region 35062
Tssr35063 3 107459691 to 107459716 25 - TSS region transcription start site region 35063
Tssr35064 3 107460237 to 107460313 76 - TSS region transcription start site region 35064
Tssr31210 3 107461146 to 107461148 2 + TSS region transcription start site region 31210
Slc6a17 3 107467548 to 107518018 50470 - protein coding gene solute carrier family 6 (neurotransmitter transporter), member 17
D3Mit103 3 107469620 to 107469756 136 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 103
Cia5c 3 107469620 to 125522588 18052968 QTL collagen induced arthritis QTL 5c
msrvh1 3 107469620 to 115830548 8360928 QTL modifier of susceptibility to renal vascular hypertrophy/hyperplasia 1
Sle22 3 107469620 to 107469756 136 QTL systematic lupus erythematosus susceptibility 22
Orgwq5 3 107469620 to 147599053 40129433 QTL organ weight QTL 5
Cpgi13676 3 107516835 to 107518623 1788 CpG island CpG island 13676
Tssr35065 3 107517321 to 107517374 53 - TSS region transcription start site region 35065
Tssr35066 3 107517769 to 107517792 23 - TSS region transcription start site region 35066
Tssr35067 3 107517911 to 107517986 75 - TSS region transcription start site region 35067
Tssr35068 3 107518001 to 107518023 22 - TSS region transcription start site region 35068
Gm36097 3 107547895 to 107554155 6260 + lncRNA gene predicted gene, 36097
Ubl4b 3 107553698 to 107555073 1375 - protein coding gene ubiquitin-like 4B
Tssr35069 3 107554991 to 107555043 52 - TSS region transcription start site region 35069
Tssr35070 3 107555048 to 107555062 14 - TSS region transcription start site region 35070
Tssr35071 3 107555069 to 107555079 10 - TSS region transcription start site region 35071
Cpgi13677 3 107582737 to 107583625 888 CpG island CpG island 13677
Cpgi13678 3 107594790 to 107597198 2408 CpG island CpG island 13678
Alx3 3 107595031 to 107605776 10745 + protein coding gene aristaless-like homeobox 3
Tssr31211 3 107595138 to 107595164 26 + TSS region transcription start site region 31211
Tssr31212 3 107600433 to 107600441 8 + TSS region transcription start site region 31212