Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:107123983-109644001

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544 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi13671 3 107160044 to 107160251 207 CpG island CpG island 13671
Tssr1004 3 107173796 to 107173800 4 + TSS region transcription start site region 1004
Tssr31166 3 107183139 to 107183144 5 + TSS region transcription start site region 31166
Kcna10 3 107183143 to 107195721 12578 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 10
Tssr31167 3 107211292 to 107211302 10 + TSS region transcription start site region 31167
Cym 3 107211295 to 107221732 10437 - protein coding gene chymosin
Tssr35013 3 107211317 to 107211326 9 - TSS region transcription start site region 35013
Tssr31168 3 107211338 to 107211374 36 + TSS region transcription start site region 31168
Tssr35014 3 107211343 to 107211384 41 - TSS region transcription start site region 35014
Tssr31169 3 107211384 to 107211407 23 + TSS region transcription start site region 31169
Tssr35015 3 107211401 to 107211404 3 - TSS region transcription start site region 35015
Tssr31170 3 107211421 to 107211434 13 + TSS region transcription start site region 31170
Tssr1005 3 107211424 to 107211431 7 - TSS region transcription start site region 1005
Tssr31171 3 107211437 to 107211440 3 + TSS region transcription start site region 31171
Tssr31172 3 107211448 to 107211456 8 + TSS region transcription start site region 31172
Tssr31173 3 107211459 to 107211470 11 + TSS region transcription start site region 31173
Tssr1006 3 107211464 to 107211469 5 - TSS region transcription start site region 1006
Tssr31174 3 107212763 to 107212791 28 + TSS region transcription start site region 31174
Tssr31175 3 107212796 to 107212811 15 + TSS region transcription start site region 31175
Tssr35016 3 107212802 to 107212813 11 - TSS region transcription start site region 35016
Tssr35017 3 107212818 to 107212827 9 - TSS region transcription start site region 35017
Tssr31176 3 107212826 to 107212834 8 + TSS region transcription start site region 31176
Tssr35018 3 107212844 to 107212855 11 - TSS region transcription start site region 35018
Tssr35019 3 107212857 to 107212861 4 - TSS region transcription start site region 35019
Tssr35020 3 107212862 to 107212877 15 - TSS region transcription start site region 35020
Tssr31177 3 107213373 to 107213399 26 + TSS region transcription start site region 31177
Tssr35021 3 107213412 to 107213421 9 - TSS region transcription start site region 35021
Tssr1007 3 107213422 to 107213426 4 - TSS region transcription start site region 1007
Tssr35022 3 107213435 to 107213450 15 - TSS region transcription start site region 35022
Tssr35023 3 107213452 to 107213459 7 - TSS region transcription start site region 35023
Tssr35024 3 107213466 to 107213471 5 - TSS region transcription start site region 35024
Tssr35025 3 107213473 to 107213477 4 - TSS region transcription start site region 35025
Tssr35026 3 107213479 to 107213511 32 - TSS region transcription start site region 35026
Tssr35027 3 107213524 to 107213529 5 - TSS region transcription start site region 35027
Tssr35028 3 107214246 to 107214277 31 - TSS region transcription start site region 35028
Tssr35029 3 107214278 to 107214316 38 - TSS region transcription start site region 35029
Tssr35030 3 107214760 to 107214766 6 - TSS region transcription start site region 35030
Tssr31178 3 107215945 to 107215966 21 + TSS region transcription start site region 31178
Tssr35031 3 107215953 to 107215958 5 - TSS region transcription start site region 35031
Tssr35032 3 107215961 to 107215974 13 - TSS region transcription start site region 35032
Tssr35033 3 107215977 to 107215989 12 - TSS region transcription start site region 35033
Tssr31179 3 107215980 to 107215992 12 + TSS region transcription start site region 31179
Tssr35034 3 107215993 to 107216047 54 - TSS region transcription start site region 35034
Tssr31180 3 107216006 to 107216015 9 + TSS region transcription start site region 31180
Tssr1008 3 107216042 to 107216051 9 + TSS region transcription start site region 1008
Tssr35035 3 107216049 to 107216074 25 - TSS region transcription start site region 35035
Tssr31181 3 107216055 to 107216070 15 + TSS region transcription start site region 31181
Tssr35036 3 107216082 to 107216095 13 - TSS region transcription start site region 35036
Tssr35037 3 107216102 to 107216131 29 - TSS region transcription start site region 35037
Tssr1009 3 107216221 to 107216225 4 - TSS region transcription start site region 1009
Tssr31182 3 107218121 to 107218127 6 + TSS region transcription start site region 31182
Tssr35038 3 107218138 to 107218146 8 - TSS region transcription start site region 35038
Tssr31183 3 107218145 to 107218150 5 + TSS region transcription start site region 31183
Tssr1010 3 107218157 to 107218164 7 - TSS region transcription start site region 1010
Tssr31184 3 107218164 to 107218213 49 + TSS region transcription start site region 31184
Tssr35039 3 107218164 to 107218172 8 - TSS region transcription start site region 35039
Tssr35040 3 107218193 to 107218195 2 - TSS region transcription start site region 35040
Tssr35041 3 107218200 to 107218208 8 - TSS region transcription start site region 35041
Tssr35042 3 107218212 to 107218242 30 - TSS region transcription start site region 35042
Tssr31185 3 107218601 to 107218634 33 + TSS region transcription start site region 31185
Tssr35043 3 107218644 to 107218745 101 - TSS region transcription start site region 35043
Tssr1011 3 107218666 to 107218674 8 + TSS region transcription start site region 1011
Tssr31186 3 107218680 to 107218689 9 + TSS region transcription start site region 31186
Tssr31187 3 107218692 to 107218697 5 + TSS region transcription start site region 31187
Tssr35044 3 107218747 to 107218752 5 - TSS region transcription start site region 35044
Tssr35045 3 107219009 to 107219056 47 - TSS region transcription start site region 35045
Tssr35046 3 107219214 to 107219235 21 - TSS region transcription start site region 35046
Tssr31188 3 107219625 to 107219631 6 + TSS region transcription start site region 31188
Tssr35047 3 107219651 to 107219686 35 - TSS region transcription start site region 35047
Tssr35048 3 107219701 to 107219741 40 - TSS region transcription start site region 35048
Tssr31189 3 107219707 to 107219730 23 + TSS region transcription start site region 31189
Tssr35049 3 107219748 to 107219760 12 - TSS region transcription start site region 35049
Tssr35050 3 107219769 to 107219775 6 - TSS region transcription start site region 35050
Tssr35051 3 107219780 to 107219785 5 - TSS region transcription start site region 35051
Tssr35052 3 107220409 to 107220414 5 - TSS region transcription start site region 35052
Tssr35053 3 107221722 to 107221738 16 - TSS region transcription start site region 35053
Tssr31190 3 107230456 to 107230467 11 + TSS region transcription start site region 31190
Tssr31191 3 107230608 to 107230617 9 + TSS region transcription start site region 31191
A630076J17Rik 3 107230614 to 107234031 3417 + protein coding gene RIKEN cDNA A630076J17 gene
D3Tem2 3 107231444 to 107231694 250 DNA segment DNA segment, Chr 3, Temple 2
Prok1 3 107232797 to 107239707 6910 - protein coding gene prokineticin 1
Tssr35054 3 107238657 to 107238707 50 - TSS region transcription start site region 35054
Tssr31192 3 107241789 to 107241799 10 + TSS region transcription start site region 31192
Tssr31193 3 107241860 to 107241880 20 + TSS region transcription start site region 31193
Tssr31194 3 107241915 to 107241918 3 + TSS region transcription start site region 31194
D3Tem1 3 107278067 to 107278139 72 DNA segment DNA segment, Chr 3, Temple 1
Tssr31195 3 107278800 to 107278808 8 + TSS region transcription start site region 31195
Tssr31196 3 107278820 to 107278829 9 + TSS region transcription start site region 31196
Tssr31197 3 107278844 to 107278864 20 + TSS region transcription start site region 31197
Cpgi13672 3 107278848 to 107279446 598 CpG island CpG island 13672
Lamtor5 3 107278858 to 107284082 5224 + protein coding gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 5
Tssr31198 3 107278869 to 107278892 23 + TSS region transcription start site region 31198
Tssr31199 3 107278993 to 107279012 19 + TSS region transcription start site region 31199
Tssr31200 3 107279014 to 107279025 11 + TSS region transcription start site region 31200
Tssr31201 3 107279028 to 107279058 30 + TSS region transcription start site region 31201
Tssr31202 3 107279066 to 107279071 5 + TSS region transcription start site region 31202
Tssr31203 3 107291215 to 107291280 65 + TSS region transcription start site region 31203
Slc16a4 3 107291230 to 107312115 20885 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 4
Tssr31204 3 107291285 to 107291301 16 + TSS region transcription start site region 31204
Tssr1012 3 107291302 to 107291304 2 + TSS region transcription start site region 1012
Tssr35055 3 107310366 to 107310370 4 - TSS region transcription start site region 35055
Rbm15 3 107325421 to 107333673 8252 - protein coding gene RNA binding motif protein 15
Tssr35056 3 107326574 to 107326578 4 - TSS region transcription start site region 35056
Tssr35057 3 107329905 to 107329945 40 - TSS region transcription start site region 35057
Cpgi13673 3 107331964 to 107334429 2465 CpG island CpG island 13673
Tssr35058 3 107333012 to 107333023 11 - TSS region transcription start site region 35058
Tssr35059 3 107333024 to 107333069 45 - TSS region transcription start site region 35059
Tssr31205 3 107333789 to 107333802 13 + TSS region transcription start site region 31205
Tssr35060 3 107333953 to 107333973 20 - TSS region transcription start site region 35060
Cpgi13674 3 107342877 to 107343267 390 CpG island CpG island 13674
Tssr31206 3 107342890 to 107342895 5 + TSS region transcription start site region 31206
Gm5279 3 107342964 to 107343674 710 + pseudogene predicted gene 5279
Gm35700 3 107364827 to 107373106 8279 + lncRNA gene predicted gene, 35700
Tssr31207 3 107368376 to 107368383 7 + TSS region transcription start site region 31207
Tssr31208 3 107368384 to 107368389 5 + TSS region transcription start site region 31208
Tssr31209 3 107368419 to 107368429 10 + TSS region transcription start site region 31209
Gm40120 3 107380809 to 107382559 1750 + lncRNA gene predicted gene, 40120
Gm24383 3 107415863 to 107416195 332 - unclassified non-coding RNA gene predicted gene, 24383
Kcnc4 3 107438298 to 107458925 20627 - protein coding gene potassium voltage gated channel, Shaw-related subfamily, member 4
A330043J11Rik 3 107440340 to 107442975 2635 unclassified gene RIKEN cDNA A330043J11 gene
Cpgi13675 3 107457974 to 107460761 2787 CpG island CpG island 13675
Tssr35061 3 107458895 to 107458920 25 - TSS region transcription start site region 35061
Tssr35062 3 107458922 to 107458975 53 - TSS region transcription start site region 35062
Tssr35063 3 107459691 to 107459716 25 - TSS region transcription start site region 35063
Tssr35064 3 107460237 to 107460313 76 - TSS region transcription start site region 35064
Tssr31210 3 107461146 to 107461148 2 + TSS region transcription start site region 31210
Slc6a17 3 107467548 to 107518018 50470 - protein coding gene solute carrier family 6 (neurotransmitter transporter), member 17
msrvh1 3 107469620 to 115830548 8360928 QTL modifier of susceptibility to renal vascular hypertrophy/hyperplasia 1
Cia5c 3 107469620 to 125522588 18052968 QTL collagen induced arthritis QTL 5c
D3Mit103 3 107469620 to 107469756 136 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 103
Sle22 3 107469620 to 107469756 136 QTL systematic lupus erythematosus susceptibility 22
Orgwq5 3 107469620 to 147599053 40129433 QTL organ weight QTL 5
Cpgi13676 3 107516835 to 107518623 1788 CpG island CpG island 13676
Tssr35065 3 107517321 to 107517374 53 - TSS region transcription start site region 35065
Tssr35066 3 107517769 to 107517792 23 - TSS region transcription start site region 35066
Tssr35067 3 107517911 to 107517986 75 - TSS region transcription start site region 35067
Tssr35068 3 107518001 to 107518023 22 - TSS region transcription start site region 35068
Gm36097 3 107547895 to 107554155 6260 + lncRNA gene predicted gene, 36097
Ubl4b 3 107553698 to 107555073 1375 - protein coding gene ubiquitin-like 4B
Tssr35069 3 107554991 to 107555043 52 - TSS region transcription start site region 35069
Tssr35070 3 107555048 to 107555062 14 - TSS region transcription start site region 35070
Tssr35071 3 107555069 to 107555079 10 - TSS region transcription start site region 35071
Cpgi13677 3 107582737 to 107583625 888 CpG island CpG island 13677
Cpgi13678 3 107594790 to 107597198 2408 CpG island CpG island 13678
Alx3 3 107595031 to 107605776 10745 + protein coding gene aristaless-like homeobox 3
Tssr31211 3 107595138 to 107595164 26 + TSS region transcription start site region 31211
Tssr31212 3 107600433 to 107600441 8 + TSS region transcription start site region 31212
Strip1 3 107612532 to 107631694 19162 - protein coding gene striatin interacting protein 1
Cpgi13679 3 107630830 to 107631954 1124 CpG island CpG island 13679
Gm10961 3 107631322 to 107633090 1768 + unclassified gene predicted gene 10961
Tssr35072 3 107631681 to 107631705 24 - TSS region transcription start site region 35072
Ahcyl1 3 107663120 to 107696548 33428 - protein coding gene S-adenosylhomocysteine hydrolase-like 1
Tssr35073 3 107664371 to 107664399 28 - TSS region transcription start site region 35073
Tssr35074 3 107665074 to 107665119 45 - TSS region transcription start site region 35074
Tssr35075 3 107667698 to 107667706 8 - TSS region transcription start site region 35075
Tssr35076 3 107670571 to 107670575 4 - TSS region transcription start site region 35076
Tssr35077 3 107674178 to 107674202 24 - TSS region transcription start site region 35077
Cpgi13680 3 107695768 to 107696921 1153 CpG island CpG island 13680
Tssr35078 3 107696205 to 107696216 11 - TSS region transcription start site region 35078
Tssr1013 3 107696269 to 107696280 11 - TSS region transcription start site region 1013
Tssr35079 3 107696345 to 107696348 3 - TSS region transcription start site region 35079
Tssr35080 3 107696462 to 107696574 112 - TSS region transcription start site region 35080
Gm40121 3 107696658 to 107812951 116293 + lncRNA gene predicted gene, 40121
Csf1 3 107741048 to 107760469 19421 - protein coding gene colony stimulating factor 1 (macrophage)
Tssr35081 3 107741466 to 107741496 30 - TSS region transcription start site region 35081
Tssr35082 3 107742558 to 107742595 37 - TSS region transcription start site region 35082
Tssr35083 3 107749074 to 107749096 22 - TSS region transcription start site region 35083
Tssr31213 3 107753780 to 107753801 21 + TSS region transcription start site region 31213
Tssr35084 3 107753811 to 107753839 28 - TSS region transcription start site region 35084
D3Mit104.3 3 107759348 to 107759457 109 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104.3
D3Mit104 3 107759435 to 107759527 92 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104
D3Mit104.2 3 107759522 to 107759678 156 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104.2
Cpgi13681 3 107759791 to 107760618 827 CpG island CpG island 13681
Tssr1014 3 107760172 to 107760182 10 - TSS region transcription start site region 1014
Tssr35085 3 107760187 to 107760227 40 - TSS region transcription start site region 35085
Tssr35086 3 107760234 to 107760249 15 - TSS region transcription start site region 35086
Tssr1015 3 107760258 to 107760282 24 - TSS region transcription start site region 1015
D3Mit104.1 3 107760371 to 107760614 243 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104.1
Gm43233 3 107781856 to 107782471 615 + pseudogene predicted gene 43233
Tssr35087 3 107783466 to 107783470 4 - TSS region transcription start site region 35087
Gm36211 3 107820221 to 107833539 13318 - lincRNA gene predicted gene, 36211
Tssr35088 3 107829584 to 107829599 15 - TSS region transcription start site region 35088
Tssr35089 3 107852806 to 107852817 11 - TSS region transcription start site region 35089
Tssr1016 3 107852840 to 107852848 8 - TSS region transcription start site region 1016
Tssr1017 3 107852851 to 107852860 9 - TSS region transcription start site region 1017
Tssr31214 3 107853139 to 107853150 11 + TSS region transcription start site region 31214
Gm5075 3 107868022 to 107868643 621 - pseudogene predicted gene 5075
Cpgi13682 3 107868327 to 107868719 392 CpG island CpG island 13682
Cpgi13683 3 107873458 to 107873671 213 CpG island CpG island 13683
Tssr31215 3 107873842 to 107873877 35 + TSS region transcription start site region 31215
Tssr31216 3 107873880 to 107873887 7 + TSS region transcription start site region 31216
Tssr31217 3 107873898 to 107873904 6 + TSS region transcription start site region 31217
Tssr31218 3 107874794 to 107874796 2 + TSS region transcription start site region 31218
4930554G22Rik 3 107874795 to 107875480 685 + unclassified gene RIKEN cDNA 4930554G22 gene
Tssr31219 3 107877105 to 107877123 18 + TSS region transcription start site region 31219
Tssr31220 3 107877227 to 107877252 25 + TSS region transcription start site region 31220
Eps8l3 3 107877229 to 107892900 15671 + protein coding gene EPS8-like 3
Tssr31221 3 107884786 to 107884811 25 + TSS region transcription start site region 31221
Tssr31222 3 107885934 to 107885939 5 + TSS region transcription start site region 31222
Gm43745 3 107885966 to 107887848 1882 + unclassified gene predicted gene 43745