Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:106853259-107213400

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35507 3 106827307 to 106879361 52054 - lincRNA gene predicted gene, 35507
Gm18162 3 106887587 to 106888442 855 pseudogene predicted gene, 18162
Gm27008 3 106903241 to 106981614 78373 - antisense lncRNA gene predicted gene, 27008
Tssr31147 3 107001637 to 107001661 24 + TSS region transcription start site region 31147
D3Tem3 3 107033259 to 107033400 141 DNA segment DNA segment, Chr 3, Temple 3
Cpgi13669 3 107035613 to 107037456 1843 CpG island CpG island 13669
Tssr31148 3 107036156 to 107036181 25 + TSS region transcription start site region 31148
Kcna3 3 107036169 to 107038070 1901 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 3
Tssr35008 3 107038043 to 107038062 19 - TSS region transcription start site region 35008
Tssr35009 3 107038306 to 107038335 29 - TSS region transcription start site region 35009
Tssr31149 3 107038927 to 107038944 17 + TSS region transcription start site region 31149
AI504432 3 107039504 to 107054322 14818 + lincRNA gene expressed sequence AI504432
D3Mit143 3 107046406 to 107046531 125 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 143
Gm38712 3 107054947 to 107066682 11735 - lncRNA gene predicted gene, 38712
Tssr35010 3 107066712 to 107066713 1 - TSS region transcription start site region 35010
Tssr31150 3 107090842 to 107090851 9 + TSS region transcription start site region 31150
Tssr31151 3 107090874 to 107090905 31 + TSS region transcription start site region 31151
A930002I21Rik 3 107090880 to 107098401 7521 + lincRNA gene RIKEN cDNA A930002I21 gene
Tssr31152 3 107090913 to 107090930 17 + TSS region transcription start site region 31152
Tssr31153 3 107090948 to 107090963 15 + TSS region transcription start site region 31153
Tssr31154 3 107091408 to 107091423 15 + TSS region transcription start site region 31154
Tssr31155 3 107091430 to 107091442 12 + TSS region transcription start site region 31155
Tssr35011 3 107091784 to 107091820 36 - TSS region transcription start site region 35011
Tssr35012 3 107092912 to 107092919 7 - TSS region transcription start site region 35012
Cpgi13670 3 107100917 to 107102870 1953 CpG island CpG island 13670
Tssr31156 3 107100928 to 107100989 61 + TSS region transcription start site region 31156
Tssr31157 3 107101027 to 107101057 30 + TSS region transcription start site region 31157
Kcna2 3 107101146 to 107115005 13859 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 2
Tssr31158 3 107101267 to 107101281 14 + TSS region transcription start site region 31158
Tssr31159 3 107101551 to 107101562 11 + TSS region transcription start site region 31159
Tssr31160 3 107101578 to 107101585 7 + TSS region transcription start site region 31160
Tssr31161 3 107101596 to 107101649 53 + TSS region transcription start site region 31161
Tssr31162 3 107101660 to 107101669 9 + TSS region transcription start site region 31162
Tssr31163 3 107101700 to 107101712 12 + TSS region transcription start site region 31163
Tssr31164 3 107101766 to 107101803 37 + TSS region transcription start site region 31164
Tssr31165 3 107102580 to 107102601 21 + TSS region transcription start site region 31165
Cpgi13671 3 107160044 to 107160251 207 CpG island CpG island 13671
Tssr1004 3 107173796 to 107173800 4 + TSS region transcription start site region 1004
Tssr31166 3 107183139 to 107183144 5 + TSS region transcription start site region 31166
Kcna10 3 107183143 to 107195721 12578 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 10
Tssr31167 3 107211292 to 107211302 10 + TSS region transcription start site region 31167
Cym 3 107211295 to 107221732 10437 - protein coding gene chymosin
Tssr35013 3 107211317 to 107211326 9 - TSS region transcription start site region 35013
Tssr31168 3 107211338 to 107211374 36 + TSS region transcription start site region 31168
Tssr35014 3 107211343 to 107211384 41 - TSS region transcription start site region 35014
Tssr31169 3 107211384 to 107211407 23 + TSS region transcription start site region 31169
Tssr35015 3 107211401 to 107211404 3 - TSS region transcription start site region 35015
Tssr31170 3 107211421 to 107211434 13 + TSS region transcription start site region 31170
Tssr1005 3 107211424 to 107211431 7 - TSS region transcription start site region 1005
Tssr31171 3 107211437 to 107211440 3 + TSS region transcription start site region 31171
Tssr31172 3 107211448 to 107211456 8 + TSS region transcription start site region 31172
Tssr31173 3 107211459 to 107211470 11 + TSS region transcription start site region 31173
Tssr1006 3 107211464 to 107211469 5 - TSS region transcription start site region 1006
Tssr31174 3 107212763 to 107212791 28 + TSS region transcription start site region 31174
Tssr31175 3 107212796 to 107212811 15 + TSS region transcription start site region 31175
Tssr35016 3 107212802 to 107212813 11 - TSS region transcription start site region 35016
Tssr35017 3 107212818 to 107212827 9 - TSS region transcription start site region 35017
Tssr31176 3 107212826 to 107212834 8 + TSS region transcription start site region 31176
Tssr35018 3 107212844 to 107212855 11 - TSS region transcription start site region 35018
Tssr35019 3 107212857 to 107212861 4 - TSS region transcription start site region 35019
Tssr35020 3 107212862 to 107212877 15 - TSS region transcription start site region 35020
Tssr31177 3 107213373 to 107213399 26 + TSS region transcription start site region 31177