Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:106691472-109746648

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626 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrif1 3 106684987 to 106736577 51590 + protein coding gene ligand dependent nuclear receptor interacting factor 1
Cpgi13668 3 106721491 to 106722466 975 CpG island CpG island 13668
Tssr31132 3 106721672 to 106721733 61 + TSS region transcription start site region 31132
Tssr31133 3 106721792 to 106721803 11 + TSS region transcription start site region 31133
Tssr31134 3 106721809 to 106721822 13 + TSS region transcription start site region 31134
Tssr31135 3 106721853 to 106721864 11 + TSS region transcription start site region 31135
Tssr31136 3 106721873 to 106721876 3 + TSS region transcription start site region 31136
Tssr31137 3 106721898 to 106721954 56 + TSS region transcription start site region 31137
Tssr31138 3 106722132 to 106722139 7 + TSS region transcription start site region 31138
Tssr31139 3 106722225 to 106722258 33 + TSS region transcription start site region 31139
Gm38253 3 106725599 to 106730276 4677 + unclassified gene predicted gene, 38253
Cd53 3 106759921 to 106790149 30228 - protein coding gene CD53 antigen
Tssr34986 3 106760469 to 106760485 16 - TSS region transcription start site region 34986
Tssr34987 3 106760516 to 106760530 14 - TSS region transcription start site region 34987
Tssr34988 3 106760596 to 106760602 6 - TSS region transcription start site region 34988
Tssr34989 3 106760801 to 106760812 11 - TSS region transcription start site region 34989
Tssr34990 3 106762117 to 106762181 64 - TSS region transcription start site region 34990
Tssr34991 3 106763238 to 106763287 49 - TSS region transcription start site region 34991
Tssr34992 3 106766425 to 106766465 40 - TSS region transcription start site region 34992
Tssr34993 3 106766478 to 106766501 23 - TSS region transcription start site region 34993
Tssr34994 3 106766671 to 106766692 21 - TSS region transcription start site region 34994
Tssr34995 3 106766726 to 106766743 17 - TSS region transcription start site region 34995
Tssr34996 3 106766781 to 106766811 30 - TSS region transcription start site region 34996
Tssr34997 3 106767362 to 106767417 55 - TSS region transcription start site region 34997
Tssr34998 3 106767955 to 106768005 50 - TSS region transcription start site region 34998
Tssr1001 3 106775877 to 106775900 23 - TSS region transcription start site region 1001
Tssr31140 3 106785404 to 106785426 22 + TSS region transcription start site region 31140
Tssr31141 3 106785478 to 106785489 11 + TSS region transcription start site region 31141
Tssr1002 3 106788012 to 106788027 15 - TSS region transcription start site region 1002
Tssr34999 3 106788078 to 106788118 40 - TSS region transcription start site region 34999
Tssr31142 3 106788261 to 106788268 7 + TSS region transcription start site region 31142
Tssr1003 3 106788532 to 106788548 16 + TSS region transcription start site region 1003
Tssr35000 3 106788568 to 106788579 11 - TSS region transcription start site region 35000
Tssr31143 3 106788759 to 106788771 12 + TSS region transcription start site region 31143
Tssr31144 3 106788799 to 106788808 9 + TSS region transcription start site region 31144
Tssr31145 3 106788858 to 106788882 24 + TSS region transcription start site region 31145
Tssr35001 3 106790003 to 106790028 25 - TSS region transcription start site region 35001
Tssr35002 3 106790034 to 106790045 11 - TSS region transcription start site region 35002
Tssr35003 3 106790047 to 106790072 25 - TSS region transcription start site region 35003
Tssr35004 3 106790073 to 106790084 11 - TSS region transcription start site region 35004
Tssr35005 3 106790129 to 106790140 11 - TSS region transcription start site region 35005
Tssr35006 3 106790143 to 106790154 11 - TSS region transcription start site region 35006
Tssr31146 3 106790164 to 106790176 12 + TSS region transcription start site region 31146
Tssr35007 3 106790175 to 106790186 11 - TSS region transcription start site region 35007
Olfr266 3 106821607 to 106822557 950 - protein coding gene olfactory receptor 266
Gm35507 3 106827307 to 106879361 52054 - lincRNA gene predicted gene, 35507
Gm18162 3 106887587 to 106888442 855 pseudogene predicted gene, 18162
Gm27008 3 106903241 to 106981614 78373 - antisense lncRNA gene predicted gene, 27008
Tssr31147 3 107001637 to 107001661 24 + TSS region transcription start site region 31147
D3Tem3 3 107033259 to 107033400 141 DNA segment DNA segment, Chr 3, Temple 3
Cpgi13669 3 107035613 to 107037456 1843 CpG island CpG island 13669
Tssr31148 3 107036156 to 107036181 25 + TSS region transcription start site region 31148
Kcna3 3 107036169 to 107038070 1901 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 3
Tssr35008 3 107038043 to 107038062 19 - TSS region transcription start site region 35008
Tssr35009 3 107038306 to 107038335 29 - TSS region transcription start site region 35009
Tssr31149 3 107038927 to 107038944 17 + TSS region transcription start site region 31149
AI504432 3 107039504 to 107054322 14818 + lincRNA gene expressed sequence AI504432
D3Mit143 3 107046406 to 107046531 125 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 143
Gm38712 3 107054947 to 107066682 11735 - lncRNA gene predicted gene, 38712
Tssr35010 3 107066712 to 107066713 1 - TSS region transcription start site region 35010
Tssr31150 3 107090842 to 107090851 9 + TSS region transcription start site region 31150
Tssr31151 3 107090874 to 107090905 31 + TSS region transcription start site region 31151
A930002I21Rik 3 107090880 to 107098401 7521 + lincRNA gene RIKEN cDNA A930002I21 gene
Tssr31152 3 107090913 to 107090930 17 + TSS region transcription start site region 31152
Tssr31153 3 107090948 to 107090963 15 + TSS region transcription start site region 31153
Tssr31154 3 107091408 to 107091423 15 + TSS region transcription start site region 31154
Tssr31155 3 107091430 to 107091442 12 + TSS region transcription start site region 31155
Tssr35011 3 107091784 to 107091820 36 - TSS region transcription start site region 35011
Tssr35012 3 107092912 to 107092919 7 - TSS region transcription start site region 35012
Cpgi13670 3 107100917 to 107102870 1953 CpG island CpG island 13670
Tssr31156 3 107100928 to 107100989 61 + TSS region transcription start site region 31156
Tssr31157 3 107101027 to 107101057 30 + TSS region transcription start site region 31157
Kcna2 3 107101146 to 107115005 13859 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 2
Tssr31158 3 107101267 to 107101281 14 + TSS region transcription start site region 31158
Tssr31159 3 107101551 to 107101562 11 + TSS region transcription start site region 31159
Tssr31160 3 107101578 to 107101585 7 + TSS region transcription start site region 31160
Tssr31161 3 107101596 to 107101649 53 + TSS region transcription start site region 31161
Tssr31162 3 107101660 to 107101669 9 + TSS region transcription start site region 31162
Tssr31163 3 107101700 to 107101712 12 + TSS region transcription start site region 31163
Tssr31164 3 107101766 to 107101803 37 + TSS region transcription start site region 31164
Tssr31165 3 107102580 to 107102601 21 + TSS region transcription start site region 31165
Cpgi13671 3 107160044 to 107160251 207 CpG island CpG island 13671
Tssr1004 3 107173796 to 107173800 4 + TSS region transcription start site region 1004
Tssr31166 3 107183139 to 107183144 5 + TSS region transcription start site region 31166
Kcna10 3 107183143 to 107195721 12578 + protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 10
Tssr31167 3 107211292 to 107211302 10 + TSS region transcription start site region 31167
Cym 3 107211295 to 107221732 10437 - protein coding gene chymosin
Tssr35013 3 107211317 to 107211326 9 - TSS region transcription start site region 35013
Tssr31168 3 107211338 to 107211374 36 + TSS region transcription start site region 31168
Tssr35014 3 107211343 to 107211384 41 - TSS region transcription start site region 35014
Tssr31169 3 107211384 to 107211407 23 + TSS region transcription start site region 31169
Tssr35015 3 107211401 to 107211404 3 - TSS region transcription start site region 35015
Tssr31170 3 107211421 to 107211434 13 + TSS region transcription start site region 31170
Tssr1005 3 107211424 to 107211431 7 - TSS region transcription start site region 1005
Tssr31171 3 107211437 to 107211440 3 + TSS region transcription start site region 31171
Tssr31172 3 107211448 to 107211456 8 + TSS region transcription start site region 31172
Tssr31173 3 107211459 to 107211470 11 + TSS region transcription start site region 31173
Tssr1006 3 107211464 to 107211469 5 - TSS region transcription start site region 1006
Tssr31174 3 107212763 to 107212791 28 + TSS region transcription start site region 31174
Tssr31175 3 107212796 to 107212811 15 + TSS region transcription start site region 31175
Tssr35016 3 107212802 to 107212813 11 - TSS region transcription start site region 35016
Tssr35017 3 107212818 to 107212827 9 - TSS region transcription start site region 35017
Tssr31176 3 107212826 to 107212834 8 + TSS region transcription start site region 31176
Tssr35018 3 107212844 to 107212855 11 - TSS region transcription start site region 35018
Tssr35019 3 107212857 to 107212861 4 - TSS region transcription start site region 35019
Tssr35020 3 107212862 to 107212877 15 - TSS region transcription start site region 35020
Tssr31177 3 107213373 to 107213399 26 + TSS region transcription start site region 31177
Tssr35021 3 107213412 to 107213421 9 - TSS region transcription start site region 35021
Tssr1007 3 107213422 to 107213426 4 - TSS region transcription start site region 1007
Tssr35022 3 107213435 to 107213450 15 - TSS region transcription start site region 35022
Tssr35023 3 107213452 to 107213459 7 - TSS region transcription start site region 35023
Tssr35024 3 107213466 to 107213471 5 - TSS region transcription start site region 35024
Tssr35025 3 107213473 to 107213477 4 - TSS region transcription start site region 35025
Tssr35026 3 107213479 to 107213511 32 - TSS region transcription start site region 35026
Tssr35027 3 107213524 to 107213529 5 - TSS region transcription start site region 35027
Tssr35028 3 107214246 to 107214277 31 - TSS region transcription start site region 35028
Tssr35029 3 107214278 to 107214316 38 - TSS region transcription start site region 35029
Tssr35030 3 107214760 to 107214766 6 - TSS region transcription start site region 35030
Tssr31178 3 107215945 to 107215966 21 + TSS region transcription start site region 31178
Tssr35031 3 107215953 to 107215958 5 - TSS region transcription start site region 35031
Tssr35032 3 107215961 to 107215974 13 - TSS region transcription start site region 35032
Tssr35033 3 107215977 to 107215989 12 - TSS region transcription start site region 35033
Tssr31179 3 107215980 to 107215992 12 + TSS region transcription start site region 31179
Tssr35034 3 107215993 to 107216047 54 - TSS region transcription start site region 35034
Tssr31180 3 107216006 to 107216015 9 + TSS region transcription start site region 31180
Tssr1008 3 107216042 to 107216051 9 + TSS region transcription start site region 1008
Tssr35035 3 107216049 to 107216074 25 - TSS region transcription start site region 35035
Tssr31181 3 107216055 to 107216070 15 + TSS region transcription start site region 31181
Tssr35036 3 107216082 to 107216095 13 - TSS region transcription start site region 35036
Tssr35037 3 107216102 to 107216131 29 - TSS region transcription start site region 35037
Tssr1009 3 107216221 to 107216225 4 - TSS region transcription start site region 1009
Tssr31182 3 107218121 to 107218127 6 + TSS region transcription start site region 31182
Tssr35038 3 107218138 to 107218146 8 - TSS region transcription start site region 35038
Tssr31183 3 107218145 to 107218150 5 + TSS region transcription start site region 31183
Tssr1010 3 107218157 to 107218164 7 - TSS region transcription start site region 1010
Tssr35039 3 107218164 to 107218172 8 - TSS region transcription start site region 35039
Tssr31184 3 107218164 to 107218213 49 + TSS region transcription start site region 31184
Tssr35040 3 107218193 to 107218195 2 - TSS region transcription start site region 35040
Tssr35041 3 107218200 to 107218208 8 - TSS region transcription start site region 35041
Tssr35042 3 107218212 to 107218242 30 - TSS region transcription start site region 35042
Tssr31185 3 107218601 to 107218634 33 + TSS region transcription start site region 31185
Tssr35043 3 107218644 to 107218745 101 - TSS region transcription start site region 35043
Tssr1011 3 107218666 to 107218674 8 + TSS region transcription start site region 1011
Tssr31186 3 107218680 to 107218689 9 + TSS region transcription start site region 31186
Tssr31187 3 107218692 to 107218697 5 + TSS region transcription start site region 31187
Tssr35044 3 107218747 to 107218752 5 - TSS region transcription start site region 35044
Tssr35045 3 107219009 to 107219056 47 - TSS region transcription start site region 35045
Tssr35046 3 107219214 to 107219235 21 - TSS region transcription start site region 35046
Tssr31188 3 107219625 to 107219631 6 + TSS region transcription start site region 31188
Tssr35047 3 107219651 to 107219686 35 - TSS region transcription start site region 35047
Tssr35048 3 107219701 to 107219741 40 - TSS region transcription start site region 35048
Tssr31189 3 107219707 to 107219730 23 + TSS region transcription start site region 31189
Tssr35049 3 107219748 to 107219760 12 - TSS region transcription start site region 35049
Tssr35050 3 107219769 to 107219775 6 - TSS region transcription start site region 35050
Tssr35051 3 107219780 to 107219785 5 - TSS region transcription start site region 35051
Tssr35052 3 107220409 to 107220414 5 - TSS region transcription start site region 35052
Tssr35053 3 107221722 to 107221738 16 - TSS region transcription start site region 35053
Tssr31190 3 107230456 to 107230467 11 + TSS region transcription start site region 31190
Tssr31191 3 107230608 to 107230617 9 + TSS region transcription start site region 31191
A630076J17Rik 3 107230614 to 107234031 3417 + protein coding gene RIKEN cDNA A630076J17 gene
D3Tem2 3 107231444 to 107231694 250 DNA segment DNA segment, Chr 3, Temple 2
Prok1 3 107232797 to 107239707 6910 - protein coding gene prokineticin 1
Tssr35054 3 107238657 to 107238707 50 - TSS region transcription start site region 35054
Tssr31192 3 107241789 to 107241799 10 + TSS region transcription start site region 31192
Tssr31193 3 107241860 to 107241880 20 + TSS region transcription start site region 31193
Tssr31194 3 107241915 to 107241918 3 + TSS region transcription start site region 31194
D3Tem1 3 107278067 to 107278139 72 DNA segment DNA segment, Chr 3, Temple 1
Tssr31195 3 107278800 to 107278808 8 + TSS region transcription start site region 31195
Tssr31196 3 107278820 to 107278829 9 + TSS region transcription start site region 31196
Tssr31197 3 107278844 to 107278864 20 + TSS region transcription start site region 31197
Cpgi13672 3 107278848 to 107279446 598 CpG island CpG island 13672
Lamtor5 3 107278858 to 107284082 5224 + protein coding gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 5
Tssr31198 3 107278869 to 107278892 23 + TSS region transcription start site region 31198
Tssr31199 3 107278993 to 107279012 19 + TSS region transcription start site region 31199
Tssr31200 3 107279014 to 107279025 11 + TSS region transcription start site region 31200
Tssr31201 3 107279028 to 107279058 30 + TSS region transcription start site region 31201
Tssr31202 3 107279066 to 107279071 5 + TSS region transcription start site region 31202
Tssr31203 3 107291215 to 107291280 65 + TSS region transcription start site region 31203
Slc16a4 3 107291230 to 107312115 20885 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 4
Tssr31204 3 107291285 to 107291301 16 + TSS region transcription start site region 31204
Tssr1012 3 107291302 to 107291304 2 + TSS region transcription start site region 1012
Tssr35055 3 107310366 to 107310370 4 - TSS region transcription start site region 35055
Rbm15 3 107325421 to 107333673 8252 - protein coding gene RNA binding motif protein 15
Tssr35056 3 107326574 to 107326578 4 - TSS region transcription start site region 35056
Tssr35057 3 107329905 to 107329945 40 - TSS region transcription start site region 35057
Cpgi13673 3 107331964 to 107334429 2465 CpG island CpG island 13673
Tssr35058 3 107333012 to 107333023 11 - TSS region transcription start site region 35058
Tssr35059 3 107333024 to 107333069 45 - TSS region transcription start site region 35059
Tssr31205 3 107333789 to 107333802 13 + TSS region transcription start site region 31205
Tssr35060 3 107333953 to 107333973 20 - TSS region transcription start site region 35060
Cpgi13674 3 107342877 to 107343267 390 CpG island CpG island 13674
Tssr31206 3 107342890 to 107342895 5 + TSS region transcription start site region 31206
Gm5279 3 107342964 to 107343674 710 + pseudogene predicted gene 5279
Gm35700 3 107364827 to 107373106 8279 + lncRNA gene predicted gene, 35700
Tssr31207 3 107368376 to 107368383 7 + TSS region transcription start site region 31207
Tssr31208 3 107368384 to 107368389 5 + TSS region transcription start site region 31208
Tssr31209 3 107368419 to 107368429 10 + TSS region transcription start site region 31209
Gm40120 3 107380809 to 107382559 1750 + lncRNA gene predicted gene, 40120
Gm24383 3 107415863 to 107416195 332 - unclassified non-coding RNA gene predicted gene, 24383
Kcnc4 3 107438298 to 107458925 20627 - protein coding gene potassium voltage gated channel, Shaw-related subfamily, member 4