Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:106373055-106763073

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm43212 3 106373206 to 106374307 1101 + pseudogene predicted gene 43212
Chil6 3 106387384 to 106406182 18798 - protein coding gene chitinase-like 6
Tssr34958 3 106406090 to 106406110 20 - TSS region transcription start site region 34958
Tssr1000 3 106465025 to 106465034 9 + TSS region transcription start site region 1000
Gm10673 3 106478282 to 106480867 2585 protein coding gene predicted gene 10673
Gm38244 3 106478283 to 106480868 2585 + unclassified gene predicted gene, 38244
2010016I18Rik 3 106481986 to 106485913 3927 - lncRNA gene RIKEN cDNA 2010016I18 gene
Cpgi13665 3 106482285 to 106482899 614 CpG island CpG island 13665
Tssr31109 3 106482427 to 106482477 50 + TSS region transcription start site region 31109
Dennd2d 3 106482431 to 106503030 20599 + protein coding gene DENN/MADD domain containing 2D
Tssr31110 3 106482557 to 106482571 14 + TSS region transcription start site region 31110
Tssr31111 3 106482607 to 106482660 53 + TSS region transcription start site region 31111
Tssr34959 3 106483435 to 106483437 2 - TSS region transcription start site region 34959
Tssr34960 3 106485882 to 106485888 6 - TSS region transcription start site region 34960
Tssr34961 3 106485903 to 106485926 23 - TSS region transcription start site region 34961
Tssr34962 3 106485928 to 106485960 32 - TSS region transcription start site region 34962
Tssr31112 3 106486009 to 106486057 48 + TSS region transcription start site region 31112
Tssr31113 3 106486059 to 106486092 33 + TSS region transcription start site region 31113
Tssr34963 3 106486333 to 106486336 3 - TSS region transcription start site region 34963
Cept1 3 106502260 to 106547802 45542 - protein coding gene choline/ethanolaminephosphotransferase 1
9030425P06Rik 3 106506164 to 106510561 4397 unclassified non-coding RNA gene RIKEN cDNA 9030425P06 gene
Tssr34964 3 106511462 to 106511467 5 - TSS region transcription start site region 34964
Tssr34965 3 106513536 to 106513540 4 - TSS region transcription start site region 34965
Tssr34966 3 106514081 to 106514087 6 - TSS region transcription start site region 34966
Tssr34967 3 106516101 to 106516116 15 - TSS region transcription start site region 34967
Tssr34968 3 106516135 to 106516173 38 - TSS region transcription start site region 34968
Tssr34969 3 106516271 to 106516283 12 - TSS region transcription start site region 34969
Tssr34970 3 106517015 to 106517020 5 - TSS region transcription start site region 34970
Tssr34971 3 106521792 to 106521802 10 - TSS region transcription start site region 34971
Tssr34972 3 106525454 to 106525503 49 - TSS region transcription start site region 34972
Tssr34973 3 106528142 to 106528190 48 - TSS region transcription start site region 34973
Tssr34974 3 106528251 to 106528271 20 - TSS region transcription start site region 34974
Tssr34975 3 106529250 to 106529281 31 - TSS region transcription start site region 34975
Tssr34976 3 106539451 to 106539472 21 - TSS region transcription start site region 34976
Tssr34977 3 106542164 to 106542192 28 - TSS region transcription start site region 34977
Tssr34978 3 106542199 to 106542212 13 - TSS region transcription start site region 34978
Tssr34979 3 106543195 to 106543199 4 - TSS region transcription start site region 34979
Tssr31114 3 106545880 to 106545899 19 + TSS region transcription start site region 31114
Tssr34980 3 106546161 to 106546172 11 - TSS region transcription start site region 34980
Cpgi13666 3 106547157 to 106548361 1204 CpG island CpG island 13666
Tssr34981 3 106547564 to 106547578 14 - TSS region transcription start site region 34981
Tssr34982 3 106547582 to 106547593 11 - TSS region transcription start site region 34982
Tssr31115 3 106547697 to 106547714 17 + TSS region transcription start site region 31115
Tssr34983 3 106547702 to 106547723 21 - TSS region transcription start site region 34983
Tssr34984 3 106547726 to 106547781 55 - TSS region transcription start site region 34984
Tssr31116 3 106547727 to 106547738 11 + TSS region transcription start site region 31116
Dram2 3 106547798 to 106575341 27543 + protein coding gene DNA-damage regulated autophagy modulator 2
Tssr31117 3 106547822 to 106547888 66 + TSS region transcription start site region 31117
Gm43070 3 106553478 to 106553892 414 - pseudogene predicted gene 43070
Tssr31118 3 106562167 to 106562176 9 + TSS region transcription start site region 31118
Tssr31119 3 106565911 to 106565916 5 + TSS region transcription start site region 31119
Gm43071 3 106567605 to 106569636 2031 + unclassified gene predicted gene 43071
Tssr31120 3 106567864 to 106567876 12 + TSS region transcription start site region 31120
Tssr31121 3 106568055 to 106568073 18 + TSS region transcription start site region 31121
Tssr31122 3 106569343 to 106569360 17 + TSS region transcription start site region 31122
Tssr31123 3 106569422 to 106569438 16 + TSS region transcription start site region 31123
Tssr31124 3 106569607 to 106569621 14 + TSS region transcription start site region 31124
Tssr31125 3 106573725 to 106573737 12 + TSS region transcription start site region 31125
Tssr31126 3 106573783 to 106573795 12 + TSS region transcription start site region 31126
Tssr31127 3 106573898 to 106573909 11 + TSS region transcription start site region 31127
Tssr31128 3 106573972 to 106573989 17 + TSS region transcription start site region 31128
Tssr31129 3 106574028 to 106574040 12 + TSS region transcription start site region 31129
Tssr31130 3 106574042 to 106574069 27 + TSS region transcription start site region 31130
5530402H23Rik 3 106577679 to 106579289 1610 unclassified gene RIKEN cDNA 5530402H23 gene
Gm4549 3 106589259 to 106590861 1602 protein coding gene predicted gene 4549
Gm38271 3 106589260 to 106590862 1602 + unclassified gene predicted gene, 38271
Cpgi13667 3 106684850 to 106685250 400 CpG island CpG island 13667
Tssr34985 3 106684891 to 106684902 11 - TSS region transcription start site region 34985
Tssr31131 3 106684943 to 106685021 78 + TSS region transcription start site region 31131
Lrif1 3 106684987 to 106736577 51590 + protein coding gene ligand dependent nuclear receptor interacting factor 1
Cpgi13668 3 106721491 to 106722466 975 CpG island CpG island 13668
Tssr31132 3 106721672 to 106721733 61 + TSS region transcription start site region 31132
Tssr31133 3 106721792 to 106721803 11 + TSS region transcription start site region 31133
Tssr31134 3 106721809 to 106721822 13 + TSS region transcription start site region 31134
Tssr31135 3 106721853 to 106721864 11 + TSS region transcription start site region 31135
Tssr31136 3 106721873 to 106721876 3 + TSS region transcription start site region 31136
Tssr31137 3 106721898 to 106721954 56 + TSS region transcription start site region 31137
Tssr31138 3 106722132 to 106722139 7 + TSS region transcription start site region 31138
Tssr31139 3 106722225 to 106722258 33 + TSS region transcription start site region 31139
Gm38253 3 106725599 to 106730276 4677 + unclassified gene predicted gene, 38253
Cd53 3 106759921 to 106790149 30228 - protein coding gene CD53 antigen
Tssr34986 3 106760469 to 106760485 16 - TSS region transcription start site region 34986
Tssr34987 3 106760516 to 106760530 14 - TSS region transcription start site region 34987
Tssr34988 3 106760596 to 106760602 6 - TSS region transcription start site region 34988
Tssr34989 3 106760801 to 106760812 11 - TSS region transcription start site region 34989
Tssr34990 3 106762117 to 106762181 64 - TSS region transcription start site region 34990