MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 3:105664657-105744680

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16 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Kcnd3	3	105452330 to 105674002	221672	+	protein coding gene	potassium voltage-gated channel, Shal-related family, member 3
Ddx20	3	105678270 to 105687574	9304	-	protein coding gene	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
Cpgi13660	3	105686824 to 105688081	1257		CpG island	CpG island 13660
Tssr34923	3	105687376 to 105687409	33	-	TSS region	transcription start site region 34923
Tssr34924	3	105687421 to 105687457	36	-	TSS region	transcription start site region 34924
Tssr34925	3	105687552 to 105687591	39	-	TSS region	transcription start site region 34925
Tssr34926	3	105687725 to 105687740	15	-	TSS region	transcription start site region 34926
Tssr34927	3	105687744 to 105687772	28	-	TSS region	transcription start site region 34927
Tssr31078	3	105687753 to 105687767	14	+	TSS region	transcription start site region 31078
Cpgi13661	3	105704521 to 105705536	1015		CpG island	CpG island 13661
Inka2	3	105704599 to 105720842	16243	+	protein coding gene	inka box actin regulator 2
Tssr31079	3	105704657 to 105704680	23	+	TSS region	transcription start site region 31079
Tssr31080	3	105704688 to 105704697	9	+	TSS region	transcription start site region 31080
Gm43848	3	105725901 to 105727147	1246	-	lincRNA gene	predicted gene 43848
Rap1a	3	105727267 to 105801336	74069	-	protein coding gene	RAS-related protein 1a
Gm43328	3	105732444 to 105733877	1433	-	sense intronic lncRNA gene	predicted gene 43328