Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:105556964-106707059

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177 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kcnd3 3 105452330 to 105674002 221672 + protein coding gene potassium voltage-gated channel, Shal-related family, member 3
Tssr31076 3 105558483 to 105558497 14 + TSS region transcription start site region 31076
Tssr996 3 105635691 to 105635693 2 + TSS region transcription start site region 996
Tssr31077 3 105639882 to 105639886 4 + TSS region transcription start site region 31077
Ddx20 3 105678270 to 105687574 9304 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
Cpgi13660 3 105686824 to 105688081 1257 CpG island CpG island 13660
Tssr34923 3 105687376 to 105687409 33 - TSS region transcription start site region 34923
Tssr34924 3 105687421 to 105687457 36 - TSS region transcription start site region 34924
Tssr34925 3 105687552 to 105687591 39 - TSS region transcription start site region 34925
Tssr34926 3 105687725 to 105687740 15 - TSS region transcription start site region 34926
Tssr34927 3 105687744 to 105687772 28 - TSS region transcription start site region 34927
Tssr31078 3 105687753 to 105687767 14 + TSS region transcription start site region 31078
Cpgi13661 3 105704521 to 105705536 1015 CpG island CpG island 13661
Inka2 3 105704599 to 105720842 16243 + protein coding gene inka box actin regulator 2
Tssr31079 3 105704657 to 105704680 23 + TSS region transcription start site region 31079
Tssr31080 3 105704688 to 105704697 9 + TSS region transcription start site region 31080
Gm43848 3 105725901 to 105727147 1246 - lincRNA gene predicted gene 43848
Rap1a 3 105727267 to 105801336 74069 - protein coding gene RAS-related protein 1a
Gm43328 3 105732444 to 105733877 1433 - sense intronic lncRNA gene predicted gene 43328
Gm43329 3 105766966 to 105770197 3231 - sense intronic lncRNA gene predicted gene 43329
Tssr34928 3 105771005 to 105771011 6 - TSS region transcription start site region 34928
Gm43330 3 105782875 to 105785027 2152 - sense intronic lncRNA gene predicted gene 43330
Tssr34929 3 105785856 to 105785860 4 - TSS region transcription start site region 34929
Gm43331 3 105787633 to 105789321 1688 - sense intronic lncRNA gene predicted gene 43331
Cpgi13662 3 105800616 to 105801802 1186 CpG island CpG island 13662
Tssr34930 3 105800675 to 105800687 12 - TSS region transcription start site region 34930
Tssr34931 3 105801299 to 105801315 16 - TSS region transcription start site region 34931
Tssr34932 3 105801323 to 105801377 54 - TSS region transcription start site region 34932
Tssr31081 3 105803591 to 105803602 11 + TSS region transcription start site region 31081
Tssr31082 3 105803622 to 105803633 11 + TSS region transcription start site region 31082
Tssr31083 3 105803920 to 105803941 21 + TSS region transcription start site region 31083
Tssr31084 3 105815530 to 105815555 25 + TSS region transcription start site region 31084
Gm5547 3 105815567 to 105817359 1792 + lincRNA gene predicted gene 5547
Gm46838 3 105821779 to 105825853 4074 - lncRNA gene predicted gene, 46838
Tssr34933 3 105825783 to 105825816 33 - TSS region transcription start site region 34933
Tssr31085 3 105870885 to 105870895 10 + TSS region transcription start site region 31085
Tssr31086 3 105870898 to 105870912 14 + TSS region transcription start site region 31086
Tmigd3 3 105870903 to 105924042 53139 + protein coding gene transmembrane and immunoglobulin domain containing 3
Tssr31087 3 105892032 to 105892052 20 + TSS region transcription start site region 31087
Tssr34934 3 105894618 to 105894629 11 - TSS region transcription start site region 34934
Tssr34935 3 105900830 to 105900841 11 - TSS region transcription start site region 34935
Tssr31088 3 105904377 to 105904423 46 + TSS region transcription start site region 31088
Adora3 3 105904421 to 105908928 4507 + protein coding gene adenosine A3 receptor
Tssr31089 3 105904691 to 105904699 8 + TSS region transcription start site region 31089
Tssr31090 3 105907561 to 105907566 5 + TSS region transcription start site region 31090
Tssr31091 3 105914134 to 105914151 17 + TSS region transcription start site region 31091
I830077J02Rik 3 105925799 to 105932930 7131 - protein coding gene RIKEN cDNA I830077J02 gene
Tssr34936 3 105928760 to 105928780 20 - TSS region transcription start site region 34936
Tssr34937 3 105931245 to 105931277 32 - TSS region transcription start site region 34937
Tssr34938 3 105932590 to 105932622 32 - TSS region transcription start site region 34938
Tssr34939 3 105932625 to 105932630 5 - TSS region transcription start site region 34939
Tssr34940 3 105932638 to 105932647 9 - TSS region transcription start site region 34940
Tssr34941 3 105932665 to 105932679 14 - TSS region transcription start site region 34941
Tssr34942 3 105932687 to 105932711 24 - TSS region transcription start site region 34942
Tssr34943 3 105936267 to 105936272 5 - TSS region transcription start site region 34943
Atp5f1 3 105942698 to 105960099 17401 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
Cpgi13663 3 105958775 to 105960067 1292 CpG island CpG island 13663
Tssr997 3 105959199 to 105959211 12 - TSS region transcription start site region 997
Tssr34944 3 105959212 to 105959237 25 - TSS region transcription start site region 34944
Tssr34945 3 105959252 to 105959280 28 - TSS region transcription start site region 34945
Tssr31092 3 105959410 to 105959427 17 + TSS region transcription start site region 31092
Tssr31093 3 105959453 to 105959541 88 + TSS region transcription start site region 31093
Wdr77 3 105959498 to 105969760 10262 + protein coding gene WD repeat domain 77
Gm42890 3 105959503 to 105984600 25097 + unclassified non-coding RNA gene predicted gene 42890
Tssr31094 3 105965077 to 105965105 28 + TSS region transcription start site region 31094
Tssr31095 3 105973790 to 105973809 19 + TSS region transcription start site region 31095
Ovgp1 3 105973802 to 105987423 13621 + protein coding gene oviductal glycoprotein 1
Tssr31096 3 105974974 to 105974977 3 + TSS region transcription start site region 31096
Tssr31097 3 105977786 to 105977791 5 + TSS region transcription start site region 31097
Tssr31098 3 105985083 to 105985098 15 + TSS region transcription start site region 31098
Tssr31099 3 105986155 to 105986162 7 + TSS region transcription start site region 31099
Tssr31100 3 105987377 to 105987380 3 + TSS region transcription start site region 31100
Pifo 3 105996957 to 106014646 17689 - protein coding gene primary cilia formation
Cpgi13664 3 106001356 to 106001561 205 CpG island CpG island 13664
Tssr34946 3 106001451 to 106001471 20 - TSS region transcription start site region 34946
Tssr34947 3 106001474 to 106001513 39 - TSS region transcription start site region 34947
Gm42722 3 106001561 to 106017539 15978 + antisense lncRNA gene predicted gene 42722
Tssr31101 3 106001578 to 106001621 43 + TSS region transcription start site region 31101
Gm42721 3 106007865 to 106009387 1522 - sense intronic lncRNA gene predicted gene 42721
Tssr34948 3 106014598 to 106014607 9 - TSS region transcription start site region 34948
Tssr34949 3 106014609 to 106014624 15 - TSS region transcription start site region 34949
Tssr34950 3 106014630 to 106014643 13 - TSS region transcription start site region 34950
Chil5 3 106016919 to 106032814 15895 - protein coding gene chitinase-like 5
Tssr34951 3 106032879 to 106032888 9 - TSS region transcription start site region 34951
Tssr34952 3 106032893 to 106032904 11 - TSS region transcription start site region 34952
Tssr34953 3 106032905 to 106032953 48 - TSS region transcription start site region 34953
Tssr31102 3 106034661 to 106034692 31 + TSS region transcription start site region 31102
Gm4540 3 106034664 to 106035065 401 + pseudogene predicted gene 4540
Tssr31103 3 106034778 to 106034818 40 + TSS region transcription start site region 31103
Gm9504 3 106042964 to 106043431 467 - pseudogene predicted gene 9504
Gm4248 3 106091034 to 106091349 315 + pseudogene predicted pseudogene 4248
Tssr31104 3 106113361 to 106113378 17 + TSS region transcription start site region 31104
Chia1 3 106113382 to 106132118 18736 + protein coding gene chitinase, acidic 1
Tssr998 3 106130920 to 106130923 3 + TSS region transcription start site region 998
Tssr31105 3 106131860 to 106131869 9 + TSS region transcription start site region 31105
Tssr31106 3 106131925 to 106131960 35 + TSS region transcription start site region 31106
Tssr31107 3 106131964 to 106132059 95 + TSS region transcription start site region 31107
Chil3 3 106147554 to 106167564 20010 - protein coding gene chitinase-like 3
Tssr31108 3 106147555 to 106147556 1 + TSS region transcription start site region 31108
Tssr34954 3 106149774 to 106149792 18 - TSS region transcription start site region 34954
Tssr34955 3 106163369 to 106163375 6 - TSS region transcription start site region 34955
Tssr34956 3 106166210 to 106166245 35 - TSS region transcription start site region 34956
Gm43709 3 106177832 to 106179175 1343 - pseudogene predicted gene 43709
Chil4 3 106201491 to 106219479 17988 - protein coding gene chitinase-like 4
Tssr34957 3 106219477 to 106219483 6 - TSS region transcription start site region 34957
Gm6522 3 106275744 to 106299027 23283 + pseudogene predicted gene 6522
Tssr999 3 106349646 to 106349648 2 - TSS region transcription start site region 999
Gm43212 3 106373206 to 106374307 1101 + pseudogene predicted gene 43212
Chil6 3 106387384 to 106406182 18798 - protein coding gene chitinase-like 6
Tssr34958 3 106406090 to 106406110 20 - TSS region transcription start site region 34958
Tssr1000 3 106465025 to 106465034 9 + TSS region transcription start site region 1000
Gm10673 3 106478282 to 106480867 2585 protein coding gene predicted gene 10673
Gm38244 3 106478283 to 106480868 2585 + unclassified gene predicted gene, 38244
2010016I18Rik 3 106481986 to 106485913 3927 - lncRNA gene RIKEN cDNA 2010016I18 gene
Cpgi13665 3 106482285 to 106482899 614 CpG island CpG island 13665
Tssr31109 3 106482427 to 106482477 50 + TSS region transcription start site region 31109
Dennd2d 3 106482431 to 106503030 20599 + protein coding gene DENN/MADD domain containing 2D
Tssr31110 3 106482557 to 106482571 14 + TSS region transcription start site region 31110
Tssr31111 3 106482607 to 106482660 53 + TSS region transcription start site region 31111
Tssr34959 3 106483435 to 106483437 2 - TSS region transcription start site region 34959
Tssr34960 3 106485882 to 106485888 6 - TSS region transcription start site region 34960
Tssr34961 3 106485903 to 106485926 23 - TSS region transcription start site region 34961
Tssr34962 3 106485928 to 106485960 32 - TSS region transcription start site region 34962
Tssr31112 3 106486009 to 106486057 48 + TSS region transcription start site region 31112
Tssr31113 3 106486059 to 106486092 33 + TSS region transcription start site region 31113
Tssr34963 3 106486333 to 106486336 3 - TSS region transcription start site region 34963
Cept1 3 106502260 to 106547802 45542 - protein coding gene choline/ethanolaminephosphotransferase 1
9030425P06Rik 3 106506164 to 106510561 4397 unclassified non-coding RNA gene RIKEN cDNA 9030425P06 gene
Tssr34964 3 106511462 to 106511467 5 - TSS region transcription start site region 34964
Tssr34965 3 106513536 to 106513540 4 - TSS region transcription start site region 34965
Tssr34966 3 106514081 to 106514087 6 - TSS region transcription start site region 34966
Tssr34967 3 106516101 to 106516116 15 - TSS region transcription start site region 34967
Tssr34968 3 106516135 to 106516173 38 - TSS region transcription start site region 34968
Tssr34969 3 106516271 to 106516283 12 - TSS region transcription start site region 34969
Tssr34970 3 106517015 to 106517020 5 - TSS region transcription start site region 34970
Tssr34971 3 106521792 to 106521802 10 - TSS region transcription start site region 34971
Tssr34972 3 106525454 to 106525503 49 - TSS region transcription start site region 34972
Tssr34973 3 106528142 to 106528190 48 - TSS region transcription start site region 34973
Tssr34974 3 106528251 to 106528271 20 - TSS region transcription start site region 34974
Tssr34975 3 106529250 to 106529281 31 - TSS region transcription start site region 34975
Tssr34976 3 106539451 to 106539472 21 - TSS region transcription start site region 34976
Tssr34977 3 106542164 to 106542192 28 - TSS region transcription start site region 34977
Tssr34978 3 106542199 to 106542212 13 - TSS region transcription start site region 34978
Tssr34979 3 106543195 to 106543199 4 - TSS region transcription start site region 34979
Tssr31114 3 106545880 to 106545899 19 + TSS region transcription start site region 31114
Tssr34980 3 106546161 to 106546172 11 - TSS region transcription start site region 34980
Cpgi13666 3 106547157 to 106548361 1204 CpG island CpG island 13666
Tssr34981 3 106547564 to 106547578 14 - TSS region transcription start site region 34981
Tssr34982 3 106547582 to 106547593 11 - TSS region transcription start site region 34982
Tssr31115 3 106547697 to 106547714 17 + TSS region transcription start site region 31115
Tssr34983 3 106547702 to 106547723 21 - TSS region transcription start site region 34983
Tssr34984 3 106547726 to 106547781 55 - TSS region transcription start site region 34984
Tssr31116 3 106547727 to 106547738 11 + TSS region transcription start site region 31116
Dram2 3 106547798 to 106575341 27543 + protein coding gene DNA-damage regulated autophagy modulator 2
Tssr31117 3 106547822 to 106547888 66 + TSS region transcription start site region 31117
Gm43070 3 106553478 to 106553892 414 - pseudogene predicted gene 43070
Tssr31118 3 106562167 to 106562176 9 + TSS region transcription start site region 31118
Tssr31119 3 106565911 to 106565916 5 + TSS region transcription start site region 31119
Gm43071 3 106567605 to 106569636 2031 + unclassified gene predicted gene 43071
Tssr31120 3 106567864 to 106567876 12 + TSS region transcription start site region 31120
Tssr31121 3 106568055 to 106568073 18 + TSS region transcription start site region 31121
Tssr31122 3 106569343 to 106569360 17 + TSS region transcription start site region 31122
Tssr31123 3 106569422 to 106569438 16 + TSS region transcription start site region 31123
Tssr31124 3 106569607 to 106569621 14 + TSS region transcription start site region 31124
Tssr31125 3 106573725 to 106573737 12 + TSS region transcription start site region 31125
Tssr31126 3 106573783 to 106573795 12 + TSS region transcription start site region 31126
Tssr31127 3 106573898 to 106573909 11 + TSS region transcription start site region 31127
Tssr31128 3 106573972 to 106573989 17 + TSS region transcription start site region 31128
Tssr31129 3 106574028 to 106574040 12 + TSS region transcription start site region 31129
Tssr31130 3 106574042 to 106574069 27 + TSS region transcription start site region 31130
5530402H23Rik 3 106577679 to 106579289 1610 unclassified gene RIKEN cDNA 5530402H23 gene
Gm4549 3 106589259 to 106590861 1602 protein coding gene predicted gene 4549
Gm38271 3 106589260 to 106590862 1602 + unclassified gene predicted gene, 38271
Cpgi13667 3 106684850 to 106685250 400 CpG island CpG island 13667
Tssr34985 3 106684891 to 106684902 11 - TSS region transcription start site region 34985
Tssr31131 3 106684943 to 106685021 78 + TSS region transcription start site region 31131
Lrif1 3 106684987 to 106736577 51590 + protein coding gene ligand dependent nuclear receptor interacting factor 1