Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:105388483-105728497

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr34919 3 105426534 to 105426541 7 - TSS region transcription start site region 34919
Tssr34920 3 105426562 to 105426569 7 - TSS region transcription start site region 34920
Tssr34921 3 105426590 to 105426601 11 - TSS region transcription start site region 34921
Kcnd3os 3 105448190 to 105452955 4765 - antisense lncRNA gene potassium voltage-gated channel, Shal-related family, member 3, opposite strand
Cpgi13659 3 105451007 to 105453212 2205 CpG island CpG island 13659
Tssr31069 3 105451849 to 105451937 88 + TSS region transcription start site region 31069
Tssr31070 3 105451967 to 105451974 7 + TSS region transcription start site region 31070
Tssr31071 3 105452104 to 105452145 41 + TSS region transcription start site region 31071
Tssr31072 3 105452149 to 105452177 28 + TSS region transcription start site region 31072
Tssr31073 3 105452326 to 105452365 39 + TSS region transcription start site region 31073
Kcnd3 3 105452330 to 105674002 221672 + protein coding gene potassium voltage-gated channel, Shal-related family, member 3
Tssr34922 3 105488033 to 105488064 31 - TSS region transcription start site region 34922
Tssr31074 3 105491534 to 105491544 10 + TSS region transcription start site region 31074
Gm43847 3 105502907 to 105504846 1939 + sense intronic lncRNA gene predicted gene 43847
Tssr31075 3 105526051 to 105526061 10 + TSS region transcription start site region 31075
Tssr31076 3 105558483 to 105558497 14 + TSS region transcription start site region 31076
Tssr996 3 105635691 to 105635693 2 + TSS region transcription start site region 996
Tssr31077 3 105639882 to 105639886 4 + TSS region transcription start site region 31077
Ddx20 3 105678270 to 105687574 9304 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
Cpgi13660 3 105686824 to 105688081 1257 CpG island CpG island 13660
Tssr34923 3 105687376 to 105687409 33 - TSS region transcription start site region 34923
Tssr34924 3 105687421 to 105687457 36 - TSS region transcription start site region 34924
Tssr34925 3 105687552 to 105687591 39 - TSS region transcription start site region 34925
Tssr34926 3 105687725 to 105687740 15 - TSS region transcription start site region 34926
Tssr34927 3 105687744 to 105687772 28 - TSS region transcription start site region 34927
Tssr31078 3 105687753 to 105687767 14 + TSS region transcription start site region 31078
Cpgi13661 3 105704521 to 105705536 1015 CpG island CpG island 13661
Inka2 3 105704599 to 105720842 16243 + protein coding gene inka box actin regulator 2
Tssr31079 3 105704657 to 105704680 23 + TSS region transcription start site region 31079
Tssr31080 3 105704688 to 105704697 9 + TSS region transcription start site region 31080
Gm43848 3 105725901 to 105727147 1246 - lincRNA gene predicted gene 43848
Rap1a 3 105727267 to 105801336 74069 - protein coding gene RAS-related protein 1a