Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:105017330-106109002

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cttnbp2nl 3 105001915 to 105053146 51231 - protein coding gene CTTNBP2 N-terminal like
Gm40116 3 105008062 to 105017762 9700 + lncRNA gene predicted gene, 40116
Tssr34912 3 105019964 to 105019968 4 - TSS region transcription start site region 34912
Tssr34913 3 105052560 to 105052574 14 - TSS region transcription start site region 34913
Cpgi13657 3 105052575 to 105053243 668 CpG island CpG island 13657
Tssr34914 3 105052687 to 105052717 30 - TSS region transcription start site region 34914
Tssr34915 3 105052916 to 105052938 22 - TSS region transcription start site region 34915
Tssr34916 3 105052948 to 105052987 39 - TSS region transcription start site region 34916
Tssr34917 3 105053125 to 105053151 26 - TSS region transcription start site region 34917
Tssr34918 3 105054876 to 105054884 8 - TSS region transcription start site region 34918
Cpgi13658 3 105058849 to 105059011 162 CpG island CpG island 13658
4930564D02Rik 3 105066844 to 105078806 11962 + protein coding gene RIKEN cDNA 4930564D02 gene
Tssr31068 3 105094991 to 105094996 5 + TSS region transcription start site region 31068
Gm40118 3 105107398 to 105134972 27574 + lncRNA gene predicted gene, 40118
Gm34837 3 105355052 to 105368345 13293 + lncRNA gene predicted gene, 34837
Tssr34919 3 105426534 to 105426541 7 - TSS region transcription start site region 34919
Tssr34920 3 105426562 to 105426569 7 - TSS region transcription start site region 34920
Tssr34921 3 105426590 to 105426601 11 - TSS region transcription start site region 34921
Kcnd3os 3 105448190 to 105452955 4765 - antisense lncRNA gene potassium voltage-gated channel, Shal-related family, member 3, opposite strand
Cpgi13659 3 105451007 to 105453212 2205 CpG island CpG island 13659
Tssr31069 3 105451849 to 105451937 88 + TSS region transcription start site region 31069
Tssr31070 3 105451967 to 105451974 7 + TSS region transcription start site region 31070
Tssr31071 3 105452104 to 105452145 41 + TSS region transcription start site region 31071
Tssr31072 3 105452149 to 105452177 28 + TSS region transcription start site region 31072
Tssr31073 3 105452326 to 105452365 39 + TSS region transcription start site region 31073
Kcnd3 3 105452330 to 105674002 221672 + protein coding gene potassium voltage-gated channel, Shal-related family, member 3
Tssr34922 3 105488033 to 105488064 31 - TSS region transcription start site region 34922
Tssr31074 3 105491534 to 105491544 10 + TSS region transcription start site region 31074
Gm43847 3 105502907 to 105504846 1939 + sense intronic lncRNA gene predicted gene 43847
Tssr31075 3 105526051 to 105526061 10 + TSS region transcription start site region 31075
Tssr31076 3 105558483 to 105558497 14 + TSS region transcription start site region 31076
Tssr996 3 105635691 to 105635693 2 + TSS region transcription start site region 996
Tssr31077 3 105639882 to 105639886 4 + TSS region transcription start site region 31077
Ddx20 3 105678270 to 105687574 9304 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
Cpgi13660 3 105686824 to 105688081 1257 CpG island CpG island 13660
Tssr34923 3 105687376 to 105687409 33 - TSS region transcription start site region 34923
Tssr34924 3 105687421 to 105687457 36 - TSS region transcription start site region 34924
Tssr34925 3 105687552 to 105687591 39 - TSS region transcription start site region 34925
Tssr34926 3 105687725 to 105687740 15 - TSS region transcription start site region 34926
Tssr34927 3 105687744 to 105687772 28 - TSS region transcription start site region 34927
Tssr31078 3 105687753 to 105687767 14 + TSS region transcription start site region 31078
Cpgi13661 3 105704521 to 105705536 1015 CpG island CpG island 13661
Inka2 3 105704599 to 105720842 16243 + protein coding gene inka box actin regulator 2
Tssr31079 3 105704657 to 105704680 23 + TSS region transcription start site region 31079
Tssr31080 3 105704688 to 105704697 9 + TSS region transcription start site region 31080
Gm43848 3 105725901 to 105727147 1246 - lincRNA gene predicted gene 43848
Rap1a 3 105727267 to 105801336 74069 - protein coding gene RAS-related protein 1a
Gm43328 3 105732444 to 105733877 1433 - sense intronic lncRNA gene predicted gene 43328
Gm43329 3 105766966 to 105770197 3231 - sense intronic lncRNA gene predicted gene 43329
Tssr34928 3 105771005 to 105771011 6 - TSS region transcription start site region 34928
Gm43330 3 105782875 to 105785027 2152 - sense intronic lncRNA gene predicted gene 43330
Tssr34929 3 105785856 to 105785860 4 - TSS region transcription start site region 34929
Gm43331 3 105787633 to 105789321 1688 - sense intronic lncRNA gene predicted gene 43331
Cpgi13662 3 105800616 to 105801802 1186 CpG island CpG island 13662
Tssr34930 3 105800675 to 105800687 12 - TSS region transcription start site region 34930
Tssr34931 3 105801299 to 105801315 16 - TSS region transcription start site region 34931
Tssr34932 3 105801323 to 105801377 54 - TSS region transcription start site region 34932
Tssr31081 3 105803591 to 105803602 11 + TSS region transcription start site region 31081
Tssr31082 3 105803622 to 105803633 11 + TSS region transcription start site region 31082
Tssr31083 3 105803920 to 105803941 21 + TSS region transcription start site region 31083
Tssr31084 3 105815530 to 105815555 25 + TSS region transcription start site region 31084
Gm5547 3 105815567 to 105817359 1792 + lincRNA gene predicted gene 5547
Gm46838 3 105821779 to 105825853 4074 - lncRNA gene predicted gene, 46838
Tssr34933 3 105825783 to 105825816 33 - TSS region transcription start site region 34933
Tssr31085 3 105870885 to 105870895 10 + TSS region transcription start site region 31085
Tssr31086 3 105870898 to 105870912 14 + TSS region transcription start site region 31086
Tmigd3 3 105870903 to 105924042 53139 + protein coding gene transmembrane and immunoglobulin domain containing 3
Tssr31087 3 105892032 to 105892052 20 + TSS region transcription start site region 31087
Tssr34934 3 105894618 to 105894629 11 - TSS region transcription start site region 34934
Tssr34935 3 105900830 to 105900841 11 - TSS region transcription start site region 34935
Tssr31088 3 105904377 to 105904423 46 + TSS region transcription start site region 31088
Adora3 3 105904421 to 105908928 4507 + protein coding gene adenosine A3 receptor
Tssr31089 3 105904691 to 105904699 8 + TSS region transcription start site region 31089
Tssr31090 3 105907561 to 105907566 5 + TSS region transcription start site region 31090
Tssr31091 3 105914134 to 105914151 17 + TSS region transcription start site region 31091
I830077J02Rik 3 105925799 to 105932930 7131 - protein coding gene RIKEN cDNA I830077J02 gene
Tssr34936 3 105928760 to 105928780 20 - TSS region transcription start site region 34936
Tssr34937 3 105931245 to 105931277 32 - TSS region transcription start site region 34937
Tssr34938 3 105932590 to 105932622 32 - TSS region transcription start site region 34938
Tssr34939 3 105932625 to 105932630 5 - TSS region transcription start site region 34939
Tssr34940 3 105932638 to 105932647 9 - TSS region transcription start site region 34940
Tssr34941 3 105932665 to 105932679 14 - TSS region transcription start site region 34941
Tssr34942 3 105932687 to 105932711 24 - TSS region transcription start site region 34942
Tssr34943 3 105936267 to 105936272 5 - TSS region transcription start site region 34943
Atp5f1 3 105942698 to 105960099 17401 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
Cpgi13663 3 105958775 to 105960067 1292 CpG island CpG island 13663
Tssr997 3 105959199 to 105959211 12 - TSS region transcription start site region 997
Tssr34944 3 105959212 to 105959237 25 - TSS region transcription start site region 34944
Tssr34945 3 105959252 to 105959280 28 - TSS region transcription start site region 34945
Tssr31092 3 105959410 to 105959427 17 + TSS region transcription start site region 31092
Tssr31093 3 105959453 to 105959541 88 + TSS region transcription start site region 31093
Wdr77 3 105959498 to 105969760 10262 + protein coding gene WD repeat domain 77
Gm42890 3 105959503 to 105984600 25097 + unclassified non-coding RNA gene predicted gene 42890
Tssr31094 3 105965077 to 105965105 28 + TSS region transcription start site region 31094
Tssr31095 3 105973790 to 105973809 19 + TSS region transcription start site region 31095
Ovgp1 3 105973802 to 105987423 13621 + protein coding gene oviductal glycoprotein 1
Tssr31096 3 105974974 to 105974977 3 + TSS region transcription start site region 31096
Tssr31097 3 105977786 to 105977791 5 + TSS region transcription start site region 31097
Tssr31098 3 105985083 to 105985098 15 + TSS region transcription start site region 31098
Tssr31099 3 105986155 to 105986162 7 + TSS region transcription start site region 31099
Tssr31100 3 105987377 to 105987380 3 + TSS region transcription start site region 31100
Pifo 3 105996957 to 106014646 17689 - protein coding gene primary cilia formation
Cpgi13664 3 106001356 to 106001561 205 CpG island CpG island 13664
Tssr34946 3 106001451 to 106001471 20 - TSS region transcription start site region 34946
Tssr34947 3 106001474 to 106001513 39 - TSS region transcription start site region 34947
Gm42722 3 106001561 to 106017539 15978 + antisense lncRNA gene predicted gene 42722
Tssr31101 3 106001578 to 106001621 43 + TSS region transcription start site region 31101
Gm42721 3 106007865 to 106009387 1522 - sense intronic lncRNA gene predicted gene 42721
Tssr34948 3 106014598 to 106014607 9 - TSS region transcription start site region 34948
Tssr34949 3 106014609 to 106014624 15 - TSS region transcription start site region 34949
Tssr34950 3 106014630 to 106014643 13 - TSS region transcription start site region 34950
Chil5 3 106016919 to 106032814 15895 - protein coding gene chitinase-like 5
Tssr34951 3 106032879 to 106032888 9 - TSS region transcription start site region 34951
Tssr34952 3 106032893 to 106032904 11 - TSS region transcription start site region 34952
Tssr34953 3 106032905 to 106032953 48 - TSS region transcription start site region 34953
Tssr31102 3 106034661 to 106034692 31 + TSS region transcription start site region 31102
Gm4540 3 106034664 to 106035065 401 + pseudogene predicted gene 4540
Tssr31103 3 106034778 to 106034818 40 + TSS region transcription start site region 31103
Gm9504 3 106042964 to 106043431 467 - pseudogene predicted gene 9504
Gm4248 3 106091034 to 106091349 315 + pseudogene predicted pseudogene 4248