Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:104371622-104771843

42 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm38412	3	104409161 to 104417535	8374	+	antisense lncRNA gene	predicted gene, 38412
Gm9273	3	104417613 to 104418327	714	-	pseudogene	predicted gene 9273
Lrig2	3	104453980 to 104511918	57938	-	protein coding gene	leucine-rich repeats and immunoglobulin-like domains 2
Tssr34878	3	104454586 to 104454590	4	-	TSS region	transcription start site region 34878
Tssr31044	3	104456623 to 104456625	2	+	TSS region	transcription start site region 31044
Gm43696	3	104470660 to 104476730	6070	-	sense intronic lncRNA gene	predicted gene 43696
Tssr34879	3	104476704 to 104476707	3	-	TSS region	transcription start site region 34879
Tssr994	3	104478802 to 104478823	21	+	TSS region	transcription start site region 994
A530041M06Rik	3	104499320 to 104501607	2287	-	sense intronic lncRNA gene	RIKEN cDNA A530041M06 gene
4930509H03Rik	3	104510099 to 104511313	1214	-	sense intronic lncRNA gene	RIKEN cDNA 4930509H03 gene
Cpgi13644	3	104511255 to 104512434	1179		CpG island	CpG island 13644
Tssr995	3	104511749 to 104511758	9	-	TSS region	transcription start site region 995
Tssr34880	3	104511812 to 104511933	121	-	TSS region	transcription start site region 34880
Tssr34881	3	104523684 to 104523700	16	-	TSS region	transcription start site region 34881
Tssr34882	3	104523770 to 104523789	19	-	TSS region	transcription start site region 34882
Gm34490	3	104555386 to 104571857	16471	+	lncRNA gene	predicted gene, 34490
D3Ertd711e	3	104571622 to 104571843	221		DNA segment	DNA segment, Chr 3, ERATO Doi 711, expressed
Gm26091	3	104601158 to 104601239	81	-	snRNA gene	predicted gene, 26091
Gm43582	3	104634315 to 104634657	342	-	pseudogene	predicted gene 43582
Tssr34883	3	104637557 to 104637561	4	-	TSS region	transcription start site region 34883
Cpgi13645	3	104637961 to 104639592	1631		CpG island	CpG island 13645
Tssr34884	3	104638429 to 104638442	13	-	TSS region	transcription start site region 34884
Tssr34885	3	104638532 to 104638542	10	-	TSS region	transcription start site region 34885
Tssr31045	3	104638658 to 104638675	17	+	TSS region	transcription start site region 31045
Slc16a1	3	104638668 to 104658462	19794	+	protein coding gene	solute carrier family 16 (monocarboxylic acid transporters), member 1
Gm43581	3	104642994 to 104645857	2863	+	sense intronic lncRNA gene	predicted gene 43581
Tssr31046	3	104645032 to 104645036	4	+	TSS region	transcription start site region 31046
Gm43585	3	104646241 to 104647643	1402	+	sense intronic lncRNA gene	predicted gene 43585
Tssr31047	3	104655867 to 104655869	2	+	TSS region	transcription start site region 31047
Tssr31048	3	104657090 to 104657094	4	+	TSS region	transcription start site region 31048
Gm29561	3	104661343 to 104664139	2796	-	lincRNA gene	predicted gene 29561
Gm29560	3	104667032 to 104670010	2978	-	protein coding gene	predicted gene 29560
Cpgi13646	3	104675349 to 104675681	332		CpG island	CpG island 13646
Gm34548	3	104677551 to 104680628	3077	-	lncRNA gene	predicted gene, 34548
Gm24223	3	104700870 to 104700959	89	+	snRNA gene	predicted gene, 24223
Cpgi13647	3	104700981 to 104701263	282		CpG island	CpG island 13647
Gm29572	3	104706585 to 104710910	4325	+	protein coding gene	predicted gene 29572
Gm6485	3	104752727 to 104753165	438	-	pseudogene	predicted gene 6485
Gm43584	3	104753123 to 104773270	20147	-	unclassified non-coding RNA gene	predicted gene 43584
Cpgi13648	3	104758389 to 104758717	328		CpG island	CpG island 13648
Tafa3	3	104767405 to 104779589	12184	-	protein coding gene	TAFA chemokine like family member 3
Tssr31049	3	104771734 to 104771742	8	+	TSS region	transcription start site region 31049