Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:104263684-104783700

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Twq3 3 104320699 to 104320699 0 QTL testis weight QTL 3
Gm5546 3 104351783 to 104360318 8535 - lincRNA gene predicted gene 5546
Gm38412 3 104409161 to 104417535 8374 + antisense lncRNA gene predicted gene, 38412
Gm9273 3 104417613 to 104418327 714 - pseudogene predicted gene 9273
Lrig2 3 104453980 to 104511918 57938 - protein coding gene leucine-rich repeats and immunoglobulin-like domains 2
Tssr34878 3 104454586 to 104454590 4 - TSS region transcription start site region 34878
Tssr31044 3 104456623 to 104456625 2 + TSS region transcription start site region 31044
Gm43696 3 104470660 to 104476730 6070 - sense intronic lncRNA gene predicted gene 43696
Tssr34879 3 104476704 to 104476707 3 - TSS region transcription start site region 34879
Tssr994 3 104478802 to 104478823 21 + TSS region transcription start site region 994
A530041M06Rik 3 104499320 to 104501607 2287 - sense intronic lncRNA gene RIKEN cDNA A530041M06 gene
4930509H03Rik 3 104510099 to 104511313 1214 - sense intronic lncRNA gene RIKEN cDNA 4930509H03 gene
Cpgi13644 3 104511255 to 104512434 1179 CpG island CpG island 13644
Tssr995 3 104511749 to 104511758 9 - TSS region transcription start site region 995
Tssr34880 3 104511812 to 104511933 121 - TSS region transcription start site region 34880
Tssr34881 3 104523684 to 104523700 16 - TSS region transcription start site region 34881
Tssr34882 3 104523770 to 104523789 19 - TSS region transcription start site region 34882
Gm34490 3 104555386 to 104571857 16471 + lncRNA gene predicted gene, 34490
D3Ertd711e 3 104571622 to 104571843 221 DNA segment DNA segment, Chr 3, ERATO Doi 711, expressed
Gm26091 3 104601158 to 104601239 81 - snRNA gene predicted gene, 26091
Gm43582 3 104634315 to 104634657 342 - pseudogene predicted gene 43582
Tssr34883 3 104637557 to 104637561 4 - TSS region transcription start site region 34883
Cpgi13645 3 104637961 to 104639592 1631 CpG island CpG island 13645
Tssr34884 3 104638429 to 104638442 13 - TSS region transcription start site region 34884
Tssr34885 3 104638532 to 104638542 10 - TSS region transcription start site region 34885
Tssr31045 3 104638658 to 104638675 17 + TSS region transcription start site region 31045
Slc16a1 3 104638668 to 104658462 19794 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 1
Gm43581 3 104642994 to 104645857 2863 + sense intronic lncRNA gene predicted gene 43581
Tssr31046 3 104645032 to 104645036 4 + TSS region transcription start site region 31046
Gm43585 3 104646241 to 104647643 1402 + sense intronic lncRNA gene predicted gene 43585
Tssr31047 3 104655867 to 104655869 2 + TSS region transcription start site region 31047
Tssr31048 3 104657090 to 104657094 4 + TSS region transcription start site region 31048
Gm29561 3 104661343 to 104664139 2796 - lincRNA gene predicted gene 29561
Gm29560 3 104667032 to 104670010 2978 - protein coding gene predicted gene 29560
Cpgi13646 3 104675349 to 104675681 332 CpG island CpG island 13646
Gm34548 3 104677551 to 104680628 3077 - lncRNA gene predicted gene, 34548
Gm24223 3 104700870 to 104700959 89 + snRNA gene predicted gene, 24223
Cpgi13647 3 104700981 to 104701263 282 CpG island CpG island 13647
Gm29572 3 104706585 to 104710910 4325 + protein coding gene predicted gene 29572
Gm6485 3 104752727 to 104753165 438 - pseudogene predicted gene 6485
Gm43584 3 104753123 to 104773270 20147 - unclassified non-coding RNA gene predicted gene 43584
Cpgi13648 3 104758389 to 104758717 328 CpG island CpG island 13648
Tafa3 3 104767405 to 104779589 12184 - protein coding gene TAFA chemokine like family member 3
Tssr31049 3 104771734 to 104771742 8 + TSS region transcription start site region 31049
Tssr34886 3 104776249 to 104776251 2 - TSS region transcription start site region 34886
Tssr34887 3 104777231 to 104777235 4 - TSS region transcription start site region 34887
Cpgi13649 3 104777244 to 104777595 351 CpG island CpG island 13649
Tssr34888 3 104777483 to 104777493 10 - TSS region transcription start site region 34888
Cpgi13650 3 104780804 to 104781931 1127 CpG island CpG island 13650
Tssr31050 3 104780821 to 104780829 8 + TSS region transcription start site region 31050
Tssr34889 3 104780987 to 104781002 15 - TSS region transcription start site region 34889
Tssr31051 3 104781048 to 104781128 80 + TSS region transcription start site region 31051
Ppm1j 3 104781056 to 104786018 4962 + protein coding gene protein phosphatase 1J
Tssr31052 3 104781129 to 104781143 14 + TSS region transcription start site region 31052
Tssr31053 3 104782321 to 104782336 15 + TSS region transcription start site region 31053
Tssr31054 3 104782338 to 104782352 14 + TSS region transcription start site region 31054
Tssr31055 3 104782363 to 104782380 17 + TSS region transcription start site region 31055