Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:103906783-104805318

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptpn22 3 103859795 to 103912247 52452 + protein coding gene protein tyrosine phosphatase, non-receptor type 22 (lymphoid)
Tssr31032 3 103908035 to 103908083 48 + TSS region transcription start site region 31032
Cpgi13641 3 103913856 to 103915412 1556 CpG island CpG island 13641
Tssr31033 3 103914099 to 103914118 19 + TSS region transcription start site region 31033
Rsbn1 3 103914120 to 103966636 52516 + protein coding gene rosbin, round spermatid basic protein 1
Tssr34871 3 103914178 to 103914186 8 - TSS region transcription start site region 34871
Tssr993 3 103914242 to 103914244 2 + TSS region transcription start site region 993
Tssr31034 3 103914371 to 103914405 34 + TSS region transcription start site region 31034
Tssr31035 3 103914412 to 103914430 18 + TSS region transcription start site region 31035
Tssr31036 3 103914560 to 103914605 45 + TSS region transcription start site region 31036
Tssr31037 3 103914613 to 103914624 11 + TSS region transcription start site region 31037
Tssr31038 3 103919626 to 103919630 4 + TSS region transcription start site region 31038
Phtf1os 3 103964536 to 103968316 3780 - antisense lncRNA gene putative homeodomain transcription factor 1, opposite strand
Cpgi13642 3 103967921 to 103968959 1038 CpG island CpG island 13642
Tssr31039 3 103967945 to 103967972 27 + TSS region transcription start site region 31039
Phtf1 3 103968110 to 104007490 39380 + protein coding gene putative homeodomain transcription factor 1
Tssr34872 3 103968278 to 103968321 43 - TSS region transcription start site region 34872
Tssr31040 3 103968327 to 103968394 67 + TSS region transcription start site region 31040
Tssr31041 3 103968629 to 103968661 32 + TSS region transcription start site region 31041
Tssr31042 3 103988337 to 103988386 49 + TSS region transcription start site region 31042
Magi3 3 104013259 to 104220374 207115 - protein coding gene membrane associated guanylate kinase, WW and PDZ domain containing 3
Gm42696 3 104057000 to 104058141 1141 - sense intronic lncRNA gene predicted gene 42696
9530097N15Rik 3 104078435 to 104079502 1067 - sense intronic lncRNA gene RIKEN cDNA 9530097N15 gene
Tssr34873 3 104089533 to 104089563 30 - TSS region transcription start site region 34873
Gm23830 3 104092381 to 104092482 101 + snRNA gene predicted gene, 23830
Gm42700 3 104095444 to 104097880 2436 - sense intronic lncRNA gene predicted gene 42700
Gm42699 3 104114039 to 104115695 1656 - sense intronic lncRNA gene predicted gene 42699
Gm17956 3 104129447 to 104130253 806 + pseudogene predicted gene, 17956
Gm42702 3 104135785 to 104140001 4216 - sense intronic lncRNA gene predicted gene 42702
Gm42701 3 104144199 to 104145855 1656 - sense intronic lncRNA gene predicted gene 42701
Gm43258 3 104149756 to 104151705 1949 - sense intronic lncRNA gene predicted gene 43258
C030032O16Rik 3 104155533 to 104156248 715 - sense intronic lncRNA gene RIKEN cDNA C030032O16 gene
Gm43259 3 104163924 to 104167200 3276 - sense intronic lncRNA gene predicted gene 43259
Tssr34874 3 104171471 to 104171473 2 - TSS region transcription start site region 34874
Tssr34875 3 104174614 to 104174619 5 - TSS region transcription start site region 34875
Gm43260 3 104180612 to 104183041 2429 - sense intronic lncRNA gene predicted gene 43260
Gm43256 3 104187103 to 104190193 3090 - sense intronic lncRNA gene predicted gene 43256
D3Wsu167e 3 104193194 to 104193442 248 DNA segment DNA segment, Chr 3, Wayne State University 167, expressed
Gm23077 3 104201110 to 104201225 115 + snoRNA gene predicted gene, 23077
Cpgi13643 3 104219226 to 104221004 1778 CpG island CpG island 13643
Tssr34876 3 104220346 to 104220357 11 - TSS region transcription start site region 34876
Tssr34877 3 104220360 to 104220378 18 - TSS region transcription start site region 34877
Tssr31043 3 104220871 to 104220888 17 + TSS region transcription start site region 31043
2010002M09Rik 3 104220882 to 104222080 1198 unclassified gene RIKEN cDNA 2010002M09 gene
Twq3 3 104320699 to 104320699 0 QTL testis weight QTL 3
Gm5546 3 104351783 to 104360318 8535 - lincRNA gene predicted gene 5546
Gm38412 3 104409161 to 104417535 8374 + antisense lncRNA gene predicted gene, 38412
Gm9273 3 104417613 to 104418327 714 - pseudogene predicted gene 9273
Lrig2 3 104453980 to 104511918 57938 - protein coding gene leucine-rich repeats and immunoglobulin-like domains 2
Tssr34878 3 104454586 to 104454590 4 - TSS region transcription start site region 34878
Tssr31044 3 104456623 to 104456625 2 + TSS region transcription start site region 31044
Gm43696 3 104470660 to 104476730 6070 - sense intronic lncRNA gene predicted gene 43696
Tssr34879 3 104476704 to 104476707 3 - TSS region transcription start site region 34879
Tssr994 3 104478802 to 104478823 21 + TSS region transcription start site region 994
A530041M06Rik 3 104499320 to 104501607 2287 - sense intronic lncRNA gene RIKEN cDNA A530041M06 gene
4930509H03Rik 3 104510099 to 104511313 1214 - sense intronic lncRNA gene RIKEN cDNA 4930509H03 gene
Cpgi13644 3 104511255 to 104512434 1179 CpG island CpG island 13644
Tssr995 3 104511749 to 104511758 9 - TSS region transcription start site region 995
Tssr34880 3 104511812 to 104511933 121 - TSS region transcription start site region 34880
Tssr34881 3 104523684 to 104523700 16 - TSS region transcription start site region 34881
Tssr34882 3 104523770 to 104523789 19 - TSS region transcription start site region 34882
Gm34490 3 104555386 to 104571857 16471 + lncRNA gene predicted gene, 34490
D3Ertd711e 3 104571622 to 104571843 221 DNA segment DNA segment, Chr 3, ERATO Doi 711, expressed
Gm26091 3 104601158 to 104601239 81 - snRNA gene predicted gene, 26091
Gm43582 3 104634315 to 104634657 342 - pseudogene predicted gene 43582
Tssr34883 3 104637557 to 104637561 4 - TSS region transcription start site region 34883
Cpgi13645 3 104637961 to 104639592 1631 CpG island CpG island 13645
Tssr34884 3 104638429 to 104638442 13 - TSS region transcription start site region 34884
Tssr34885 3 104638532 to 104638542 10 - TSS region transcription start site region 34885
Tssr31045 3 104638658 to 104638675 17 + TSS region transcription start site region 31045
Slc16a1 3 104638668 to 104658462 19794 + protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 1
Gm43581 3 104642994 to 104645857 2863 + sense intronic lncRNA gene predicted gene 43581
Tssr31046 3 104645032 to 104645036 4 + TSS region transcription start site region 31046
Gm43585 3 104646241 to 104647643 1402 + sense intronic lncRNA gene predicted gene 43585
Tssr31047 3 104655867 to 104655869 2 + TSS region transcription start site region 31047
Tssr31048 3 104657090 to 104657094 4 + TSS region transcription start site region 31048
Gm29561 3 104661343 to 104664139 2796 - lincRNA gene predicted gene 29561
Gm29560 3 104667032 to 104670010 2978 - protein coding gene predicted gene 29560
Cpgi13646 3 104675349 to 104675681 332 CpG island CpG island 13646
Gm34548 3 104677551 to 104680628 3077 - lncRNA gene predicted gene, 34548
Gm24223 3 104700870 to 104700959 89 + snRNA gene predicted gene, 24223
Cpgi13647 3 104700981 to 104701263 282 CpG island CpG island 13647
Gm29572 3 104706585 to 104710910 4325 + protein coding gene predicted gene 29572
Gm6485 3 104752727 to 104753165 438 - pseudogene predicted gene 6485
Gm43584 3 104753123 to 104773270 20147 - unclassified non-coding RNA gene predicted gene 43584
Cpgi13648 3 104758389 to 104758717 328 CpG island CpG island 13648
Tafa3 3 104767405 to 104779589 12184 - protein coding gene TAFA chemokine like family member 3
Tssr31049 3 104771734 to 104771742 8 + TSS region transcription start site region 31049
Tssr34886 3 104776249 to 104776251 2 - TSS region transcription start site region 34886
Tssr34887 3 104777231 to 104777235 4 - TSS region transcription start site region 34887
Cpgi13649 3 104777244 to 104777595 351 CpG island CpG island 13649
Tssr34888 3 104777483 to 104777493 10 - TSS region transcription start site region 34888
Cpgi13650 3 104780804 to 104781931 1127 CpG island CpG island 13650
Tssr31050 3 104780821 to 104780829 8 + TSS region transcription start site region 31050
Tssr34889 3 104780987 to 104781002 15 - TSS region transcription start site region 34889
Tssr31051 3 104781048 to 104781128 80 + TSS region transcription start site region 31051
Ppm1j 3 104781056 to 104786018 4962 + protein coding gene protein phosphatase 1J
Tssr31052 3 104781129 to 104781143 14 + TSS region transcription start site region 31052
Tssr31053 3 104782321 to 104782336 15 + TSS region transcription start site region 31053
Tssr31054 3 104782338 to 104782352 14 + TSS region transcription start site region 31054
Tssr31055 3 104782363 to 104782380 17 + TSS region transcription start site region 31055
Cpgi13651 3 104788544 to 104789697 1153 CpG island CpG island 13651
Tssr31056 3 104788572 to 104788595 23 + TSS region transcription start site region 31056
Tssr31057 3 104788793 to 104788841 48 + TSS region transcription start site region 31057
Tssr31058 3 104788842 to 104788855 13 + TSS region transcription start site region 31058
Tssr31059 3 104789026 to 104789046 20 + TSS region transcription start site region 31059
Rhoc 3 104789034 to 104794459 5425 + protein coding gene ras homolog family member C
Tssr34890 3 104792045 to 104792062 17 - TSS region transcription start site region 34890
Tssr31060 3 104794021 to 104794041 20 + TSS region transcription start site region 31060
Tssr31061 3 104794082 to 104794110 28 + TSS region transcription start site region 31061
Tssr31062 3 104794281 to 104794305 24 + TSS region transcription start site region 31062
Tssr34891 3 104794456 to 104794459 3 - TSS region transcription start site region 34891
Mov10 3 104794836 to 104818563 23727 - protein coding gene Moloney leukemia virus 10
Tssr31063 3 104795895 to 104795907 12 + TSS region transcription start site region 31063
Tssr34892 3 104804637 to 104804650 13 - TSS region transcription start site region 34892