Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:103868110-104107490

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptpn22 3 103859795 to 103912247 52452 + protein coding gene protein tyrosine phosphatase, non-receptor type 22 (lymphoid)
Tssr34870 3 103868145 to 103868167 22 - TSS region transcription start site region 34870
Tssr31028 3 103885939 to 103885976 37 + TSS region transcription start site region 31028
Tssr31029 3 103886237 to 103886248 11 + TSS region transcription start site region 31029
Tssr31030 3 103887260 to 103887263 3 + TSS region transcription start site region 31030
D3Mit266 3 103887450 to 103887635 185 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 266
Tssr31031 3 103901810 to 103901821 11 + TSS region transcription start site region 31031
Gm15602 3 103902499 to 103902963 464 - pseudogene predicted gene 15602
Tssr31032 3 103908035 to 103908083 48 + TSS region transcription start site region 31032
Cpgi13641 3 103913856 to 103915412 1556 CpG island CpG island 13641
Tssr31033 3 103914099 to 103914118 19 + TSS region transcription start site region 31033
Rsbn1 3 103914120 to 103966636 52516 + protein coding gene rosbin, round spermatid basic protein 1
Tssr34871 3 103914178 to 103914186 8 - TSS region transcription start site region 34871
Tssr993 3 103914242 to 103914244 2 + TSS region transcription start site region 993
Tssr31034 3 103914371 to 103914405 34 + TSS region transcription start site region 31034
Tssr31035 3 103914412 to 103914430 18 + TSS region transcription start site region 31035
Tssr31036 3 103914560 to 103914605 45 + TSS region transcription start site region 31036
Tssr31037 3 103914613 to 103914624 11 + TSS region transcription start site region 31037
Tssr31038 3 103919626 to 103919630 4 + TSS region transcription start site region 31038
Phtf1os 3 103964536 to 103968316 3780 - antisense lncRNA gene putative homeodomain transcription factor 1, opposite strand
Cpgi13642 3 103967921 to 103968959 1038 CpG island CpG island 13642
Tssr31039 3 103967945 to 103967972 27 + TSS region transcription start site region 31039
Phtf1 3 103968110 to 104007490 39380 + protein coding gene putative homeodomain transcription factor 1
Tssr34872 3 103968278 to 103968321 43 - TSS region transcription start site region 34872
Tssr31040 3 103968327 to 103968394 67 + TSS region transcription start site region 31040
Tssr31041 3 103968629 to 103968661 32 + TSS region transcription start site region 31041
Tssr31042 3 103988337 to 103988386 49 + TSS region transcription start site region 31042
Magi3 3 104013259 to 104220374 207115 - protein coding gene membrane associated guanylate kinase, WW and PDZ domain containing 3
Gm42696 3 104057000 to 104058141 1141 - sense intronic lncRNA gene predicted gene 42696
9530097N15Rik 3 104078435 to 104079502 1067 - sense intronic lncRNA gene RIKEN cDNA 9530097N15 gene
Tssr34873 3 104089533 to 104089563 30 - TSS region transcription start site region 34873
Gm23830 3 104092381 to 104092482 101 + snRNA gene predicted gene, 23830
Gm42700 3 104095444 to 104097880 2436 - sense intronic lncRNA gene predicted gene 42700