Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:103782346-103892463

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia5b 3 100747868 to 103837463 3089595 QTL collagen induced arthritis QTL 5b
Hipk1 3 103739815 to 103791563 51748 - protein coding gene homeodomain interacting protein kinase 1
Gm43387 3 103781914 to 103782979 1065 - sense intronic lncRNA gene predicted gene 43387
Tssr30993 3 103787479 to 103787489 10 + TSS region transcription start site region 30993
Tssr30994 3 103787490 to 103787497 7 + TSS region transcription start site region 30994
Tssr30995 3 103787527 to 103787532 5 + TSS region transcription start site region 30995
Cpgi13639 3 103790565 to 103791672 1107 CpG island CpG island 13639
Tssr30996 3 103791154 to 103791165 11 + TSS region transcription start site region 30996
Tssr34856 3 103791222 to 103791318 96 - TSS region transcription start site region 34856
Tssr34857 3 103791387 to 103791410 23 - TSS region transcription start site region 34857
Tssr34858 3 103791537 to 103791563 26 - TSS region transcription start site region 34858
Tssr34859 3 103791573 to 103791606 33 - TSS region transcription start site region 34859
Tssr34860 3 103791921 to 103791936 15 - TSS region transcription start site region 34860
Tssr34861 3 103792547 to 103792571 24 - TSS region transcription start site region 34861
Tssr34862 3 103792573 to 103792590 17 - TSS region transcription start site region 34862
Tssr34863 3 103792605 to 103792616 11 - TSS region transcription start site region 34863
Dclre1b 3 103800605 to 103809387 8782 - protein coding gene DNA cross-link repair 1B
Tssr30997 3 103803121 to 103803129 8 + TSS region transcription start site region 30997
Gm15471 3 103803129 to 103808439 5310 + lncRNA gene predicted gene 15471
Tssr30998 3 103803633 to 103803642 9 + TSS region transcription start site region 30998
Cpgi13640 3 103808866 to 103810044 1178 CpG island CpG island 13640
Tssr34864 3 103809067 to 103809079 12 - TSS region transcription start site region 34864
Tssr34865 3 103809278 to 103809409 131 - TSS region transcription start site region 34865
Ap4b1 3 103809520 to 103822025 12505 + protein coding gene adaptor-related protein complex AP-4, beta 1
Gm43064 3 103809573 to 103838648 29075 + protein coding gene predicted gene 43064
Tssr30999 3 103809575 to 103809635 60 + TSS region transcription start site region 30999
Tssr31000 3 103809648 to 103809667 19 + TSS region transcription start site region 31000
Tssr31001 3 103832562 to 103832567 5 + TSS region transcription start site region 31001
Bcl2l15 3 103832601 to 103854618 22017 + protein coding gene BCLl2-like 15
Tssr31002 3 103832695 to 103832727 32 + TSS region transcription start site region 31002
Tssr31003 3 103832741 to 103832840 99 + TSS region transcription start site region 31003
Tssr31004 3 103832848 to 103832854 6 + TSS region transcription start site region 31004
Tssr31005 3 103832866 to 103832877 11 + TSS region transcription start site region 31005
Tssr31006 3 103836068 to 103836079 11 + TSS region transcription start site region 31006
D3Mit284 3 103837346 to 103837463 117 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 284
Tssr31007 3 103846807 to 103846818 11 + TSS region transcription start site region 31007
Tssr31008 3 103846835 to 103846855 20 + TSS region transcription start site region 31008
Tssr31009 3 103846857 to 103846865 8 + TSS region transcription start site region 31009
Tssr31010 3 103846894 to 103846902 8 + TSS region transcription start site region 31010
Tssr31011 3 103851242 to 103851249 7 + TSS region transcription start site region 31011
Tssr31012 3 103851269 to 103851279 10 + TSS region transcription start site region 31012
Tssr31013 3 103851289 to 103851304 15 + TSS region transcription start site region 31013
Tssr31014 3 103851308 to 103851323 15 + TSS region transcription start site region 31014
Tssr31015 3 103851333 to 103851344 11 + TSS region transcription start site region 31015
Tssr31016 3 103853244 to 103853253 9 + TSS region transcription start site region 31016
Tssr31017 3 103857594 to 103857625 31 + TSS region transcription start site region 31017
Tssr34866 3 103858288 to 103858318 30 - TSS region transcription start site region 34866
Tssr31018 3 103859429 to 103859460 31 + TSS region transcription start site region 31018
Tssr31019 3 103859740 to 103859751 11 + TSS region transcription start site region 31019
Ptpn22 3 103859795 to 103912247 52452 + protein coding gene protein tyrosine phosphatase, non-receptor type 22 (lymphoid)
Tssr34867 3 103859897 to 103859912 15 - TSS region transcription start site region 34867
Tssr31020 3 103860020 to 103860045 25 + TSS region transcription start site region 31020
Tssr31021 3 103860265 to 103860293 28 + TSS region transcription start site region 31021
Tssr31022 3 103860294 to 103860307 13 + TSS region transcription start site region 31022
Tssr31023 3 103860312 to 103860329 17 + TSS region transcription start site region 31023
Tssr31024 3 103860346 to 103860359 13 + TSS region transcription start site region 31024
Tssr31025 3 103860378 to 103860389 11 + TSS region transcription start site region 31025
Tssr34868 3 103862634 to 103862646 12 - TSS region transcription start site region 34868
Gm15472 3 103863166 to 103864423 1257 + sense intronic lncRNA gene predicted gene 15472
Tssr31026 3 103863197 to 103863200 3 + TSS region transcription start site region 31026
Tssr31027 3 103864073 to 103864076 3 + TSS region transcription start site region 31027
Gm43065 3 103864706 to 103866797 2091 + sense intronic lncRNA gene predicted gene 43065
Tssr34869 3 103868090 to 103868099 9 - TSS region transcription start site region 34869
Tssr34870 3 103868145 to 103868167 22 - TSS region transcription start site region 34870
Tssr31028 3 103885939 to 103885976 37 + TSS region transcription start site region 31028
Tssr31029 3 103886237 to 103886248 11 + TSS region transcription start site region 31029
Tssr31030 3 103887260 to 103887263 3 + TSS region transcription start site region 31030
D3Mit266 3 103887450 to 103887635 185 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 266