Gene symbol |
Chromo- some |
Coordinates (bp, mm10) |
Size (bp) |
Strand |
Feature Type |
Gene name |
---|---|---|---|---|---|---|
Cia5b | 3 | 3089595 | QTL | collagen induced arthritis QTL 5b | ||
Syt6 | 3 | 70325 | + | protein coding gene | synaptotagmin VI | |
Gm43066 | 3 | 1259 | + | sense intronic lncRNA gene | predicted gene 43066 | |
Atg4a-ps | 3 | 2114 | - | pseudogene | autophagy related 4A, pseudogene | |
Tssr34843 | 3 | 9 | - | TSS region | transcription start site region 34843 | |
Gm25325 | 3 | 85 | - | miRNA gene | predicted gene, 25325 | |
Gm15986 | 3 | 399 | + | pseudogene | predicted gene 15986 | |
Olfml3 | 3 | 2607 | - | protein coding gene | olfactomedin-like 3 | |
Tssr34844 | 3 | 11 | - | TSS region | transcription start site region 34844 | |
Tssr34845 | 3 | 13 | - | TSS region | transcription start site region 34845 | |
Tssr30988 | 3 | 16 | + | TSS region | transcription start site region 30988 | |
Tssr34846 | 3 | 36 | - | TSS region | transcription start site region 34846 | |
Tssr34847 | 3 | 11 | - | TSS region | transcription start site region 34847 | |
Gm10964 | 3 | 7010 | + | protein coding gene | predicted gene 10964 | |
Hipk1 | 3 | 51748 | - | protein coding gene | homeodomain interacting protein kinase 1 | |
Tssr34848 | 3 | 4 | - | TSS region | transcription start site region 34848 | |
Tssr34849 | 3 | 15 | - | TSS region | transcription start site region 34849 | |
Gm43149 | 3 | 1421 | - | sense intronic lncRNA gene | predicted gene 43149 | |
Gm15886 | 3 | 6513 | + | antisense lncRNA gene | predicted gene 15886 | |
Tssr30989 | 3 | 8 | + | TSS region | transcription start site region 30989 | |
Tssr30990 | 3 | 12 | + | TSS region | transcription start site region 30990 | |
Tssr30991 | 3 | 12 | + | TSS region | transcription start site region 30991 | |
Tssr30992 | 3 | 11 | + | TSS region | transcription start site region 30992 | |
Tssr34850 | 3 | 2 | - | TSS region | transcription start site region 34850 | |
Tssr34851 | 3 | 16 | - | TSS region | transcription start site region 34851 | |
Tssr34852 | 3 | 21 | - | TSS region | transcription start site region 34852 | |
Tssr34853 | 3 | 13 | - | TSS region | transcription start site region 34853 | |
Tssr34854 | 3 | 20 | - | TSS region | transcription start site region 34854 | |
Tssr34855 | 3 | 17 | - | TSS region | transcription start site region 34855 | |
Gm43387 | 3 | 1065 | - | sense intronic lncRNA gene | predicted gene 43387 | |
Tssr30993 | 3 | 10 | + | TSS region | transcription start site region 30993 | |
Tssr30994 | 3 | 7 | + | TSS region | transcription start site region 30994 | |
Tssr30995 | 3 | 5 | + | TSS region | transcription start site region 30995 | |
Cpgi13639 | 3 | 1107 | CpG island | CpG island 13639 | ||
Tssr30996 | 3 | 11 | + | TSS region | transcription start site region 30996 | |
Tssr34856 | 3 | 96 | - | TSS region | transcription start site region 34856 | |
Tssr34857 | 3 | 23 | - | TSS region | transcription start site region 34857 | |
Tssr34858 | 3 | 26 | - | TSS region | transcription start site region 34858 | |
Tssr34859 | 3 | 33 | - | TSS region | transcription start site region 34859 | |
Tssr34860 | 3 | 15 | - | TSS region | transcription start site region 34860 | |
Tssr34861 | 3 | 24 | - | TSS region | transcription start site region 34861 | |
Tssr34862 | 3 | 17 | - | TSS region | transcription start site region 34862 | |
Tssr34863 | 3 | 11 | - | TSS region | transcription start site region 34863 | |
Dclre1b | 3 | 8782 | - | protein coding gene | DNA cross-link repair 1B | |
Tssr30997 | 3 | 8 | + | TSS region | transcription start site region 30997 | |
Gm15471 | 3 | 5310 | + | lncRNA gene | predicted gene 15471 | |
Tssr30998 | 3 | 9 | + | TSS region | transcription start site region 30998 | |
Cpgi13640 | 3 | 1178 | CpG island | CpG island 13640 | ||
Tssr34864 | 3 | 12 | - | TSS region | transcription start site region 34864 | |
Tssr34865 | 3 | 131 | - | TSS region | transcription start site region 34865 | |
Ap4b1 | 3 | 12505 | + | protein coding gene | adaptor-related protein complex AP-4, beta 1 | |
Gm43064 | 3 | 29075 | + | protein coding gene | predicted gene 43064 | |
Tssr30999 | 3 | 60 | + | TSS region | transcription start site region 30999 | |
Tssr31000 | 3 | 19 | + | TSS region | transcription start site region 31000 | |
Tssr31001 | 3 | 5 | + | TSS region | transcription start site region 31001 | |
Bcl2l15 | 3 | 22017 | + | protein coding gene | BCLl2-like 15 | |
Tssr31002 | 3 | 32 | + | TSS region | transcription start site region 31002 | |
Tssr31003 | 3 | 99 | + | TSS region | transcription start site region 31003 | |
Tssr31004 | 3 | 6 | + | TSS region | transcription start site region 31004 | |
Tssr31005 | 3 | 11 | + | TSS region | transcription start site region 31005 | |
Tssr31006 | 3 | 11 | + | TSS region | transcription start site region 31006 | |
D3Mit284 | 3 | 117 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 284 | ||
Tssr31007 | 3 | 11 | + | TSS region | transcription start site region 31007 | |
Tssr31008 | 3 | 20 | + | TSS region | transcription start site region 31008 | |
Tssr31009 | 3 | 8 | + | TSS region | transcription start site region 31009 | |
Tssr31010 | 3 | 8 | + | TSS region | transcription start site region 31010 | |
Tssr31011 | 3 | 7 | + | TSS region | transcription start site region 31011 | |
Tssr31012 | 3 | 10 | + | TSS region | transcription start site region 31012 | |
Tssr31013 | 3 | 15 | + | TSS region | transcription start site region 31013 | |
Tssr31014 | 3 | 15 | + | TSS region | transcription start site region 31014 | |
Tssr31015 | 3 | 11 | + | TSS region | transcription start site region 31015 | |
Tssr31016 | 3 | 9 | + | TSS region | transcription start site region 31016 | |
Tssr31017 | 3 | 31 | + | TSS region | transcription start site region 31017 | |
Tssr34866 | 3 | 30 | - | TSS region | transcription start site region 34866 | |
Tssr31018 | 3 | 31 | + | TSS region | transcription start site region 31018 | |
Tssr31019 | 3 | 11 | + | TSS region | transcription start site region 31019 | |
Ptpn22 | 3 | 52452 | + | protein coding gene | protein tyrosine phosphatase, non-receptor type 22 (lymphoid) | |
Tssr34867 | 3 | 15 | - | TSS region | transcription start site region 34867 | |
Tssr31020 | 3 | 25 | + | TSS region | transcription start site region 31020 | |
Tssr31021 | 3 | 28 | + | TSS region | transcription start site region 31021 | |
Tssr31022 | 3 | 13 | + | TSS region | transcription start site region 31022 | |
Tssr31023 | 3 | 17 | + | TSS region | transcription start site region 31023 | |
Tssr31024 | 3 | 13 | + | TSS region | transcription start site region 31024 | |
Tssr31025 | 3 | 11 | + | TSS region | transcription start site region 31025 | |
Tssr34868 | 3 | 12 | - | TSS region | transcription start site region 34868 | |
Gm15472 | 3 | 1257 | + | sense intronic lncRNA gene | predicted gene 15472 | |
Tssr31026 | 3 | 3 | + | TSS region | transcription start site region 31026 | |
Tssr31027 | 3 | 3 | + | TSS region | transcription start site region 31027 | |
Gm43065 | 3 | 2091 | + | sense intronic lncRNA gene | predicted gene 43065 | |
Tssr34869 | 3 | 9 | - | TSS region | transcription start site region 34869 | |
Tssr34870 | 3 | 22 | - | TSS region | transcription start site region 34870 | |
Tssr31028 | 3 | 37 | + | TSS region | transcription start site region 31028 | |
Tssr31029 | 3 | 11 | + | TSS region | transcription start site region 31029 | |
Tssr31030 | 3 | 3 | + | TSS region | transcription start site region 31030 | |
D3Mit266 | 3 | 185 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 266 | ||
Tssr31031 | 3 | 11 | + | TSS region | transcription start site region 31031 | |
Gm15602 | 3 | 464 | - | pseudogene | predicted gene 15602 | |
Tssr31032 | 3 | 48 | + | TSS region | transcription start site region 31032 | |
Cpgi13641 | 3 | 1556 | CpG island | CpG island 13641 | ||
Tssr31033 | 3 | 19 | + | TSS region | transcription start site region 31033 | |
Rsbn1 | 3 | 52516 | + | protein coding gene | rosbin, round spermatid basic protein 1 | |
Tssr34871 | 3 | 8 | - | TSS region | transcription start site region 34871 | |
Tssr993 | 3 | 2 | + | TSS region | transcription start site region 993 | |
Tssr31034 | 3 | 34 | + | TSS region | transcription start site region 31034 | |
Tssr31035 | 3 | 18 | + | TSS region | transcription start site region 31035 | |
Tssr31036 | 3 | 45 | + | TSS region | transcription start site region 31036 | |
Tssr31037 | 3 | 11 | + | TSS region | transcription start site region 31037 | |
Tssr31038 | 3 | 4 | + | TSS region | transcription start site region 31038 | |
Phtf1os | 3 | 3780 | - | antisense lncRNA gene | putative homeodomain transcription factor 1, opposite strand | |
Cpgi13642 | 3 | 1038 | CpG island | CpG island 13642 | ||
Tssr31039 | 3 | 27 | + | TSS region | transcription start site region 31039 | |
Phtf1 | 3 | 39380 | + | protein coding gene | putative homeodomain transcription factor 1 | |
Tssr34872 | 3 | 43 | - | TSS region | transcription start site region 34872 | |
Tssr31040 | 3 | 67 | + | TSS region | transcription start site region 31040 | |
Tssr31041 | 3 | 32 | + | TSS region | transcription start site region 31041 | |
Tssr31042 | 3 | 49 | + | TSS region | transcription start site region 31042 | |
Magi3 | 3 | 207115 | - | protein coding gene | membrane associated guanylate kinase, WW and PDZ domain containing 3 | |
Gm42696 | 3 | 1141 | - | sense intronic lncRNA gene | predicted gene 42696 | |
9530097N15Rik | 3 | 1067 | - | sense intronic lncRNA gene | RIKEN cDNA 9530097N15 gene | |
Tssr34873 | 3 | 30 | - | TSS region | transcription start site region 34873 | |
Gm23830 | 3 | 101 | + | snRNA gene | predicted gene, 23830 | |
Gm42700 | 3 | 2436 | - | sense intronic lncRNA gene | predicted gene 42700 | |
Gm42699 | 3 | 1656 | - | sense intronic lncRNA gene | predicted gene 42699 | |
Gm17956 | 3 | 806 | + | pseudogene | predicted gene, 17956 | |
Gm42702 | 3 | 4216 | - | sense intronic lncRNA gene | predicted gene 42702 | |
Gm42701 | 3 | 1656 | - | sense intronic lncRNA gene | predicted gene 42701 | |
Gm43258 | 3 | 1949 | - | sense intronic lncRNA gene | predicted gene 43258 | |
C030032O16Rik | 3 | 715 | - | sense intronic lncRNA gene | RIKEN cDNA C030032O16 gene | |
Gm43259 | 3 | 3276 | - | sense intronic lncRNA gene | predicted gene 43259 | |
Tssr34874 | 3 | 2 | - | TSS region | transcription start site region 34874 | |
Tssr34875 | 3 | 5 | - | TSS region | transcription start site region 34875 | |
Gm43260 | 3 | 2429 | - | sense intronic lncRNA gene | predicted gene 43260 | |
Gm43256 | 3 | 3090 | - | sense intronic lncRNA gene | predicted gene 43256 | |
D3Wsu167e | 3 | 248 | DNA segment | DNA segment, Chr 3, Wayne State University 167, expressed | ||
Gm23077 | 3 | 115 | + | snoRNA gene | predicted gene, 23077 | |
Cpgi13643 | 3 | 1778 | CpG island | CpG island 13643 | ||
Tssr34876 | 3 | 11 | - | TSS region | transcription start site region 34876 | |
Tssr34877 | 3 | 18 | - | TSS region | transcription start site region 34877 | |
Tssr31043 | 3 | 17 | + | TSS region | transcription start site region 31043 | |
2010002M09Rik | 3 | 1198 | unclassified gene | RIKEN cDNA 2010002M09 gene | ||
Twq3 | 3 | 0 | QTL | testis weight QTL 3 | ||
Gm5546 | 3 | 8535 | - | lincRNA gene | predicted gene 5546 | |
Gm38412 | 3 | 8374 | + | antisense lncRNA gene | predicted gene, 38412 | |
Gm9273 | 3 | 714 | - | pseudogene | predicted gene 9273 | |
Lrig2 | 3 | 57938 | - | protein coding gene | leucine-rich repeats and immunoglobulin-like domains 2 | |
Tssr34878 | 3 | 4 | - | TSS region | transcription start site region 34878 | |
Tssr31044 | 3 | 2 | + | TSS region | transcription start site region 31044 | |
Gm43696 | 3 | 6070 | - | sense intronic lncRNA gene | predicted gene 43696 | |
Tssr34879 | 3 | 3 | - | TSS region | transcription start site region 34879 | |
Tssr994 | 3 | 21 | + | TSS region | transcription start site region 994 | |
A530041M06Rik | 3 | 2287 | - | sense intronic lncRNA gene | RIKEN cDNA A530041M06 gene | |
4930509H03Rik | 3 | 1214 | - | sense intronic lncRNA gene | RIKEN cDNA 4930509H03 gene | |
Cpgi13644 | 3 | 1179 | CpG island | CpG island 13644 | ||
Tssr995 | 3 | 9 | - | TSS region | transcription start site region 995 | |
Tssr34880 | 3 | 121 | - | TSS region | transcription start site region 34880 | |
Tssr34881 | 3 | 16 | - | TSS region | transcription start site region 34881 | |
Tssr34882 | 3 | 19 | - | TSS region | transcription start site region 34882 | |
Gm34490 | 3 | 16471 | + | lncRNA gene | predicted gene, 34490 | |
D3Ertd711e | 3 | 221 | DNA segment | DNA segment, Chr 3, ERATO Doi 711, expressed | ||
Gm26091 | 3 | 81 | - | snRNA gene | predicted gene, 26091 | |
Gm43582 | 3 | 342 | - | pseudogene | predicted gene 43582 | |
Tssr34883 | 3 | 4 | - | TSS region | transcription start site region 34883 | |
Cpgi13645 | 3 | 1631 | CpG island | CpG island 13645 | ||
Tssr34884 | 3 | 13 | - | TSS region | transcription start site region 34884 | |
Tssr34885 | 3 | 10 | - | TSS region | transcription start site region 34885 | |
Tssr31045 | 3 | 17 | + | TSS region | transcription start site region 31045 | |
Slc16a1 | 3 | 19794 | + | protein coding gene | solute carrier family 16 (monocarboxylic acid transporters), member 1 | |
Gm43581 | 3 | 2863 | + | sense intronic lncRNA gene | predicted gene 43581 | |
Tssr31046 | 3 | 4 | + | TSS region | transcription start site region 31046 | |
Gm43585 | 3 | 1402 | + | sense intronic lncRNA gene | predicted gene 43585 | |
Tssr31047 | 3 | 2 | + | TSS region | transcription start site region 31047 | |
Tssr31048 | 3 | 4 | + | TSS region | transcription start site region 31048 | |
Gm29561 | 3 | 2796 | - | lincRNA gene | predicted gene 29561 | |
Gm29560 | 3 | 2978 | - | protein coding gene | predicted gene 29560 | |
Cpgi13646 | 3 | 332 | CpG island | CpG island 13646 | ||
Gm34548 | 3 | 3077 | - | lncRNA gene | predicted gene, 34548 | |
Gm24223 | 3 | 89 | + | snRNA gene | predicted gene, 24223 | |
Cpgi13647 | 3 | 282 | CpG island | CpG island 13647 | ||
Gm29572 | 3 | 4325 | + | protein coding gene | predicted gene 29572 | |
Gm6485 | 3 | 438 | - | pseudogene | predicted gene 6485 | |
Gm43584 | 3 | 20147 | - | unclassified non-coding RNA gene | predicted gene 43584 | |
Cpgi13648 | 3 | 328 | CpG island | CpG island 13648 | ||
Tafa3 | 3 | 12184 | - | protein coding gene | TAFA chemokine like family member 3 | |
Tssr31049 | 3 | 8 | + | TSS region | transcription start site region 31049 | |
Tssr34886 | 3 | 2 | - | TSS region | transcription start site region 34886 | |
Tssr34887 | 3 | 4 | - | TSS region | transcription start site region 34887 | |
Cpgi13649 | 3 | 351 | CpG island | CpG island 13649 | ||
Tssr34888 | 3 | 10 | - | TSS region | transcription start site region 34888 | |
Cpgi13650 | 3 | 1127 | CpG island | CpG island 13650 | ||
Tssr31050 | 3 | 8 | + | TSS region | transcription start site region 31050 | |
Tssr34889 | 3 | 15 | - | TSS region | transcription start site region 34889 | |
Tssr31051 | 3 | 80 | + | TSS region | transcription start site region 31051 | |
Ppm1j | 3 | 4962 | + | protein coding gene | protein phosphatase 1J | |
Tssr31052 | 3 | 14 | + | TSS region | transcription start site region 31052 | |
Tssr31053 | 3 | 15 | + | TSS region | transcription start site region 31053 | |
Tssr31054 | 3 | 14 | + | TSS region | transcription start site region 31054 | |
Tssr31055 | 3 | 17 | + | TSS region | transcription start site region 31055 | |
Cpgi13651 | 3 | 1153 | CpG island | CpG island 13651 | ||
Tssr31056 | 3 | 23 | + | TSS region | transcription start site region 31056 | |
Tssr31057 | 3 | 48 | + | TSS region | transcription start site region 31057 |