Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:10354170-11734358

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi12983 3 10366857 to 10367247 390 CpG island CpG island 12983
Tssr28370 3 10366903 to 10366922 19 + TSS region transcription start site region 28370
Tssr28371 3 10366927 to 10366963 36 + TSS region transcription start site region 28371
Tssr28372 3 10366967 to 10366987 20 + TSS region transcription start site region 28372
Chmp4c 3 10366973 to 10391005 24032 + protein coding gene charged multivesicular body protein 4C
Tssr28373 3 10366992 to 10367001 9 + TSS region transcription start site region 28373
Tssr28374 3 10367009 to 10367026 17 + TSS region transcription start site region 28374
Snx16 3 10417817 to 10440102 22285 - protein coding gene sorting nexin 16
5430403G19Rik 3 10426593 to 10428865 2272 unclassified non-coding RNA gene RIKEN cDNA 5430403G19 gene
A630040H13Rik 3 10430763 to 10434206 3443 unclassified gene RIKEN cDNA A630040H13 gene
Cpgi12984 3 10439393 to 10440235 842 CpG island CpG island 12984
Tssr32622 3 10439960 to 10439977 17 - TSS region transcription start site region 32622
Tssr32623 3 10439995 to 10440006 11 - TSS region transcription start site region 32623
Tssr32624 3 10440008 to 10440022 14 - TSS region transcription start site region 32624
Tssr32625 3 10440054 to 10440127 73 - TSS region transcription start site region 32625
D3Mit265 3 10636379 to 10636517 138 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 265
Gm37831 3 10646316 to 10648102 1786 + unclassified gene predicted gene, 37831
Gm18692 3 10753918 to 10754428 510 - pseudogene predicted gene, 18692
Tssr28375 3 10760335 to 10760380 45 + TSS region transcription start site region 28375
Gm37244 3 10772919 to 10774899 1980 - unclassified gene predicted gene, 37244
Gm33551 3 10848895 to 10857537 8642 + lncRNA gene predicted gene, 33551
Tssr32626 3 10971968 to 10971973 5 - TSS region transcription start site region 32626
Gm22795 3 10975469 to 10975586 117 - snoRNA gene predicted gene, 22795
Gm21631 3 11008850 to 11009603 753 - pseudogene predicted gene, 21631
Gm8910 3 11013514 to 11015199 1685 - pseudogene predicted gene 8910
Tssr32627 3 11015192 to 11015193 1 - TSS region transcription start site region 32627
Gm37832 3 11044170 to 11044358 188 - pseudogene predicted gene, 37832
Gm22547 3 11154337 to 11154437 100 + miRNA gene predicted gene, 22547
Tssr32628 3 11211244 to 11211253 9 - TSS region transcription start site region 32628
Tssr32629 3 11214202 to 11214211 9 - TSS region transcription start site region 32629
Gm8919 3 11658497 to 11659510 1013 - pseudogene predicted gene 8919