Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:103420242-103800567

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm25869 3 103427437 to 103427543 106 + snRNA gene predicted gene, 25869
Gm25199 3 103445697 to 103445800 103 - snRNA gene predicted gene, 25199
Tssr30984 3 103484713 to 103484755 42 + TSS region transcription start site region 30984
D3Mit192 3 103488927 to 103489122 195 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 192
Gm34049 3 103501465 to 103551366 49901 + lncRNA gene predicted gene, 34049
Cpgi13638 3 103575128 to 103576755 1627 CpG island CpG island 13638
Tssr30985 3 103575238 to 103575255 17 + TSS region transcription start site region 30985
Syt6 3 103575242 to 103645567 70325 + protein coding gene synaptotagmin VI
Tssr30986 3 103575275 to 103575286 11 + TSS region transcription start site region 30986
Tssr30987 3 103576133 to 103576147 14 + TSS region transcription start site region 30987
Gm43066 3 103601943 to 103603202 1259 + sense intronic lncRNA gene predicted gene 43066
Atg4a-ps 3 103643954 to 103646068 2114 - pseudogene autophagy related 4A, pseudogene
Tssr34843 3 103646031 to 103646040 9 - TSS region transcription start site region 34843
Gm25325 3 103666542 to 103666627 85 - miRNA gene predicted gene, 25325
Gm15986 3 103694798 to 103695197 399 + pseudogene predicted gene 15986
Olfml3 3 103735394 to 103738001 2607 - protein coding gene olfactomedin-like 3
Tssr34844 3 103735713 to 103735724 11 - TSS region transcription start site region 34844
Tssr34845 3 103735741 to 103735754 13 - TSS region transcription start site region 34845
Tssr30988 3 103735853 to 103735869 16 + TSS region transcription start site region 30988
Tssr34846 3 103737938 to 103737974 36 - TSS region transcription start site region 34846
Tssr34847 3 103737995 to 103738006 11 - TSS region transcription start site region 34847
Gm10964 3 103739366 to 103746376 7010 + protein coding gene predicted gene 10964
Hipk1 3 103739815 to 103791563 51748 - protein coding gene homeodomain interacting protein kinase 1
Tssr34848 3 103741940 to 103741944 4 - TSS region transcription start site region 34848
Tssr34849 3 103749431 to 103749446 15 - TSS region transcription start site region 34849
Gm43149 3 103765695 to 103767116 1421 - sense intronic lncRNA gene predicted gene 43149
Gm15886 3 103770702 to 103777215 6513 + antisense lncRNA gene predicted gene 15886
Tssr30989 3 103771910 to 103771918 8 + TSS region transcription start site region 30989
Tssr30990 3 103771926 to 103771938 12 + TSS region transcription start site region 30990
Tssr30991 3 103774171 to 103774183 12 + TSS region transcription start site region 30991
Tssr30992 3 103774186 to 103774197 11 + TSS region transcription start site region 30992
Tssr34850 3 103776809 to 103776811 2 - TSS region transcription start site region 34850
Tssr34851 3 103778135 to 103778151 16 - TSS region transcription start site region 34851
Tssr34852 3 103778156 to 103778177 21 - TSS region transcription start site region 34852
Tssr34853 3 103778188 to 103778201 13 - TSS region transcription start site region 34853
Tssr34854 3 103778257 to 103778277 20 - TSS region transcription start site region 34854
Tssr34855 3 103778309 to 103778326 17 - TSS region transcription start site region 34855
Gm43387 3 103781914 to 103782979 1065 - sense intronic lncRNA gene predicted gene 43387
Tssr30993 3 103787479 to 103787489 10 + TSS region transcription start site region 30993
Tssr30994 3 103787490 to 103787497 7 + TSS region transcription start site region 30994
Tssr30995 3 103787527 to 103787532 5 + TSS region transcription start site region 30995
Cpgi13639 3 103790565 to 103791672 1107 CpG island CpG island 13639
Tssr30996 3 103791154 to 103791165 11 + TSS region transcription start site region 30996
Tssr34856 3 103791222 to 103791318 96 - TSS region transcription start site region 34856
Tssr34857 3 103791387 to 103791410 23 - TSS region transcription start site region 34857
Tssr34858 3 103791537 to 103791563 26 - TSS region transcription start site region 34858
Tssr34859 3 103791573 to 103791606 33 - TSS region transcription start site region 34859
Tssr34860 3 103791921 to 103791936 15 - TSS region transcription start site region 34860
Tssr34861 3 103792547 to 103792571 24 - TSS region transcription start site region 34861
Tssr34862 3 103792573 to 103792590 17 - TSS region transcription start site region 34862
Tssr34863 3 103792605 to 103792616 11 - TSS region transcription start site region 34863