Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:103173927-103804122

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bcas2 3 103171660 to 103179163 7503 + protein coding gene breast carcinoma amplified sequence 2
Gm27024 3 103179689 to 103180443 754 - pseudogene predicted gene, 27024
Cpgi13635 3 103182931 to 103183143 212 CpG island CpG island 13635
Gm40113 3 103189293 to 103196724 7431 - lncRNA gene predicted gene, 40113
2410024N13Rik 3 103198226 to 103198975 749 - pseudogene RIKEN cDNA 2410024N13 gene
Gm43060 3 103246975 to 103247263 288 - pseudogene predicted gene 43060
Tssr30971 3 103263060 to 103263067 7 + TSS region transcription start site region 30971
Cpgi13636 3 103279194 to 103280718 1524 CpG island CpG island 13636
Trim33 3 103279293 to 103358770 79477 + protein coding gene tripartite motif-containing 33
Tssr30972 3 103279714 to 103279780 66 + TSS region transcription start site region 30972
Tssr30973 3 103279781 to 103279799 18 + TSS region transcription start site region 30973
Tssr30974 3 103279849 to 103279873 24 + TSS region transcription start site region 30974
D3Wsu106e 3 103296015 to 103296264 249 DNA segment DNA segment, Chr 3, Wayne State University 106, expressed
Tssr30975 3 103309761 to 103309767 6 + TSS region transcription start site region 30975
Tssr30976 3 103321898 to 103321903 5 + TSS region transcription start site region 30976
Tssr30977 3 103325414 to 103325420 6 + TSS region transcription start site region 30977
Tssr30978 3 103329105 to 103329131 26 + TSS region transcription start site region 30978
Gm43061 3 103332143 to 103334383 2240 + sense intronic lncRNA gene predicted gene 43061
Tssr30979 3 103356809 to 103356816 7 + TSS region transcription start site region 30979
Tssr34840 3 103364239 to 103364266 27 - TSS region transcription start site region 34840
Tssr30980 3 103373764 to 103373765 1 + TSS region transcription start site region 30980
Cpgi13637 3 103383230 to 103383500 270 CpG island CpG island 13637
Tssr34841 3 103384979 to 103384984 5 - TSS region transcription start site region 34841
Tssr30981 3 103385174 to 103385191 17 + TSS region transcription start site region 30981
Tssr30982 3 103386879 to 103386891 12 + TSS region transcription start site region 30982
Tssr30983 3 103386983 to 103387004 21 + TSS region transcription start site region 30983
Gm25009 3 103392933 to 103393034 101 + snoRNA gene predicted gene, 25009
Tssr34842 3 103414617 to 103414619 2 - TSS region transcription start site region 34842
Gm25869 3 103427437 to 103427543 106 + snRNA gene predicted gene, 25869
Gm25199 3 103445697 to 103445800 103 - snRNA gene predicted gene, 25199
Tssr30984 3 103484713 to 103484755 42 + TSS region transcription start site region 30984
D3Mit192 3 103488927 to 103489122 195 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 192
Gm34049 3 103501465 to 103551366 49901 + lncRNA gene predicted gene, 34049
Cpgi13638 3 103575128 to 103576755 1627 CpG island CpG island 13638
Tssr30985 3 103575238 to 103575255 17 + TSS region transcription start site region 30985
Syt6 3 103575242 to 103645567 70325 + protein coding gene synaptotagmin VI
Tssr30986 3 103575275 to 103575286 11 + TSS region transcription start site region 30986
Tssr30987 3 103576133 to 103576147 14 + TSS region transcription start site region 30987
Gm43066 3 103601943 to 103603202 1259 + sense intronic lncRNA gene predicted gene 43066
Atg4a-ps 3 103643954 to 103646068 2114 - pseudogene autophagy related 4A, pseudogene
Tssr34843 3 103646031 to 103646040 9 - TSS region transcription start site region 34843
Gm25325 3 103666542 to 103666627 85 - miRNA gene predicted gene, 25325
Gm15986 3 103694798 to 103695197 399 + pseudogene predicted gene 15986
Olfml3 3 103735394 to 103738001 2607 - protein coding gene olfactomedin-like 3
Tssr34844 3 103735713 to 103735724 11 - TSS region transcription start site region 34844
Tssr34845 3 103735741 to 103735754 13 - TSS region transcription start site region 34845
Tssr30988 3 103735853 to 103735869 16 + TSS region transcription start site region 30988
Tssr34846 3 103737938 to 103737974 36 - TSS region transcription start site region 34846
Tssr34847 3 103737995 to 103738006 11 - TSS region transcription start site region 34847
Gm10964 3 103739366 to 103746376 7010 + protein coding gene predicted gene 10964
Hipk1 3 103739815 to 103791563 51748 - protein coding gene homeodomain interacting protein kinase 1
Tssr34848 3 103741940 to 103741944 4 - TSS region transcription start site region 34848
Tssr34849 3 103749431 to 103749446 15 - TSS region transcription start site region 34849
Gm43149 3 103765695 to 103767116 1421 - sense intronic lncRNA gene predicted gene 43149
Gm15886 3 103770702 to 103777215 6513 + antisense lncRNA gene predicted gene 15886
Tssr30989 3 103771910 to 103771918 8 + TSS region transcription start site region 30989
Tssr30990 3 103771926 to 103771938 12 + TSS region transcription start site region 30990
Tssr30991 3 103774171 to 103774183 12 + TSS region transcription start site region 30991
Tssr30992 3 103774186 to 103774197 11 + TSS region transcription start site region 30992
Tssr34850 3 103776809 to 103776811 2 - TSS region transcription start site region 34850
Tssr34851 3 103778135 to 103778151 16 - TSS region transcription start site region 34851
Tssr34852 3 103778156 to 103778177 21 - TSS region transcription start site region 34852
Tssr34853 3 103778188 to 103778201 13 - TSS region transcription start site region 34853
Tssr34854 3 103778257 to 103778277 20 - TSS region transcription start site region 34854
Tssr34855 3 103778309 to 103778326 17 - TSS region transcription start site region 34855
Gm43387 3 103781914 to 103782979 1065 - sense intronic lncRNA gene predicted gene 43387
Tssr30993 3 103787479 to 103787489 10 + TSS region transcription start site region 30993
Tssr30994 3 103787490 to 103787497 7 + TSS region transcription start site region 30994
Tssr30995 3 103787527 to 103787532 5 + TSS region transcription start site region 30995
Cpgi13639 3 103790565 to 103791672 1107 CpG island CpG island 13639
Tssr30996 3 103791154 to 103791165 11 + TSS region transcription start site region 30996
Tssr34856 3 103791222 to 103791318 96 - TSS region transcription start site region 34856
Tssr34857 3 103791387 to 103791410 23 - TSS region transcription start site region 34857
Tssr34858 3 103791537 to 103791563 26 - TSS region transcription start site region 34858
Tssr34859 3 103791573 to 103791606 33 - TSS region transcription start site region 34859
Tssr34860 3 103791921 to 103791936 15 - TSS region transcription start site region 34860
Tssr34861 3 103792547 to 103792571 24 - TSS region transcription start site region 34861
Tssr34862 3 103792573 to 103792590 17 - TSS region transcription start site region 34862
Tssr34863 3 103792605 to 103792616 11 - TSS region transcription start site region 34863
Dclre1b 3 103800605 to 103809387 8782 - protein coding gene DNA cross-link repair 1B
Tssr30997 3 103803121 to 103803129 8 + TSS region transcription start site region 30997
Gm15471 3 103803129 to 103808439 5310 + lncRNA gene predicted gene 15471
Tssr30998 3 103803633 to 103803642 9 + TSS region transcription start site region 30998