Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:103046983-103727004

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Csde1 3 103020431 to 103058186 37755 + protein coding gene cold shock domain containing E1, RNA binding
Tssr30954 3 103049655 to 103049667 12 + TSS region transcription start site region 30954
Tssr30955 3 103056974 to 103057007 33 + TSS region transcription start site region 30955
Cpgi13631 3 103058234 to 103058662 428 CpG island CpG island 13631
Nras 3 103058285 to 103067914 9629 + protein coding gene neuroblastoma ras oncogene
Tssr30956 3 103058302 to 103058352 50 + TSS region transcription start site region 30956
Tssr30957 3 103058353 to 103058365 12 + TSS region transcription start site region 30957
Tssr30958 3 103058709 to 103058742 33 + TSS region transcription start site region 30958
Tssr30959 3 103065043 to 103065057 14 + TSS region transcription start site region 30959
Tssr30960 3 103065372 to 103065394 22 + TSS region transcription start site region 30960
Gm43062 3 103071174 to 103072492 1318 + lincRNA gene predicted gene 43062
Tssr30961 3 103071195 to 103071199 4 + TSS region transcription start site region 30961
Tssr30962 3 103074009 to 103074033 24 + TSS region transcription start site region 30962
Ampd1 3 103074014 to 103099720 25706 + protein coding gene adenosine monophosphate deaminase 1
Tssr30963 3 103074035 to 103074048 13 + TSS region transcription start site region 30963
Gm23820 3 103082876 to 103083175 299 + unclassified non-coding RNA gene predicted gene, 23820
Tssr30964 3 103090183 to 103090197 14 + TSS region transcription start site region 30964
Tssr30965 3 103090230 to 103090241 11 + TSS region transcription start site region 30965
Gm43063 3 103096746 to 103097826 1080 + sense intronic lncRNA gene predicted gene 43063
Cpgi13632 3 103098652 to 103099078 426 CpG island CpG island 13632
Cpgi13633 3 103102029 to 103103310 1281 CpG island CpG island 13633
Tssr30966 3 103102648 to 103102711 63 + TSS region transcription start site region 30966
Dennd2c 3 103102656 to 103169738 67082 + protein coding gene DENN/MADD domain containing 2C
Tssr30967 3 103127390 to 103127406 16 + TSS region transcription start site region 30967
Tssr30968 3 103127527 to 103127541 14 + TSS region transcription start site region 30968
Cpgi13634 3 103171569 to 103172314 745 CpG island CpG island 13634
Bcas2 3 103171660 to 103179163 7503 + protein coding gene breast carcinoma amplified sequence 2
Tssr30969 3 103171714 to 103171725 11 + TSS region transcription start site region 30969
Tssr30970 3 103171728 to 103171767 39 + TSS region transcription start site region 30970
Gm27024 3 103179689 to 103180443 754 - pseudogene predicted gene, 27024
Cpgi13635 3 103182931 to 103183143 212 CpG island CpG island 13635
Gm40113 3 103189293 to 103196724 7431 - lncRNA gene predicted gene, 40113
2410024N13Rik 3 103198226 to 103198975 749 - pseudogene RIKEN cDNA 2410024N13 gene
Gm43060 3 103246975 to 103247263 288 - pseudogene predicted gene 43060
Tssr30971 3 103263060 to 103263067 7 + TSS region transcription start site region 30971
Cpgi13636 3 103279194 to 103280718 1524 CpG island CpG island 13636
Trim33 3 103279293 to 103358770 79477 + protein coding gene tripartite motif-containing 33
Tssr30972 3 103279714 to 103279780 66 + TSS region transcription start site region 30972
Tssr30973 3 103279781 to 103279799 18 + TSS region transcription start site region 30973
Tssr30974 3 103279849 to 103279873 24 + TSS region transcription start site region 30974
D3Wsu106e 3 103296015 to 103296264 249 DNA segment DNA segment, Chr 3, Wayne State University 106, expressed
Tssr30975 3 103309761 to 103309767 6 + TSS region transcription start site region 30975
Tssr30976 3 103321898 to 103321903 5 + TSS region transcription start site region 30976
Tssr30977 3 103325414 to 103325420 6 + TSS region transcription start site region 30977
Tssr30978 3 103329105 to 103329131 26 + TSS region transcription start site region 30978
Gm43061 3 103332143 to 103334383 2240 + sense intronic lncRNA gene predicted gene 43061
Tssr30979 3 103356809 to 103356816 7 + TSS region transcription start site region 30979
Tssr34840 3 103364239 to 103364266 27 - TSS region transcription start site region 34840
Tssr30980 3 103373764 to 103373765 1 + TSS region transcription start site region 30980
Cpgi13637 3 103383230 to 103383500 270 CpG island CpG island 13637
Tssr34841 3 103384979 to 103384984 5 - TSS region transcription start site region 34841
Tssr30981 3 103385174 to 103385191 17 + TSS region transcription start site region 30981
Tssr30982 3 103386879 to 103386891 12 + TSS region transcription start site region 30982
Tssr30983 3 103386983 to 103387004 21 + TSS region transcription start site region 30983
Gm25009 3 103392933 to 103393034 101 + snoRNA gene predicted gene, 25009
Tssr34842 3 103414617 to 103414619 2 - TSS region transcription start site region 34842
Gm25869 3 103427437 to 103427543 106 + snRNA gene predicted gene, 25869
Gm25199 3 103445697 to 103445800 103 - snRNA gene predicted gene, 25199
Tssr30984 3 103484713 to 103484755 42 + TSS region transcription start site region 30984
D3Mit192 3 103488927 to 103489122 195 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 192
Gm34049 3 103501465 to 103551366 49901 + lncRNA gene predicted gene, 34049
Cpgi13638 3 103575128 to 103576755 1627 CpG island CpG island 13638
Tssr30985 3 103575238 to 103575255 17 + TSS region transcription start site region 30985
Syt6 3 103575242 to 103645567 70325 + protein coding gene synaptotagmin VI
Tssr30986 3 103575275 to 103575286 11 + TSS region transcription start site region 30986
Tssr30987 3 103576133 to 103576147 14 + TSS region transcription start site region 30987
Gm43066 3 103601943 to 103603202 1259 + sense intronic lncRNA gene predicted gene 43066
Atg4a-ps 3 103643954 to 103646068 2114 - pseudogene autophagy related 4A, pseudogene
Tssr34843 3 103646031 to 103646040 9 - TSS region transcription start site region 34843
Gm25325 3 103666542 to 103666627 85 - miRNA gene predicted gene, 25325
Gm15986 3 103694798 to 103695197 399 + pseudogene predicted gene 15986