Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:102898230-103868500

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia5b 3 100747868 to 103837463 3089595 QTL collagen induced arthritis QTL 5b
Sycp1 3 102818499 to 102936100 117601 - protein coding gene synaptonemal complex protein 1
Tssr34834 3 102925233 to 102925247 14 - TSS region transcription start site region 34834
Tssr991 3 102935252 to 102935256 4 - TSS region transcription start site region 991
Cpgi13628 3 102935314 to 102936250 936 CpG island CpG island 13628
Tssr34835 3 102936093 to 102936107 14 - TSS region transcription start site region 34835
Nr1h5 3 102939658 to 102964133 24475 - protein coding gene nuclear receptor subfamily 1, group H, member 5
Gm22826 3 102951949 to 102952113 164 - snRNA gene predicted gene, 22826
Tssr34836 3 102964124 to 102964137 13 - TSS region transcription start site region 34836
Cpgi13629 3 102995544 to 102996340 796 CpG island CpG island 13629
Tssr30945 3 102995709 to 102995788 79 + TSS region transcription start site region 30945
Sike1 3 102995740 to 103003914 8174 + protein coding gene suppressor of IKBKE 1
Tssr30946 3 102995799 to 102995810 11 + TSS region transcription start site region 30946
Tssr30947 3 102996123 to 102996160 37 + TSS region transcription start site region 30947
Cpgi13630 3 103020189 to 103021529 1340 CpG island CpG island 13630
Tssr34837 3 103020335 to 103020347 12 - TSS region transcription start site region 34837
Csde1 3 103020431 to 103058186 37755 + protein coding gene cold shock domain containing E1, RNA binding
Tssr992 3 103020451 to 103020469 18 - TSS region transcription start site region 992
Tssr30948 3 103020594 to 103020635 41 + TSS region transcription start site region 30948
Tssr34838 3 103020932 to 103020953 21 - TSS region transcription start site region 34838
Tssr30949 3 103028842 to 103028868 26 + TSS region transcription start site region 30949
Tssr34839 3 103028892 to 103028919 27 - TSS region transcription start site region 34839
Tssr30950 3 103028983 to 103029068 85 + TSS region transcription start site region 30950
Tssr30951 3 103029105 to 103029130 25 + TSS region transcription start site region 30951
Tssr30952 3 103030132 to 103030177 45 + TSS region transcription start site region 30952
Tssr30953 3 103043623 to 103043646 23 + TSS region transcription start site region 30953
Tssr30954 3 103049655 to 103049667 12 + TSS region transcription start site region 30954
Tssr30955 3 103056974 to 103057007 33 + TSS region transcription start site region 30955
Cpgi13631 3 103058234 to 103058662 428 CpG island CpG island 13631
Nras 3 103058285 to 103067914 9629 + protein coding gene neuroblastoma ras oncogene
Tssr30956 3 103058302 to 103058352 50 + TSS region transcription start site region 30956
Tssr30957 3 103058353 to 103058365 12 + TSS region transcription start site region 30957
Tssr30958 3 103058709 to 103058742 33 + TSS region transcription start site region 30958
Tssr30959 3 103065043 to 103065057 14 + TSS region transcription start site region 30959
Tssr30960 3 103065372 to 103065394 22 + TSS region transcription start site region 30960
Gm43062 3 103071174 to 103072492 1318 + lincRNA gene predicted gene 43062
Tssr30961 3 103071195 to 103071199 4 + TSS region transcription start site region 30961
Tssr30962 3 103074009 to 103074033 24 + TSS region transcription start site region 30962
Ampd1 3 103074014 to 103099720 25706 + protein coding gene adenosine monophosphate deaminase 1
Tssr30963 3 103074035 to 103074048 13 + TSS region transcription start site region 30963
Gm23820 3 103082876 to 103083175 299 + unclassified non-coding RNA gene predicted gene, 23820
Tssr30964 3 103090183 to 103090197 14 + TSS region transcription start site region 30964
Tssr30965 3 103090230 to 103090241 11 + TSS region transcription start site region 30965
Gm43063 3 103096746 to 103097826 1080 + sense intronic lncRNA gene predicted gene 43063
Cpgi13632 3 103098652 to 103099078 426 CpG island CpG island 13632
Cpgi13633 3 103102029 to 103103310 1281 CpG island CpG island 13633
Tssr30966 3 103102648 to 103102711 63 + TSS region transcription start site region 30966
Dennd2c 3 103102656 to 103169738 67082 + protein coding gene DENN/MADD domain containing 2C
Tssr30967 3 103127390 to 103127406 16 + TSS region transcription start site region 30967
Tssr30968 3 103127527 to 103127541 14 + TSS region transcription start site region 30968
Cpgi13634 3 103171569 to 103172314 745 CpG island CpG island 13634
Bcas2 3 103171660 to 103179163 7503 + protein coding gene breast carcinoma amplified sequence 2
Tssr30969 3 103171714 to 103171725 11 + TSS region transcription start site region 30969
Tssr30970 3 103171728 to 103171767 39 + TSS region transcription start site region 30970
Gm27024 3 103179689 to 103180443 754 - pseudogene predicted gene, 27024
Cpgi13635 3 103182931 to 103183143 212 CpG island CpG island 13635
Gm40113 3 103189293 to 103196724 7431 - lncRNA gene predicted gene, 40113
2410024N13Rik 3 103198226 to 103198975 749 - pseudogene RIKEN cDNA 2410024N13 gene
Gm43060 3 103246975 to 103247263 288 - pseudogene predicted gene 43060
Tssr30971 3 103263060 to 103263067 7 + TSS region transcription start site region 30971
Cpgi13636 3 103279194 to 103280718 1524 CpG island CpG island 13636
Trim33 3 103279293 to 103358770 79477 + protein coding gene tripartite motif-containing 33
Tssr30972 3 103279714 to 103279780 66 + TSS region transcription start site region 30972
Tssr30973 3 103279781 to 103279799 18 + TSS region transcription start site region 30973
Tssr30974 3 103279849 to 103279873 24 + TSS region transcription start site region 30974
D3Wsu106e 3 103296015 to 103296264 249 DNA segment DNA segment, Chr 3, Wayne State University 106, expressed
Tssr30975 3 103309761 to 103309767 6 + TSS region transcription start site region 30975
Tssr30976 3 103321898 to 103321903 5 + TSS region transcription start site region 30976
Tssr30977 3 103325414 to 103325420 6 + TSS region transcription start site region 30977
Tssr30978 3 103329105 to 103329131 26 + TSS region transcription start site region 30978
Gm43061 3 103332143 to 103334383 2240 + sense intronic lncRNA gene predicted gene 43061
Tssr30979 3 103356809 to 103356816 7 + TSS region transcription start site region 30979
Tssr34840 3 103364239 to 103364266 27 - TSS region transcription start site region 34840
Tssr30980 3 103373764 to 103373765 1 + TSS region transcription start site region 30980
Cpgi13637 3 103383230 to 103383500 270 CpG island CpG island 13637
Tssr34841 3 103384979 to 103384984 5 - TSS region transcription start site region 34841
Tssr30981 3 103385174 to 103385191 17 + TSS region transcription start site region 30981
Tssr30982 3 103386879 to 103386891 12 + TSS region transcription start site region 30982
Tssr30983 3 103386983 to 103387004 21 + TSS region transcription start site region 30983
Gm25009 3 103392933 to 103393034 101 + snoRNA gene predicted gene, 25009
Tssr34842 3 103414617 to 103414619 2 - TSS region transcription start site region 34842
Gm25869 3 103427437 to 103427543 106 + snRNA gene predicted gene, 25869
Gm25199 3 103445697 to 103445800 103 - snRNA gene predicted gene, 25199
Tssr30984 3 103484713 to 103484755 42 + TSS region transcription start site region 30984
D3Mit192 3 103488927 to 103489122 195 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 192
Gm34049 3 103501465 to 103551366 49901 + lncRNA gene predicted gene, 34049
Cpgi13638 3 103575128 to 103576755 1627 CpG island CpG island 13638
Tssr30985 3 103575238 to 103575255 17 + TSS region transcription start site region 30985
Syt6 3 103575242 to 103645567 70325 + protein coding gene synaptotagmin VI
Tssr30986 3 103575275 to 103575286 11 + TSS region transcription start site region 30986
Tssr30987 3 103576133 to 103576147 14 + TSS region transcription start site region 30987
Gm43066 3 103601943 to 103603202 1259 + sense intronic lncRNA gene predicted gene 43066
Atg4a-ps 3 103643954 to 103646068 2114 - pseudogene autophagy related 4A, pseudogene
Tssr34843 3 103646031 to 103646040 9 - TSS region transcription start site region 34843
Gm25325 3 103666542 to 103666627 85 - miRNA gene predicted gene, 25325
Gm15986 3 103694798 to 103695197 399 + pseudogene predicted gene 15986
Olfml3 3 103735394 to 103738001 2607 - protein coding gene olfactomedin-like 3
Tssr34844 3 103735713 to 103735724 11 - TSS region transcription start site region 34844
Tssr34845 3 103735741 to 103735754 13 - TSS region transcription start site region 34845
Tssr30988 3 103735853 to 103735869 16 + TSS region transcription start site region 30988
Tssr34846 3 103737938 to 103737974 36 - TSS region transcription start site region 34846
Tssr34847 3 103737995 to 103738006 11 - TSS region transcription start site region 34847
Gm10964 3 103739366 to 103746376 7010 + protein coding gene predicted gene 10964
Hipk1 3 103739815 to 103791563 51748 - protein coding gene homeodomain interacting protein kinase 1
Tssr34848 3 103741940 to 103741944 4 - TSS region transcription start site region 34848
Tssr34849 3 103749431 to 103749446 15 - TSS region transcription start site region 34849
Gm43149 3 103765695 to 103767116 1421 - sense intronic lncRNA gene predicted gene 43149
Gm15886 3 103770702 to 103777215 6513 + antisense lncRNA gene predicted gene 15886
Tssr30989 3 103771910 to 103771918 8 + TSS region transcription start site region 30989
Tssr30990 3 103771926 to 103771938 12 + TSS region transcription start site region 30990
Tssr30991 3 103774171 to 103774183 12 + TSS region transcription start site region 30991
Tssr30992 3 103774186 to 103774197 11 + TSS region transcription start site region 30992
Tssr34850 3 103776809 to 103776811 2 - TSS region transcription start site region 34850
Tssr34851 3 103778135 to 103778151 16 - TSS region transcription start site region 34851
Tssr34852 3 103778156 to 103778177 21 - TSS region transcription start site region 34852
Tssr34853 3 103778188 to 103778201 13 - TSS region transcription start site region 34853
Tssr34854 3 103778257 to 103778277 20 - TSS region transcription start site region 34854
Tssr34855 3 103778309 to 103778326 17 - TSS region transcription start site region 34855
Gm43387 3 103781914 to 103782979 1065 - sense intronic lncRNA gene predicted gene 43387
Tssr30993 3 103787479 to 103787489 10 + TSS region transcription start site region 30993
Tssr30994 3 103787490 to 103787497 7 + TSS region transcription start site region 30994
Tssr30995 3 103787527 to 103787532 5 + TSS region transcription start site region 30995
Cpgi13639 3 103790565 to 103791672 1107 CpG island CpG island 13639
Tssr30996 3 103791154 to 103791165 11 + TSS region transcription start site region 30996
Tssr34856 3 103791222 to 103791318 96 - TSS region transcription start site region 34856
Tssr34857 3 103791387 to 103791410 23 - TSS region transcription start site region 34857
Tssr34858 3 103791537 to 103791563 26 - TSS region transcription start site region 34858
Tssr34859 3 103791573 to 103791606 33 - TSS region transcription start site region 34859
Tssr34860 3 103791921 to 103791936 15 - TSS region transcription start site region 34860
Tssr34861 3 103792547 to 103792571 24 - TSS region transcription start site region 34861
Tssr34862 3 103792573 to 103792590 17 - TSS region transcription start site region 34862
Tssr34863 3 103792605 to 103792616 11 - TSS region transcription start site region 34863
Dclre1b 3 103800605 to 103809387 8782 - protein coding gene DNA cross-link repair 1B
Tssr30997 3 103803121 to 103803129 8 + TSS region transcription start site region 30997
Gm15471 3 103803129 to 103808439 5310 + lncRNA gene predicted gene 15471
Tssr30998 3 103803633 to 103803642 9 + TSS region transcription start site region 30998
Cpgi13640 3 103808866 to 103810044 1178 CpG island CpG island 13640
Tssr34864 3 103809067 to 103809079 12 - TSS region transcription start site region 34864
Tssr34865 3 103809278 to 103809409 131 - TSS region transcription start site region 34865
Ap4b1 3 103809520 to 103822025 12505 + protein coding gene adaptor-related protein complex AP-4, beta 1
Gm43064 3 103809573 to 103838648 29075 + protein coding gene predicted gene 43064
Tssr30999 3 103809575 to 103809635 60 + TSS region transcription start site region 30999
Tssr31000 3 103809648 to 103809667 19 + TSS region transcription start site region 31000
Tssr31001 3 103832562 to 103832567 5 + TSS region transcription start site region 31001
Bcl2l15 3 103832601 to 103854618 22017 + protein coding gene BCLl2-like 15
Tssr31002 3 103832695 to 103832727 32 + TSS region transcription start site region 31002
Tssr31003 3 103832741 to 103832840 99 + TSS region transcription start site region 31003
Tssr31004 3 103832848 to 103832854 6 + TSS region transcription start site region 31004
Tssr31005 3 103832866 to 103832877 11 + TSS region transcription start site region 31005
Tssr31006 3 103836068 to 103836079 11 + TSS region transcription start site region 31006
D3Mit284 3 103837346 to 103837463 117 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 284
Tssr31007 3 103846807 to 103846818 11 + TSS region transcription start site region 31007
Tssr31008 3 103846835 to 103846855 20 + TSS region transcription start site region 31008
Tssr31009 3 103846857 to 103846865 8 + TSS region transcription start site region 31009
Tssr31010 3 103846894 to 103846902 8 + TSS region transcription start site region 31010
Tssr31011 3 103851242 to 103851249 7 + TSS region transcription start site region 31011
Tssr31012 3 103851269 to 103851279 10 + TSS region transcription start site region 31012
Tssr31013 3 103851289 to 103851304 15 + TSS region transcription start site region 31013
Tssr31014 3 103851308 to 103851323 15 + TSS region transcription start site region 31014
Tssr31015 3 103851333 to 103851344 11 + TSS region transcription start site region 31015
Tssr31016 3 103853244 to 103853253 9 + TSS region transcription start site region 31016
Tssr31017 3 103857594 to 103857625 31 + TSS region transcription start site region 31017
Tssr34866 3 103858288 to 103858318 30 - TSS region transcription start site region 34866
Tssr31018 3 103859429 to 103859460 31 + TSS region transcription start site region 31018
Tssr31019 3 103859740 to 103859751 11 + TSS region transcription start site region 31019
Ptpn22 3 103859795 to 103912247 52452 + protein coding gene protein tyrosine phosphatase, non-receptor type 22 (lymphoid)
Tssr34867 3 103859897 to 103859912 15 - TSS region transcription start site region 34867
Tssr31020 3 103860020 to 103860045 25 + TSS region transcription start site region 31020
Tssr31021 3 103860265 to 103860293 28 + TSS region transcription start site region 31021
Tssr31022 3 103860294 to 103860307 13 + TSS region transcription start site region 31022
Tssr31023 3 103860312 to 103860329 17 + TSS region transcription start site region 31023
Tssr31024 3 103860346 to 103860359 13 + TSS region transcription start site region 31024
Tssr31025 3 103860378 to 103860389 11 + TSS region transcription start site region 31025
Tssr34868 3 103862634 to 103862646 12 - TSS region transcription start site region 34868
Gm15472 3 103863166 to 103864423 1257 + sense intronic lncRNA gene predicted gene 15472
Tssr31026 3 103863197 to 103863200 3 + TSS region transcription start site region 31026
Tssr31027 3 103864073 to 103864076 3 + TSS region transcription start site region 31027
Gm43065 3 103864706 to 103866797 2091 + sense intronic lncRNA gene predicted gene 43065
Tssr34869 3 103868090 to 103868099 9 - TSS region transcription start site region 34869
Tssr34870 3 103868145 to 103868167 22 - TSS region transcription start site region 34870