Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:10231682-19511692

Filter by:
420 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm37421 3 10232180 to 10232311 131 + pseudogene predicted gene, 37421
1700029B24Rik 3 10241812 to 10242308 496 + unclassified gene RIKEN cDNA 1700029B24 gene
Fabp12 3 10244209 to 10301183 56974 - protein coding gene fatty acid binding protein 12
Tssr32607 3 10254200 to 10254208 8 - TSS region transcription start site region 32607
Tssr32608 3 10254213 to 10254262 49 - TSS region transcription start site region 32608
Tssr28366 3 10288045 to 10288085 40 + TSS region transcription start site region 28366
Tssr32609 3 10301169 to 10301202 33 - TSS region transcription start site region 32609
Tssr32610 3 10301209 to 10301218 9 - TSS region transcription start site region 32610
Tssr32611 3 10301298 to 10301310 12 - TSS region transcription start site region 32611
A930014E01Rik 3 10304791 to 10305120 329 + lncRNA gene RIKEN cDNA A930014E01 gene
Gm38364 3 10309048 to 10309226 178 + pseudogene predicted gene, 38364
Impa1 3 10311956 to 10331439 19483 - protein coding gene inositol (myo)-1(or 4)-monophosphatase 1
Gm38303 3 10321712 to 10335681 13969 - protein coding gene predicted gene, 38303
Cpgi12981 3 10330983 to 10331583 600 CpG island CpG island 12981
Tssr32612 3 10331284 to 10331286 2 - TSS region transcription start site region 32612
Tssr32613 3 10331358 to 10331425 67 - TSS region transcription start site region 32613
Slc10a5 3 10331734 to 10335656 3922 - protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 5
Tssr32614 3 10335409 to 10335441 32 - TSS region transcription start site region 32614
Tssr32615 3 10335650 to 10335661 11 - TSS region transcription start site region 32615
Tssr32616 3 10335676 to 10335687 11 - TSS region transcription start site region 32616
Tssr32617 3 10335689 to 10335707 18 - TSS region transcription start site region 32617
Tssr32618 3 10335715 to 10335724 9 - TSS region transcription start site region 32618
Zfand1 3 10339953 to 10351317 11364 - protein coding gene zinc finger, AN1-type domain 1
Tssr28367 3 10342788 to 10342837 49 + TSS region transcription start site region 28367
Tssr32619 3 10346035 to 10346039 4 - TSS region transcription start site region 32619
Tssr32620 3 10346105 to 10346125 20 - TSS region transcription start site region 32620
Cpgi12982 3 10350925 to 10351566 641 CpG island CpG island 12982
Tssr28368 3 10350972 to 10350981 9 + TSS region transcription start site region 28368
Tssr32621 3 10351314 to 10351342 28 - TSS region transcription start site region 32621
Tssr28369 3 10351511 to 10351552 41 + TSS region transcription start site region 28369
Cpgi12983 3 10366857 to 10367247 390 CpG island CpG island 12983
Tssr28370 3 10366903 to 10366922 19 + TSS region transcription start site region 28370
Tssr28371 3 10366927 to 10366963 36 + TSS region transcription start site region 28371
Tssr28372 3 10366967 to 10366987 20 + TSS region transcription start site region 28372
Chmp4c 3 10366973 to 10391005 24032 + protein coding gene charged multivesicular body protein 4C
Tssr28373 3 10366992 to 10367001 9 + TSS region transcription start site region 28373
Tssr28374 3 10367009 to 10367026 17 + TSS region transcription start site region 28374
Snx16 3 10417817 to 10440102 22285 - protein coding gene sorting nexin 16
5430403G19Rik 3 10426593 to 10428865 2272 unclassified non-coding RNA gene RIKEN cDNA 5430403G19 gene
A630040H13Rik 3 10430763 to 10434206 3443 unclassified gene RIKEN cDNA A630040H13 gene
Cpgi12984 3 10439393 to 10440235 842 CpG island CpG island 12984
Tssr32622 3 10439960 to 10439977 17 - TSS region transcription start site region 32622
Tssr32623 3 10439995 to 10440006 11 - TSS region transcription start site region 32623
Tssr32624 3 10440008 to 10440022 14 - TSS region transcription start site region 32624
Tssr32625 3 10440054 to 10440127 73 - TSS region transcription start site region 32625
D3Mit265 3 10636379 to 10636517 138 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 265
Gm37831 3 10646316 to 10648102 1786 + unclassified gene predicted gene, 37831
Gm18692 3 10753918 to 10754428 510 - pseudogene predicted gene, 18692
Tssr28375 3 10760335 to 10760380 45 + TSS region transcription start site region 28375
Gm37244 3 10772919 to 10774899 1980 - unclassified gene predicted gene, 37244
Gm33551 3 10848895 to 10857537 8642 + lncRNA gene predicted gene, 33551
Tssr32626 3 10971968 to 10971973 5 - TSS region transcription start site region 32626
Gm22795 3 10975469 to 10975586 117 - snoRNA gene predicted gene, 22795
Gm21631 3 11008850 to 11009603 753 - pseudogene predicted gene, 21631
Gm8910 3 11013514 to 11015199 1685 - pseudogene predicted gene 8910
Tssr32627 3 11015192 to 11015193 1 - TSS region transcription start site region 32627
Gm37832 3 11044170 to 11044358 188 - pseudogene predicted gene, 37832
Gm22547 3 11154337 to 11154437 100 + miRNA gene predicted gene, 22547
Tssr32628 3 11211244 to 11211253 9 - TSS region transcription start site region 32628
Tssr32629 3 11214202 to 11214211 9 - TSS region transcription start site region 32629
Gm8919 3 11658497 to 11659510 1013 - pseudogene predicted gene 8919
Gm10745 3 11823229 to 11844359 21130 - lincRNA gene predicted gene 10745
Tssr32630 3 11904909 to 11904924 15 - TSS region transcription start site region 32630
Tssr820 3 12155268 to 12155287 19 + TSS region transcription start site region 820
Gm37996 3 12384243 to 12384609 366 - pseudogene predicted gene, 37996
Gm18431 3 12521465 to 12522489 1024 + pseudogene predicted gene, 18431
Gm2429 3 12631260 to 12631845 585 + pseudogene predicted gene 2429
D3Mit90 3 12683956 to 12684099 143 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 90
Gm18232 3 12829051 to 12831568 2517 + pseudogene predicted gene, 18232
Tssr28376 3 12855785 to 12855795 10 + TSS region transcription start site region 28376
Gm8935 3 12855836 to 12858633 2797 + pseudogene predicted pseudogene 8935
Gm8939 3 12892451 to 12893414 963 - pseudogene predicted gene 8939
Gm38317 3 12975359 to 12975701 342 + pseudogene predicted gene, 38317
Gm37813 3 13288197 to 13291891 3694 + unclassified gene predicted gene, 37813
Gm37197 3 13429558 to 13429958 400 + pseudogene predicted gene, 37197
Gm2464 3 13470439 to 13471829 1390 - lincRNA gene predicted gene 2464
Cpgi12985 3 13471360 to 13472187 827 CpG island CpG island 12985
Tssr28377 3 13471608 to 13471635 27 + TSS region transcription start site region 28377
Tssr28378 3 13471637 to 13471733 96 + TSS region transcription start site region 28378
Ralyl 3 13471655 to 14182287 710632 + protein coding gene RALY RNA binding protein-like
Tssr28379 3 13471747 to 13471758 11 + TSS region transcription start site region 28379
Tssr28380 3 13472023 to 13472030 7 + TSS region transcription start site region 28380
Tssr28381 3 13472450 to 13472469 19 + TSS region transcription start site region 28381
Tssr821 3 13472633 to 13472670 37 + TSS region transcription start site region 821
Cpgi12986 3 13472730 to 13473423 693 CpG island CpG island 12986
Tssr28382 3 13472871 to 13472927 56 + TSS region transcription start site region 28382
Tssr28383 3 13473205 to 13473218 13 + TSS region transcription start site region 28383
Tssr28384 3 13510011 to 13510016 5 + TSS region transcription start site region 28384
Tssr28385 3 13525946 to 13525947 1 + TSS region transcription start site region 28385
4930539N22Rik 3 13597139 to 13652865 55726 - lncRNA gene RIKEN cDNA 4930539N22 gene
Tssr28386 3 13610508 to 13610511 3 + TSS region transcription start site region 28386
Gm37164 3 13669509 to 13670145 636 - pseudogene predicted gene, 37164
Tssr28387 3 13748927 to 13748930 3 + TSS region transcription start site region 28387
Gm2474 3 13749938 to 13750483 545 + pseudogene predicted gene 2474
Tssr28388 3 13781746 to 13781750 4 + TSS region transcription start site region 28388
Tssr28389 3 13833436 to 13833445 9 + TSS region transcription start site region 28389
Gm19114 3 13838875 to 13840231 1356 - pseudogene predicted gene, 19114
Gm25981 3 13845686 to 13845980 294 + unclassified non-coding RNA gene predicted gene, 25981
C230073O14Rik 3 13847734 to 13850863 3129 unclassified gene RIKEN cDNA C230073O14 gene
Tssr28390 3 13884944 to 13884948 4 + TSS region transcription start site region 28390
Gm41998 3 13914161 to 13934435 20274 - lncRNA gene predicted gene, 41998
Tssr32631 3 13933883 to 13933906 23 - TSS region transcription start site region 32631
Tssr28391 3 13946368 to 13946379 11 + TSS region transcription start site region 28391
Tssr28392 3 13946385 to 13946416 31 + TSS region transcription start site region 28392
Gm22026 3 14029482 to 14029762 280 - unclassified non-coding RNA gene predicted gene, 22026
Gm18661 3 14098042 to 14099016 974 + pseudogene predicted gene, 18661
Gm19067 3 14150147 to 14150785 638 + pseudogene predicted gene, 19067
Gm18659 3 14163685 to 14164632 947 - pseudogene predicted gene, 18659
Gm23112 3 14267315 to 14267439 124 - snoRNA gene predicted gene, 23112
Gm38311 3 14330227 to 14330391 164 + pseudogene predicted gene, 38311
Gm6300 3 14363117 to 14374239 11122 + pseudogene predicted gene 6300
Gm37358 3 14383922 to 14384400 478 - pseudogene predicted gene, 37358
Tssr32632 3 14384430 to 14384448 18 - TSS region transcription start site region 32632
Gm8955 3 14428492 to 14435009 6517 - pseudogene predicted gene 8955
Slc7a12 3 14480691 to 14505819 25128 + protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 12
Tssr28393 3 14480692 to 14480707 15 + TSS region transcription start site region 28393
Tssr28394 3 14481263 to 14481306 43 + TSS region transcription start site region 28394
Tssr28395 3 14481382 to 14481392 10 + TSS region transcription start site region 28395
Tssr822 3 14504457 to 14504461 4 + TSS region transcription start site region 822
Tssr28396 3 14506094 to 14506102 8 + TSS region transcription start site region 28396
Tssr28397 3 14506183 to 14506192 9 + TSS region transcription start site region 28397
Tssr28398 3 14506290 to 14506301 11 + TSS region transcription start site region 28398
Tssr28399 3 14506446 to 14506457 11 + TSS region transcription start site region 28399
Tssr28400 3 14506637 to 14506655 18 + TSS region transcription start site region 28400
Tssr28401 3 14506658 to 14506661 3 + TSS region transcription start site region 28401
Tssr28402 3 14507927 to 14507936 9 + TSS region transcription start site region 28402
Gm8957 3 14511084 to 14512095 1011 - pseudogene predicted gene 8957
Tssr28403 3 14530627 to 14530656 29 + TSS region transcription start site region 28403
Cpgi12987 3 14533694 to 14534351 657 CpG island CpG island 12987
Tssr32633 3 14533778 to 14533818 40 - TSS region transcription start site region 32633
Lrrcc1 3 14533788 to 14572658 38870 + protein coding gene leucine rich repeat and coiled-coil domain containing 1
Tssr28404 3 14533804 to 14533815 11 + TSS region transcription start site region 28404
Tssr28405 3 14533817 to 14533866 49 + TSS region transcription start site region 28405
Tssr28406 3 14533867 to 14533889 22 + TSS region transcription start site region 28406
Tssr28407 3 14533907 to 14533920 13 + TSS region transcription start site region 28407
Gm17119 3 14564402 to 14564681 279 + pseudogene predicted gene 17119
Cpgi12988 3 14578339 to 14579281 942 CpG island CpG island 12988
Tssr28408 3 14578609 to 14578687 78 + TSS region transcription start site region 28408
E2f5 3 14578641 to 14606309 27668 + protein coding gene E2F transcription factor 5
Tssr28409 3 14578741 to 14578759 18 + TSS region transcription start site region 28409
Tssr28410 3 14578786 to 14578807 21 + TSS region transcription start site region 28410
Tssr28411 3 14578891 to 14578925 34 + TSS region transcription start site region 28411
Tssr28412 3 14603734 to 14603764 30 + TSS region transcription start site region 28412
Rbis 3 14606289 to 14611256 4967 - protein coding gene ribosomal biogenesis factor
Cpgi12989 3 14611020 to 14611799 779 CpG island CpG island 12989
Tssr32634 3 14611201 to 14611212 11 - TSS region transcription start site region 32634
Tssr32635 3 14611250 to 14611275 25 - TSS region transcription start site region 32635
Gm38151 3 14628952 to 14629240 288 - pseudogene predicted gene, 38151
Cpgi12990 3 14641458 to 14641977 519 CpG island CpG island 12990
Tssr28413 3 14641722 to 14641754 32 + TSS region transcription start site region 28413
Car13 3 14641727 to 14663002 21275 + protein coding gene carbonic anhydrase 13
Tssr28414 3 14641760 to 14641797 37 + TSS region transcription start site region 28414
Tssr28415 3 14644912 to 14644941 29 + TSS region transcription start site region 28415
Tssr28416 3 14649833 to 14649839 6 + TSS region transcription start site region 28416
Tssr28417 3 14661869 to 14661888 19 + TSS region transcription start site region 28417
Cpgi12991 3 14680428 to 14680602 174 CpG island CpG island 12991
Tssr28418 3 14704603 to 14704612 9 + TSS region transcription start site region 28418
Gm5843 3 14722415 to 14729018 6603 + pseudogene predicted gene 5843
Car1 3 14766214 to 14808365 42151 - protein coding gene carbonic anhydrase 1
Tssr28419 3 14766412 to 14766419 7 + TSS region transcription start site region 28419
Tssr28420 3 14766458 to 14766467 9 + TSS region transcription start site region 28420
Tssr32636 3 14766490 to 14766491 1 - TSS region transcription start site region 32636
Tssr32637 3 14766492 to 14766507 15 - TSS region transcription start site region 32637
Tssr28421 3 14766534 to 14766542 8 + TSS region transcription start site region 28421
Tssr28422 3 14766543 to 14766593 50 + TSS region transcription start site region 28422
Tssr32638 3 14766570 to 14766597 27 - TSS region transcription start site region 32638
Tssr32639 3 14766610 to 14766616 6 - TSS region transcription start site region 32639
Tssr28423 3 14767412 to 14767418 6 + TSS region transcription start site region 28423
Tssr823 3 14767480 to 14767485 5 - TSS region transcription start site region 823
Tssr28424 3 14767480 to 14767489 9 + TSS region transcription start site region 28424
Tssr32640 3 14767495 to 14767497 2 - TSS region transcription start site region 32640
Tssr32641 3 14767512 to 14767522 10 - TSS region transcription start site region 32641
Tssr28425 3 14767530 to 14767536 6 + TSS region transcription start site region 28425
Tssr32642 3 14767551 to 14767562 11 - TSS region transcription start site region 32642
Tssr32643 3 14769212 to 14769219 7 - TSS region transcription start site region 32643
Tssr28426 3 14770163 to 14770190 27 + TSS region transcription start site region 28426
Tssr32644 3 14770206 to 14770247 41 - TSS region transcription start site region 32644
D3Mit237 3 14770402 to 14770501 99 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 237
Tssr28427 3 14776219 to 14776238 19 + TSS region transcription start site region 28427
Tssr32645 3 14776254 to 14776276 22 - TSS region transcription start site region 32645
Tssr32646 3 14778452 to 14778466 14 - TSS region transcription start site region 32646
Gm16399 3 14802356 to 14802574 218 - pseudogene predicted pseudogene 16399
Tssr32647 3 14802603 to 14802637 34 - TSS region transcription start site region 32647
Tssr32648 3 14808358 to 14808373 15 - TSS region transcription start site region 32648
Tssr824 3 14808385 to 14808399 14 - TSS region transcription start site region 824
Tssr825 3 14808409 to 14808421 12 - TSS region transcription start site region 825
Gm41999 3 14825509 to 14864243 38734 - lncRNA gene predicted gene, 41999
Tssr28428 3 14862805 to 14862833 28 + TSS region transcription start site region 28428
Tssr28429 3 14862840 to 14862855 15 + TSS region transcription start site region 28429
Tssr32649 3 14863235 to 14863254 19 - TSS region transcription start site region 32649
Tssr28430 3 14863428 to 14863446 18 + TSS region transcription start site region 28430
Tssr28431 3 14863451 to 14863467 16 + TSS region transcription start site region 28431
Tssr28432 3 14863476 to 14863483 7 + TSS region transcription start site region 28432
Tssr28433 3 14863486 to 14863494 8 + TSS region transcription start site region 28433
Tssr28434 3 14863495 to 14863521 26 + TSS region transcription start site region 28434
Car3 3 14863538 to 14872381 8843 + protein coding gene carbonic anhydrase 3
Tssr32650 3 14863921 to 14863937 16 - TSS region transcription start site region 32650
Tssr32651 3 14864042 to 14864054 12 - TSS region transcription start site region 32651
Tssr32652 3 14864057 to 14864071 14 - TSS region transcription start site region 32652
Tssr28435 3 14864162 to 14864173 11 + TSS region transcription start site region 28435