Gene symbol |
Chromo- some |
Coordinates (bp, mm10) |
Size (bp) |
Strand |
Feature Type |
Gene name |
---|---|---|---|---|---|---|
Cia5b | 3 | 3089595 | QTL | collagen induced arthritis QTL 5b | ||
D3Mit248 | 3 | 147 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 248 | ||
Tssr30927 | 3 | 2 | + | TSS region | transcription start site region 30927 | |
Gm43242 | 3 | 1775 | + | lincRNA gene | predicted gene 43242 | |
Gm40110 | 3 | 1778 | - | lncRNA gene | predicted gene, 40110 | |
Gm33679 | 3 | 6441 | - | lncRNA gene | predicted gene, 33679 | |
Gm43245 | 3 | 467 | - | pseudogene | predicted gene 43245 | |
Tssr30928 | 3 | 8 | + | TSS region | transcription start site region 30928 | |
Cpgi13626 | 3 | 816 | CpG island | CpG island 13626 | ||
Tssr30929 | 3 | 14 | + | TSS region | transcription start site region 30929 | |
Tssr30930 | 3 | 14 | + | TSS region | transcription start site region 30930 | |
Ngf | 3 | 51094 | + | protein coding gene | nerve growth factor | |
Tssr30931 | 3 | 7 | + | TSS region | transcription start site region 30931 | |
Gm42679 | 3 | 2905 | + | sense intronic lncRNA gene | predicted gene 42679 | |
Gm46818 | 3 | 5853 | - | lncRNA gene | predicted gene, 46818 | |
Tssr30932 | 3 | 16 | + | TSS region | transcription start site region 30932 | |
Tssr30933 | 3 | 12 | + | TSS region | transcription start site region 30933 | |
Tssr30934 | 3 | 8 | + | TSS region | transcription start site region 30934 | |
Tssr30935 | 3 | 49 | + | TSS region | transcription start site region 30935 | |
Gm42678 | 3 | 2220 | + | lincRNA gene | predicted gene 42678 | |
Gm19202 | 3 | 807 | - | pseudogene | predicted gene, 19202 | |
Gm42677 | 3 | 126 | - | pseudogene | predicted gene 42677 | |
Gm40112 | 3 | 2736 | + | lncRNA gene | predicted gene, 40112 | |
Gm42682 | 3 | 1264 | + | lincRNA gene | predicted gene 42682 | |
Tspan2os | 3 | 15186 | - | antisense lncRNA gene | tetraspanin 2, opposite strand | |
Tssr30936 | 3 | 44 | + | TSS region | transcription start site region 30936 | |
Tssr30937 | 3 | 23 | + | TSS region | transcription start site region 30937 | |
Cpgi13627 | 3 | 1223 | CpG island | CpG island 13627 | ||
Tssr30938 | 3 | 34 | + | TSS region | transcription start site region 30938 | |
Tspan2 | 3 | 37540 | + | protein coding gene | tetraspanin 2 | |
Tssr30939 | 3 | 49 | + | TSS region | transcription start site region 30939 | |
Tssr30940 | 3 | 21 | + | TSS region | transcription start site region 30940 | |
Tssr30941 | 3 | 34 | + | TSS region | transcription start site region 30941 | |
Tssr30942 | 3 | 4 | + | TSS region | transcription start site region 30942 | |
Tssr30943 | 3 | 11 | + | TSS region | transcription start site region 30943 | |
Tssr30944 | 3 | 7 | + | TSS region | transcription start site region 30944 | |
Tshb | 3 | 7253 | - | protein coding gene | thyroid stimulating hormone, beta subunit | |
Tssr34831 | 3 | 16 | - | TSS region | transcription start site region 34831 | |
Tssr34832 | 3 | 5 | - | TSS region | transcription start site region 34832 | |
Tssr34833 | 3 | 7 | - | TSS region | transcription start site region 34833 | |
Aec1 | 3 | -95261604 | QTL | autoimmune exocrinopathy 1 | ||
Gm42681 | 3 | 1610 | - | antisense lncRNA gene | predicted gene 42681 | |
Sycp1 | 3 | 117601 | - | protein coding gene | synaptonemal complex protein 1 | |
Gm42816 | 3 | 324 | + | pseudogene | predicted gene 42816 | |
Gm33952 | 3 | 407 | + | pseudogene | predicted gene, 33952 | |
Gm33866 | 3 | 288 | + | pseudogene | predicted gene, 33866 | |
Tssr34834 | 3 | 14 | - | TSS region | transcription start site region 34834 | |
Tssr991 | 3 | 4 | - | TSS region | transcription start site region 991 | |
Cpgi13628 | 3 | 936 | CpG island | CpG island 13628 | ||
Tssr34835 | 3 | 14 | - | TSS region | transcription start site region 34835 | |
Nr1h5 | 3 | 24475 | - | protein coding gene | nuclear receptor subfamily 1, group H, member 5 | |
Gm22826 | 3 | 164 | - | snRNA gene | predicted gene, 22826 | |
Tssr34836 | 3 | 13 | - | TSS region | transcription start site region 34836 | |
Cpgi13629 | 3 | 796 | CpG island | CpG island 13629 | ||
Tssr30945 | 3 | 79 | + | TSS region | transcription start site region 30945 | |
Sike1 | 3 | 8174 | + | protein coding gene | suppressor of IKBKE 1 | |
Tssr30946 | 3 | 11 | + | TSS region | transcription start site region 30946 | |
Tssr30947 | 3 | 37 | + | TSS region | transcription start site region 30947 | |
Cpgi13630 | 3 | 1340 | CpG island | CpG island 13630 | ||
Tssr34837 | 3 | 12 | - | TSS region | transcription start site region 34837 | |
Csde1 | 3 | 37755 | + | protein coding gene | cold shock domain containing E1, RNA binding | |
Tssr992 | 3 | 18 | - | TSS region | transcription start site region 992 | |
Tssr30948 | 3 | 41 | + | TSS region | transcription start site region 30948 | |
Tssr34838 | 3 | 21 | - | TSS region | transcription start site region 34838 | |
Tssr30949 | 3 | 26 | + | TSS region | transcription start site region 30949 | |
Tssr34839 | 3 | 27 | - | TSS region | transcription start site region 34839 | |
Tssr30950 | 3 | 85 | + | TSS region | transcription start site region 30950 | |
Tssr30951 | 3 | 25 | + | TSS region | transcription start site region 30951 | |
Tssr30952 | 3 | 45 | + | TSS region | transcription start site region 30952 | |
Tssr30953 | 3 | 23 | + | TSS region | transcription start site region 30953 | |
Tssr30954 | 3 | 12 | + | TSS region | transcription start site region 30954 | |
Tssr30955 | 3 | 33 | + | TSS region | transcription start site region 30955 | |
Cpgi13631 | 3 | 428 | CpG island | CpG island 13631 | ||
Nras | 3 | 9629 | + | protein coding gene | neuroblastoma ras oncogene | |
Tssr30956 | 3 | 50 | + | TSS region | transcription start site region 30956 | |
Tssr30957 | 3 | 12 | + | TSS region | transcription start site region 30957 | |
Tssr30958 | 3 | 33 | + | TSS region | transcription start site region 30958 | |
Tssr30959 | 3 | 14 | + | TSS region | transcription start site region 30959 | |
Tssr30960 | 3 | 22 | + | TSS region | transcription start site region 30960 | |
Gm43062 | 3 | 1318 | + | lincRNA gene | predicted gene 43062 | |
Tssr30961 | 3 | 4 | + | TSS region | transcription start site region 30961 | |
Tssr30962 | 3 | 24 | + | TSS region | transcription start site region 30962 | |
Ampd1 | 3 | 25706 | + | protein coding gene | adenosine monophosphate deaminase 1 | |
Tssr30963 | 3 | 13 | + | TSS region | transcription start site region 30963 | |
Gm23820 | 3 | 299 | + | unclassified non-coding RNA gene | predicted gene, 23820 | |
Tssr30964 | 3 | 14 | + | TSS region | transcription start site region 30964 | |
Tssr30965 | 3 | 11 | + | TSS region | transcription start site region 30965 | |
Gm43063 | 3 | 1080 | + | sense intronic lncRNA gene | predicted gene 43063 | |
Cpgi13632 | 3 | 426 | CpG island | CpG island 13632 | ||
Cpgi13633 | 3 | 1281 | CpG island | CpG island 13633 | ||
Tssr30966 | 3 | 63 | + | TSS region | transcription start site region 30966 | |
Dennd2c | 3 | 67082 | + | protein coding gene | DENN/MADD domain containing 2C | |
Tssr30967 | 3 | 16 | + | TSS region | transcription start site region 30967 | |
Tssr30968 | 3 | 14 | + | TSS region | transcription start site region 30968 | |
Cpgi13634 | 3 | 745 | CpG island | CpG island 13634 | ||
Bcas2 | 3 | 7503 | + | protein coding gene | breast carcinoma amplified sequence 2 | |
Tssr30969 | 3 | 11 | + | TSS region | transcription start site region 30969 | |
Tssr30970 | 3 | 39 | + | TSS region | transcription start site region 30970 | |
Gm27024 | 3 | 754 | - | pseudogene | predicted gene, 27024 | |
Cpgi13635 | 3 | 212 | CpG island | CpG island 13635 | ||
Gm40113 | 3 | 7431 | - | lncRNA gene | predicted gene, 40113 | |
2410024N13Rik | 3 | 749 | - | pseudogene | RIKEN cDNA 2410024N13 gene | |
Gm43060 | 3 | 288 | - | pseudogene | predicted gene 43060 | |
Tssr30971 | 3 | 7 | + | TSS region | transcription start site region 30971 | |
Cpgi13636 | 3 | 1524 | CpG island | CpG island 13636 | ||
Trim33 | 3 | 79477 | + | protein coding gene | tripartite motif-containing 33 | |
Tssr30972 | 3 | 66 | + | TSS region | transcription start site region 30972 | |
Tssr30973 | 3 | 18 | + | TSS region | transcription start site region 30973 | |
Tssr30974 | 3 | 24 | + | TSS region | transcription start site region 30974 | |
D3Wsu106e | 3 | 249 | DNA segment | DNA segment, Chr 3, Wayne State University 106, expressed | ||
Tssr30975 | 3 | 6 | + | TSS region | transcription start site region 30975 | |
Tssr30976 | 3 | 5 | + | TSS region | transcription start site region 30976 | |
Tssr30977 | 3 | 6 | + | TSS region | transcription start site region 30977 | |
Tssr30978 | 3 | 26 | + | TSS region | transcription start site region 30978 | |
Gm43061 | 3 | 2240 | + | sense intronic lncRNA gene | predicted gene 43061 | |
Tssr30979 | 3 | 7 | + | TSS region | transcription start site region 30979 | |
Tssr34840 | 3 | 27 | - | TSS region | transcription start site region 34840 | |
Tssr30980 | 3 | 1 | + | TSS region | transcription start site region 30980 | |
Cpgi13637 | 3 | 270 | CpG island | CpG island 13637 | ||
Tssr34841 | 3 | 5 | - | TSS region | transcription start site region 34841 | |
Tssr30981 | 3 | 17 | + | TSS region | transcription start site region 30981 | |
Tssr30982 | 3 | 12 | + | TSS region | transcription start site region 30982 | |
Tssr30983 | 3 | 21 | + | TSS region | transcription start site region 30983 | |
Gm25009 | 3 | 101 | + | snoRNA gene | predicted gene, 25009 | |
Tssr34842 | 3 | 2 | - | TSS region | transcription start site region 34842 | |
Gm25869 | 3 | 106 | + | snRNA gene | predicted gene, 25869 | |
Gm25199 | 3 | 103 | - | snRNA gene | predicted gene, 25199 | |
Tssr30984 | 3 | 42 | + | TSS region | transcription start site region 30984 | |
D3Mit192 | 3 | 195 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 192 | ||
Gm34049 | 3 | 49901 | + | lncRNA gene | predicted gene, 34049 | |
Cpgi13638 | 3 | 1627 | CpG island | CpG island 13638 | ||
Tssr30985 | 3 | 17 | + | TSS region | transcription start site region 30985 | |
Syt6 | 3 | 70325 | + | protein coding gene | synaptotagmin VI | |
Tssr30986 | 3 | 11 | + | TSS region | transcription start site region 30986 | |
Tssr30987 | 3 | 14 | + | TSS region | transcription start site region 30987 | |
Gm43066 | 3 | 1259 | + | sense intronic lncRNA gene | predicted gene 43066 | |
Atg4a-ps | 3 | 2114 | - | pseudogene | autophagy related 4A, pseudogene | |
Tssr34843 | 3 | 9 | - | TSS region | transcription start site region 34843 | |
Gm25325 | 3 | 85 | - | miRNA gene | predicted gene, 25325 | |
Gm15986 | 3 | 399 | + | pseudogene | predicted gene 15986 | |
Olfml3 | 3 | 2607 | - | protein coding gene | olfactomedin-like 3 | |
Tssr34844 | 3 | 11 | - | TSS region | transcription start site region 34844 | |
Tssr34845 | 3 | 13 | - | TSS region | transcription start site region 34845 | |
Tssr30988 | 3 | 16 | + | TSS region | transcription start site region 30988 | |
Tssr34846 | 3 | 36 | - | TSS region | transcription start site region 34846 | |
Tssr34847 | 3 | 11 | - | TSS region | transcription start site region 34847 | |
Gm10964 | 3 | 7010 | + | protein coding gene | predicted gene 10964 | |
Hipk1 | 3 | 51748 | - | protein coding gene | homeodomain interacting protein kinase 1 | |
Tssr34848 | 3 | 4 | - | TSS region | transcription start site region 34848 | |
Tssr34849 | 3 | 15 | - | TSS region | transcription start site region 34849 | |
Gm43149 | 3 | 1421 | - | sense intronic lncRNA gene | predicted gene 43149 | |
Gm15886 | 3 | 6513 | + | antisense lncRNA gene | predicted gene 15886 | |
Tssr30989 | 3 | 8 | + | TSS region | transcription start site region 30989 | |
Tssr30990 | 3 | 12 | + | TSS region | transcription start site region 30990 | |
Tssr30991 | 3 | 12 | + | TSS region | transcription start site region 30991 | |
Tssr30992 | 3 | 11 | + | TSS region | transcription start site region 30992 | |
Tssr34850 | 3 | 2 | - | TSS region | transcription start site region 34850 | |
Tssr34851 | 3 | 16 | - | TSS region | transcription start site region 34851 | |
Tssr34852 | 3 | 21 | - | TSS region | transcription start site region 34852 | |
Tssr34853 | 3 | 13 | - | TSS region | transcription start site region 34853 | |
Tssr34854 | 3 | 20 | - | TSS region | transcription start site region 34854 | |
Tssr34855 | 3 | 17 | - | TSS region | transcription start site region 34855 | |
Gm43387 | 3 | 1065 | - | sense intronic lncRNA gene | predicted gene 43387 | |
Tssr30993 | 3 | 10 | + | TSS region | transcription start site region 30993 | |
Tssr30994 | 3 | 7 | + | TSS region | transcription start site region 30994 | |
Tssr30995 | 3 | 5 | + | TSS region | transcription start site region 30995 | |
Cpgi13639 | 3 | 1107 | CpG island | CpG island 13639 | ||
Tssr30996 | 3 | 11 | + | TSS region | transcription start site region 30996 | |
Tssr34856 | 3 | 96 | - | TSS region | transcription start site region 34856 | |
Tssr34857 | 3 | 23 | - | TSS region | transcription start site region 34857 | |
Tssr34858 | 3 | 26 | - | TSS region | transcription start site region 34858 | |
Tssr34859 | 3 | 33 | - | TSS region | transcription start site region 34859 | |
Tssr34860 | 3 | 15 | - | TSS region | transcription start site region 34860 | |
Tssr34861 | 3 | 24 | - | TSS region | transcription start site region 34861 | |
Tssr34862 | 3 | 17 | - | TSS region | transcription start site region 34862 | |
Tssr34863 | 3 | 11 | - | TSS region | transcription start site region 34863 | |
Dclre1b | 3 | 8782 | - | protein coding gene | DNA cross-link repair 1B | |
Tssr30997 | 3 | 8 | + | TSS region | transcription start site region 30997 | |
Gm15471 | 3 | 5310 | + | lncRNA gene | predicted gene 15471 | |
Tssr30998 | 3 | 9 | + | TSS region | transcription start site region 30998 | |
Cpgi13640 | 3 | 1178 | CpG island | CpG island 13640 | ||
Tssr34864 | 3 | 12 | - | TSS region | transcription start site region 34864 | |
Tssr34865 | 3 | 131 | - | TSS region | transcription start site region 34865 | |
Ap4b1 | 3 | 12505 | + | protein coding gene | adaptor-related protein complex AP-4, beta 1 | |
Gm43064 | 3 | 29075 | + | protein coding gene | predicted gene 43064 | |
Tssr30999 | 3 | 60 | + | TSS region | transcription start site region 30999 | |
Tssr31000 | 3 | 19 | + | TSS region | transcription start site region 31000 | |
Tssr31001 | 3 | 5 | + | TSS region | transcription start site region 31001 | |
Bcl2l15 | 3 | 22017 | + | protein coding gene | BCLl2-like 15 | |
Tssr31002 | 3 | 32 | + | TSS region | transcription start site region 31002 | |
Tssr31003 | 3 | 99 | + | TSS region | transcription start site region 31003 | |
Tssr31004 | 3 | 6 | + | TSS region | transcription start site region 31004 | |
Tssr31005 | 3 | 11 | + | TSS region | transcription start site region 31005 | |
Tssr31006 | 3 | 11 | + | TSS region | transcription start site region 31006 | |
D3Mit284 | 3 | 117 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 284 | ||
Tssr31007 | 3 | 11 | + | TSS region | transcription start site region 31007 | |
Tssr31008 | 3 | 20 | + | TSS region | transcription start site region 31008 | |
Tssr31009 | 3 | 8 | + | TSS region | transcription start site region 31009 | |
Tssr31010 | 3 | 8 | + | TSS region | transcription start site region 31010 | |
Tssr31011 | 3 | 7 | + | TSS region | transcription start site region 31011 |