Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:102275233-103575247

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
A230001M10Rik 3 102262405 to 102288771 26366 + lincRNA gene RIKEN cDNA A230001M10 gene
D3Mit248 3 102300376 to 102300523 147 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 248
Tssr30927 3 102332226 to 102332228 2 + TSS region transcription start site region 30927
Gm43242 3 102369162 to 102370937 1775 + lincRNA gene predicted gene 43242
Gm40110 3 102371350 to 102373128 1778 - lncRNA gene predicted gene, 40110
Gm33679 3 102377092 to 102383533 6441 - lncRNA gene predicted gene, 33679
Gm43245 3 102389540 to 102390007 467 - pseudogene predicted gene 43245
Tssr30928 3 102469635 to 102469643 8 + TSS region transcription start site region 30928
Cpgi13626 3 102469784 to 102470600 816 CpG island CpG island 13626
Tssr30929 3 102469898 to 102469912 14 + TSS region transcription start site region 30929
Tssr30930 3 102469918 to 102469932 14 + TSS region transcription start site region 30930
Ngf 3 102469919 to 102521013 51094 + protein coding gene nerve growth factor
Tssr30931 3 102491337 to 102491344 7 + TSS region transcription start site region 30931
Gm42679 3 102491342 to 102494247 2905 + sense intronic lncRNA gene predicted gene 42679
Gm46818 3 102500863 to 102506716 5853 - lncRNA gene predicted gene, 46818
Tssr30932 3 102506619 to 102506635 16 + TSS region transcription start site region 30932
Tssr30933 3 102513982 to 102513994 12 + TSS region transcription start site region 30933
Tssr30934 3 102520255 to 102520263 8 + TSS region transcription start site region 30934
Tssr30935 3 102520354 to 102520403 49 + TSS region transcription start site region 30935
Gm42678 3 102599373 to 102601593 2220 + lincRNA gene predicted gene 42678
Gm19202 3 102685910 to 102686717 807 - pseudogene predicted gene, 19202
Gm42677 3 102686735 to 102686861 126 - pseudogene predicted gene 42677
Gm40112 3 102694116 to 102696852 2736 + lncRNA gene predicted gene, 40112
Gm42682 3 102714252 to 102715516 1264 + lincRNA gene predicted gene 42682
Tspan2os 3 102720231 to 102735417 15186 - antisense lncRNA gene tetraspanin 2, opposite strand
Tssr30936 3 102724450 to 102724494 44 + TSS region transcription start site region 30936
Tssr30937 3 102725117 to 102725140 23 + TSS region transcription start site region 30937
Cpgi13627 3 102734305 to 102735528 1223 CpG island CpG island 13627
Tssr30938 3 102734496 to 102734530 34 + TSS region transcription start site region 30938
Tspan2 3 102734770 to 102772310 37540 + protein coding gene tetraspanin 2
Tssr30939 3 102734903 to 102734952 49 + TSS region transcription start site region 30939
Tssr30940 3 102734956 to 102734977 21 + TSS region transcription start site region 30940
Tssr30941 3 102735202 to 102735236 34 + TSS region transcription start site region 30941
Tssr30942 3 102748180 to 102748184 4 + TSS region transcription start site region 30942
Tssr30943 3 102760895 to 102760906 11 + TSS region transcription start site region 30943
Tssr30944 3 102775104 to 102775111 7 + TSS region transcription start site region 30944
Tshb 3 102775465 to 102782718 7253 - protein coding gene thyroid stimulating hormone, beta subunit
Tssr34831 3 102778326 to 102778342 16 - TSS region transcription start site region 34831
Tssr34832 3 102782670 to 102782675 5 - TSS region transcription start site region 34832
Tssr34833 3 102782708 to 102782715 7 - TSS region transcription start site region 34833
Aec1 3 102782718 to 7521114 -95261604 QTL autoimmune exocrinopathy 1
Gm42681 3 102783179 to 102784789 1610 - antisense lncRNA gene predicted gene 42681
Sycp1 3 102818499 to 102936100 117601 - protein coding gene synaptonemal complex protein 1
Gm42816 3 102830494 to 102830818 324 + pseudogene predicted gene 42816
Gm33952 3 102831590 to 102831997 407 + pseudogene predicted gene, 33952
Gm33866 3 102880780 to 102881068 288 + pseudogene predicted gene, 33866
Tssr34834 3 102925233 to 102925247 14 - TSS region transcription start site region 34834
Tssr991 3 102935252 to 102935256 4 - TSS region transcription start site region 991
Cpgi13628 3 102935314 to 102936250 936 CpG island CpG island 13628
Tssr34835 3 102936093 to 102936107 14 - TSS region transcription start site region 34835
Nr1h5 3 102939658 to 102964133 24475 - protein coding gene nuclear receptor subfamily 1, group H, member 5
Gm22826 3 102951949 to 102952113 164 - snRNA gene predicted gene, 22826
Tssr34836 3 102964124 to 102964137 13 - TSS region transcription start site region 34836
Cpgi13629 3 102995544 to 102996340 796 CpG island CpG island 13629
Tssr30945 3 102995709 to 102995788 79 + TSS region transcription start site region 30945
Sike1 3 102995740 to 103003914 8174 + protein coding gene suppressor of IKBKE 1
Tssr30946 3 102995799 to 102995810 11 + TSS region transcription start site region 30946
Tssr30947 3 102996123 to 102996160 37 + TSS region transcription start site region 30947
Cpgi13630 3 103020189 to 103021529 1340 CpG island CpG island 13630
Tssr34837 3 103020335 to 103020347 12 - TSS region transcription start site region 34837
Csde1 3 103020431 to 103058186 37755 + protein coding gene cold shock domain containing E1, RNA binding
Tssr992 3 103020451 to 103020469 18 - TSS region transcription start site region 992
Tssr30948 3 103020594 to 103020635 41 + TSS region transcription start site region 30948
Tssr34838 3 103020932 to 103020953 21 - TSS region transcription start site region 34838
Tssr30949 3 103028842 to 103028868 26 + TSS region transcription start site region 30949
Tssr34839 3 103028892 to 103028919 27 - TSS region transcription start site region 34839
Tssr30950 3 103028983 to 103029068 85 + TSS region transcription start site region 30950
Tssr30951 3 103029105 to 103029130 25 + TSS region transcription start site region 30951
Tssr30952 3 103030132 to 103030177 45 + TSS region transcription start site region 30952
Tssr30953 3 103043623 to 103043646 23 + TSS region transcription start site region 30953
Tssr30954 3 103049655 to 103049667 12 + TSS region transcription start site region 30954
Tssr30955 3 103056974 to 103057007 33 + TSS region transcription start site region 30955
Cpgi13631 3 103058234 to 103058662 428 CpG island CpG island 13631
Nras 3 103058285 to 103067914 9629 + protein coding gene neuroblastoma ras oncogene
Tssr30956 3 103058302 to 103058352 50 + TSS region transcription start site region 30956
Tssr30957 3 103058353 to 103058365 12 + TSS region transcription start site region 30957
Tssr30958 3 103058709 to 103058742 33 + TSS region transcription start site region 30958
Tssr30959 3 103065043 to 103065057 14 + TSS region transcription start site region 30959
Tssr30960 3 103065372 to 103065394 22 + TSS region transcription start site region 30960
Gm43062 3 103071174 to 103072492 1318 + lincRNA gene predicted gene 43062
Tssr30961 3 103071195 to 103071199 4 + TSS region transcription start site region 30961
Tssr30962 3 103074009 to 103074033 24 + TSS region transcription start site region 30962
Ampd1 3 103074014 to 103099720 25706 + protein coding gene adenosine monophosphate deaminase 1
Tssr30963 3 103074035 to 103074048 13 + TSS region transcription start site region 30963
Gm23820 3 103082876 to 103083175 299 + unclassified non-coding RNA gene predicted gene, 23820
Tssr30964 3 103090183 to 103090197 14 + TSS region transcription start site region 30964
Tssr30965 3 103090230 to 103090241 11 + TSS region transcription start site region 30965
Gm43063 3 103096746 to 103097826 1080 + sense intronic lncRNA gene predicted gene 43063
Cpgi13632 3 103098652 to 103099078 426 CpG island CpG island 13632
Cpgi13633 3 103102029 to 103103310 1281 CpG island CpG island 13633
Tssr30966 3 103102648 to 103102711 63 + TSS region transcription start site region 30966
Dennd2c 3 103102656 to 103169738 67082 + protein coding gene DENN/MADD domain containing 2C
Tssr30967 3 103127390 to 103127406 16 + TSS region transcription start site region 30967
Tssr30968 3 103127527 to 103127541 14 + TSS region transcription start site region 30968
Cpgi13634 3 103171569 to 103172314 745 CpG island CpG island 13634
Bcas2 3 103171660 to 103179163 7503 + protein coding gene breast carcinoma amplified sequence 2
Tssr30969 3 103171714 to 103171725 11 + TSS region transcription start site region 30969
Tssr30970 3 103171728 to 103171767 39 + TSS region transcription start site region 30970
Gm27024 3 103179689 to 103180443 754 - pseudogene predicted gene, 27024
Cpgi13635 3 103182931 to 103183143 212 CpG island CpG island 13635
Gm40113 3 103189293 to 103196724 7431 - lncRNA gene predicted gene, 40113
2410024N13Rik 3 103198226 to 103198975 749 - pseudogene RIKEN cDNA 2410024N13 gene
Gm43060 3 103246975 to 103247263 288 - pseudogene predicted gene 43060
Tssr30971 3 103263060 to 103263067 7 + TSS region transcription start site region 30971
Cpgi13636 3 103279194 to 103280718 1524 CpG island CpG island 13636
Trim33 3 103279293 to 103358770 79477 + protein coding gene tripartite motif-containing 33
Tssr30972 3 103279714 to 103279780 66 + TSS region transcription start site region 30972
Tssr30973 3 103279781 to 103279799 18 + TSS region transcription start site region 30973
Tssr30974 3 103279849 to 103279873 24 + TSS region transcription start site region 30974
D3Wsu106e 3 103296015 to 103296264 249 DNA segment DNA segment, Chr 3, Wayne State University 106, expressed
Tssr30975 3 103309761 to 103309767 6 + TSS region transcription start site region 30975
Tssr30976 3 103321898 to 103321903 5 + TSS region transcription start site region 30976
Tssr30977 3 103325414 to 103325420 6 + TSS region transcription start site region 30977
Tssr30978 3 103329105 to 103329131 26 + TSS region transcription start site region 30978
Gm43061 3 103332143 to 103334383 2240 + sense intronic lncRNA gene predicted gene 43061
Tssr30979 3 103356809 to 103356816 7 + TSS region transcription start site region 30979
Tssr34840 3 103364239 to 103364266 27 - TSS region transcription start site region 34840
Tssr30980 3 103373764 to 103373765 1 + TSS region transcription start site region 30980
Cpgi13637 3 103383230 to 103383500 270 CpG island CpG island 13637
Tssr34841 3 103384979 to 103384984 5 - TSS region transcription start site region 34841
Tssr30981 3 103385174 to 103385191 17 + TSS region transcription start site region 30981
Tssr30982 3 103386879 to 103386891 12 + TSS region transcription start site region 30982
Tssr30983 3 103386983 to 103387004 21 + TSS region transcription start site region 30983
Gm25009 3 103392933 to 103393034 101 + snoRNA gene predicted gene, 25009
Tssr34842 3 103414617 to 103414619 2 - TSS region transcription start site region 34842
Gm25869 3 103427437 to 103427543 106 + snRNA gene predicted gene, 25869
Gm25199 3 103445697 to 103445800 103 - snRNA gene predicted gene, 25199
Tssr30984 3 103484713 to 103484755 42 + TSS region transcription start site region 30984
D3Mit192 3 103488927 to 103489122 195 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 192
Gm34049 3 103501465 to 103551366 49901 + lncRNA gene predicted gene, 34049
Cpgi13638 3 103575128 to 103576755 1627 CpG island CpG island 13638
Tssr30985 3 103575238 to 103575255 17 + TSS region transcription start site region 30985
Syt6 3 103575242 to 103645567 70325 + protein coding gene synaptotagmin VI