Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:102000917-102330946

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nhlh2 3 102010110 to 102015492 5382 + protein coding gene nescient helix loop helix 2
Tssr30911 3 102010114 to 102010123 9 + TSS region transcription start site region 30911
Tssr30912 3 102010138 to 102010171 33 + TSS region transcription start site region 30912
Cpgi13623 3 102011565 to 102013265 1700 CpG island CpG island 13623
Tssr30913 3 102012291 to 102012302 11 + TSS region transcription start site region 30913
Tssr30914 3 102012349 to 102012367 18 + TSS region transcription start site region 30914
Tssr30915 3 102012401 to 102012425 24 + TSS region transcription start site region 30915
Tssr30916 3 102012430 to 102012441 11 + TSS region transcription start site region 30916
Tssr30917 3 102012442 to 102012456 14 + TSS region transcription start site region 30917
Tssr30918 3 102012497 to 102012507 10 + TSS region transcription start site region 30918
Cpgi13624 3 102023373 to 102023950 577 CpG island CpG island 13624
D3Mit77 3 102023842 to 102023991 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 77
Gm43243 3 102068050 to 102068327 277 + pseudogene predicted gene 43243
Gm18894 3 102074519 to 102075143 624 + pseudogene predicted gene, 18894
Tssr30919 3 102085917 to 102085936 19 + TSS region transcription start site region 30919
Casq2 3 102086420 to 102146514 60094 + protein coding gene calsequestrin 2
Tssr30920 3 102086436 to 102086447 11 + TSS region transcription start site region 30920
Tssr30921 3 102086471 to 102086524 53 + TSS region transcription start site region 30921
Gm43244 3 102129938 to 102131222 1284 + sense intronic lncRNA gene predicted gene 43244
4632404M16Rik 3 102134615 to 102137496 2881 + sense intronic lncRNA gene RIKEN cDNA 4632404M16 gene
Tssr30922 3 102144164 to 102144175 11 + TSS region transcription start site region 30922
Vangl1 3 102153583 to 102204693 51110 - protein coding gene VANGL planar cell polarity 1
Tssr34819 3 102165561 to 102165577 16 - TSS region transcription start site region 34819
Tssr34820 3 102165894 to 102165909 15 - TSS region transcription start site region 34820
Tssr34821 3 102165917 to 102165946 29 - TSS region transcription start site region 34821
Tssr34822 3 102166387 to 102166408 21 - TSS region transcription start site region 34822
Tssr34823 3 102166435 to 102166448 13 - TSS region transcription start site region 34823
Tssr34824 3 102166969 to 102167006 37 - TSS region transcription start site region 34824
Tssr34825 3 102167021 to 102167037 16 - TSS region transcription start site region 34825
Tssr34826 3 102167547 to 102167572 25 - TSS region transcription start site region 34826
Tssr34827 3 102167631 to 102167659 28 - TSS region transcription start site region 34827
Tssr34828 3 102167671 to 102167695 24 - TSS region transcription start site region 34828
Tssr34829 3 102167696 to 102167726 30 - TSS region transcription start site region 34829
Tssr30923 3 102167842 to 102167853 11 + TSS region transcription start site region 30923
Cpgi13625 3 102203609 to 102205013 1404 CpG island CpG island 13625
Gm16160 3 102203956 to 102206266 2310 + antisense lncRNA gene predicted gene 16160
Tssr34830 3 102204576 to 102204647 71 - TSS region transcription start site region 34830
Gm43241 3 102249669 to 102250265 596 + lincRNA gene predicted gene 43241
Tssr30924 3 102262392 to 102262446 54 + TSS region transcription start site region 30924
A230001M10Rik 3 102262405 to 102288771 26366 + lincRNA gene RIKEN cDNA A230001M10 gene
Tssr30925 3 102262449 to 102262460 11 + TSS region transcription start site region 30925
Tssr30926 3 102262516 to 102262527 11 + TSS region transcription start site region 30926
D3Mit248 3 102300376 to 102300523 147 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 248