Gene symbol |
Chromo- some |
Coordinates (bp, mm10) |
Size (bp) |
Strand |
Feature Type |
Gene name |
---|---|---|---|---|---|---|
Cia5b | 3 | 3089595 | QTL | collagen induced arthritis QTL 5b | ||
Gm40109 | 3 | 5919 | - | lncRNA gene | predicted gene, 40109 | |
Gm33162 | 3 | 24695 | - | lncRNA gene | predicted gene, 33162 | |
Tssr30906 | 3 | 10 | + | TSS region | transcription start site region 30906 | |
Tssr34790 | 3 | 11 | - | TSS region | transcription start site region 34790 | |
Tssr34791 | 3 | 1 | - | TSS region | transcription start site region 34791 | |
Atp1a1 | 3 | 28465 | - | protein coding gene | ATPase, Na+/K+ transporting, alpha 1 polypeptide | |
Tssr34792 | 3 | 14 | - | TSS region | transcription start site region 34792 | |
Gm42937 | 3 | 751 | - | sense intronic lncRNA gene | predicted gene 42937 | |
Tssr34793 | 3 | 27 | - | TSS region | transcription start site region 34793 | |
Tssr34794 | 3 | 19 | - | TSS region | transcription start site region 34794 | |
Tssr34795 | 3 | 21 | - | TSS region | transcription start site region 34795 | |
Tssr30907 | 3 | 27 | + | TSS region | transcription start site region 30907 | |
Tssr34796 | 3 | 12 | - | TSS region | transcription start site region 34796 | |
Tssr34797 | 3 | 15 | - | TSS region | transcription start site region 34797 | |
Tssr34798 | 3 | 11 | - | TSS region | transcription start site region 34798 | |
Tssr34799 | 3 | 41 | - | TSS region | transcription start site region 34799 | |
Tssr34800 | 3 | 11 | - | TSS region | transcription start site region 34800 | |
Tssr34801 | 3 | 27 | - | TSS region | transcription start site region 34801 | |
Gm42941 | 3 | 1320 | - | sense intronic lncRNA gene | predicted gene 42941 | |
Tssr30908 | 3 | 22 | + | TSS region | transcription start site region 30908 | |
Cpgi13620 | 3 | 1342 | CpG island | CpG island 13620 | ||
Tssr989 | 3 | 25 | + | TSS region | transcription start site region 989 | |
Tssr34802 | 3 | 13 | - | TSS region | transcription start site region 34802 | |
Tssr34803 | 3 | 49 | - | TSS region | transcription start site region 34803 | |
Tssr34804 | 3 | 5 | - | TSS region | transcription start site region 34804 | |
Tssr34805 | 3 | 34 | - | TSS region | transcription start site region 34805 | |
Tssr34806 | 3 | 22 | - | TSS region | transcription start site region 34806 | |
Tssr34807 | 3 | 22 | - | TSS region | transcription start site region 34807 | |
Tssr990 | 3 | 3 | + | TSS region | transcription start site region 990 | |
Gm33215 | 3 | 16748 | - | lncRNA gene | predicted gene, 33215 | |
Tssr30909 | 3 | 2 | + | TSS region | transcription start site region 30909 | |
Gm33265 | 3 | 8214 | - | lncRNA gene | predicted gene, 33265 | |
Tssr30910 | 3 | 23 | + | TSS region | transcription start site region 30910 | |
Gm43135 | 3 | 7843 | + | lincRNA gene | predicted gene 43135 | |
Gm33309 | 3 | 10404 | - | lncRNA gene | predicted gene, 33309 | |
D3Mit191 | 3 | 148 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 191 | ||
Gm43134 | 3 | 1885 | + | lincRNA gene | predicted gene 43134 | |
Cpgi13621 | 3 | 173 | CpG island | CpG island 13621 | ||
Mab21l3 | 3 | 23650 | - | protein coding gene | mab-21-like 3 | |
Gm33381 | 3 | 8106 | + | lncRNA gene | predicted gene, 33381 | |
Tssr34808 | 3 | 31 | - | TSS region | transcription start site region 34808 | |
Tssr34809 | 3 | 29 | - | TSS region | transcription start site region 34809 | |
Tssr34810 | 3 | 10 | - | TSS region | transcription start site region 34810 | |
Slc22a15 | 3 | 68677 | - | protein coding gene | solute carrier family 22 (organic anion/cation transporter), member 15 | |
Cpgi13622 | 3 | 1051 | CpG island | CpG island 13622 | ||
Tssr34811 | 3 | 19 | - | TSS region | transcription start site region 34811 | |
Tssr34812 | 3 | 19 | - | TSS region | transcription start site region 34812 | |
Tssr34813 | 3 | 30 | - | TSS region | transcription start site region 34813 | |
Tssr34814 | 3 | 34 | - | TSS region | transcription start site region 34814 | |
Tssr34815 | 3 | 24 | - | TSS region | transcription start site region 34815 | |
Tssr34816 | 3 | 12 | - | TSS region | transcription start site region 34816 | |
Tssr34817 | 3 | 21 | - | TSS region | transcription start site region 34817 | |
Tssr34818 | 3 | 11 | - | TSS region | transcription start site region 34818 | |
D3Mit102 | 3 | 149 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 102 | ||
Cq3 | 3 | 149 | QTL | cholesterol QTL 3 | ||
Nhlh2 | 3 | 5382 | + | protein coding gene | nescient helix loop helix 2 | |
Tssr30911 | 3 | 9 | + | TSS region | transcription start site region 30911 | |
Tssr30912 | 3 | 33 | + | TSS region | transcription start site region 30912 | |
Cpgi13623 | 3 | 1700 | CpG island | CpG island 13623 | ||
Tssr30913 | 3 | 11 | + | TSS region | transcription start site region 30913 | |
Tssr30914 | 3 | 18 | + | TSS region | transcription start site region 30914 | |
Tssr30915 | 3 | 24 | + | TSS region | transcription start site region 30915 | |
Tssr30916 | 3 | 11 | + | TSS region | transcription start site region 30916 | |
Tssr30917 | 3 | 14 | + | TSS region | transcription start site region 30917 | |
Tssr30918 | 3 | 10 | + | TSS region | transcription start site region 30918 | |
Cpgi13624 | 3 | 577 | CpG island | CpG island 13624 | ||
D3Mit77 | 3 | 149 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 77 | ||
Gm43243 | 3 | 277 | + | pseudogene | predicted gene 43243 | |
Gm18894 | 3 | 624 | + | pseudogene | predicted gene, 18894 | |
Tssr30919 | 3 | 19 | + | TSS region | transcription start site region 30919 | |
Casq2 | 3 | 60094 | + | protein coding gene | calsequestrin 2 | |
Tssr30920 | 3 | 11 | + | TSS region | transcription start site region 30920 | |
Tssr30921 | 3 | 53 | + | TSS region | transcription start site region 30921 | |
Gm43244 | 3 | 1284 | + | sense intronic lncRNA gene | predicted gene 43244 | |
4632404M16Rik | 3 | 2881 | + | sense intronic lncRNA gene | RIKEN cDNA 4632404M16 gene | |
Tssr30922 | 3 | 11 | + | TSS region | transcription start site region 30922 | |
Vangl1 | 3 | 51110 | - | protein coding gene | VANGL planar cell polarity 1 | |
Tssr34819 | 3 | 16 | - | TSS region | transcription start site region 34819 | |
Tssr34820 | 3 | 15 | - | TSS region | transcription start site region 34820 | |
Tssr34821 | 3 | 29 | - | TSS region | transcription start site region 34821 | |
Tssr34822 | 3 | 21 | - | TSS region | transcription start site region 34822 | |
Tssr34823 | 3 | 13 | - | TSS region | transcription start site region 34823 | |
Tssr34824 | 3 | 37 | - | TSS region | transcription start site region 34824 | |
Tssr34825 | 3 | 16 | - | TSS region | transcription start site region 34825 | |
Tssr34826 | 3 | 25 | - | TSS region | transcription start site region 34826 | |
Tssr34827 | 3 | 28 | - | TSS region | transcription start site region 34827 | |
Tssr34828 | 3 | 24 | - | TSS region | transcription start site region 34828 | |
Tssr34829 | 3 | 30 | - | TSS region | transcription start site region 34829 | |
Tssr30923 | 3 | 11 | + | TSS region | transcription start site region 30923 | |
Cpgi13625 | 3 | 1404 | CpG island | CpG island 13625 | ||
Gm16160 | 3 | 2310 | + | antisense lncRNA gene | predicted gene 16160 | |
Tssr34830 | 3 | 71 | - | TSS region | transcription start site region 34830 | |
Gm43241 | 3 | 596 | + | lincRNA gene | predicted gene 43241 | |
Tssr30924 | 3 | 54 | + | TSS region | transcription start site region 30924 | |
A230001M10Rik | 3 | 26366 | + | lincRNA gene | RIKEN cDNA A230001M10 gene | |
Tssr30925 | 3 | 11 | + | TSS region | transcription start site region 30925 | |
Tssr30926 | 3 | 11 | + | TSS region | transcription start site region 30926 | |
D3Mit248 | 3 | 147 | DNA segment | DNA segment, Chr 3, Massachusetts Institute of Technology 248 | ||
Tssr30927 | 3 | 2 | + | TSS region | transcription start site region 30927 | |
Gm43242 | 3 | 1775 | + | lincRNA gene | predicted gene 43242 | |
Gm40110 | 3 | 1778 | - | lncRNA gene | predicted gene, 40110 | |
Gm33679 | 3 | 6441 | - | lncRNA gene | predicted gene, 33679 | |
Gm43245 | 3 | 467 | - | pseudogene | predicted gene 43245 | |
Tssr30928 | 3 | 8 | + | TSS region | transcription start site region 30928 | |
Cpgi13626 | 3 | 816 | CpG island | CpG island 13626 | ||
Tssr30929 | 3 | 14 | + | TSS region | transcription start site region 30929 | |
Tssr30930 | 3 | 14 | + | TSS region | transcription start site region 30930 | |
Ngf | 3 | 51094 | + | protein coding gene | nerve growth factor | |
Tssr30931 | 3 | 7 | + | TSS region | transcription start site region 30931 | |
Gm42679 | 3 | 2905 | + | sense intronic lncRNA gene | predicted gene 42679 | |
Gm46818 | 3 | 5853 | - | lncRNA gene | predicted gene, 46818 | |
Tssr30932 | 3 | 16 | + | TSS region | transcription start site region 30932 | |
Tssr30933 | 3 | 12 | + | TSS region | transcription start site region 30933 | |
Tssr30934 | 3 | 8 | + | TSS region | transcription start site region 30934 | |
Tssr30935 | 3 | 49 | + | TSS region | transcription start site region 30935 | |
Gm42678 | 3 | 2220 | + | lincRNA gene | predicted gene 42678 | |
Gm19202 | 3 | 807 | - | pseudogene | predicted gene, 19202 | |
Gm42677 | 3 | 126 | - | pseudogene | predicted gene 42677 | |
Gm40112 | 3 | 2736 | + | lncRNA gene | predicted gene, 40112 | |
Gm42682 | 3 | 1264 | + | lincRNA gene | predicted gene 42682 | |
Tspan2os | 3 | 15186 | - | antisense lncRNA gene | tetraspanin 2, opposite strand | |
Tssr30936 | 3 | 44 | + | TSS region | transcription start site region 30936 | |
Tssr30937 | 3 | 23 | + | TSS region | transcription start site region 30937 | |
Cpgi13627 | 3 | 1223 | CpG island | CpG island 13627 | ||
Tssr30938 | 3 | 34 | + | TSS region | transcription start site region 30938 | |
Tspan2 | 3 | 37540 | + | protein coding gene | tetraspanin 2 | |
Tssr30939 | 3 | 49 | + | TSS region | transcription start site region 30939 | |
Tssr30940 | 3 | 21 | + | TSS region | transcription start site region 30940 | |
Tssr30941 | 3 | 34 | + | TSS region | transcription start site region 30941 | |
Tssr30942 | 3 | 4 | + | TSS region | transcription start site region 30942 | |
Tssr30943 | 3 | 11 | + | TSS region | transcription start site region 30943 | |
Tssr30944 | 3 | 7 | + | TSS region | transcription start site region 30944 | |
Tshb | 3 | 7253 | - | protein coding gene | thyroid stimulating hormone, beta subunit | |
Tssr34831 | 3 | 16 | - | TSS region | transcription start site region 34831 | |
Tssr34832 | 3 | 5 | - | TSS region | transcription start site region 34832 | |
Tssr34833 | 3 | 7 | - | TSS region | transcription start site region 34833 | |
Aec1 | 3 | -95261604 | QTL | autoimmune exocrinopathy 1 | ||
Gm42681 | 3 | 1610 | - | antisense lncRNA gene | predicted gene 42681 | |
Sycp1 | 3 | 117601 | - | protein coding gene | synaptonemal complex protein 1 | |
Gm42816 | 3 | 324 | + | pseudogene | predicted gene 42816 | |
Gm33952 | 3 | 407 | + | pseudogene | predicted gene, 33952 | |
Gm33866 | 3 | 288 | + | pseudogene | predicted gene, 33866 | |
Tssr34834 | 3 | 14 | - | TSS region | transcription start site region 34834 | |
Tssr991 | 3 | 4 | - | TSS region | transcription start site region 991 | |
Cpgi13628 | 3 | 936 | CpG island | CpG island 13628 | ||
Tssr34835 | 3 | 14 | - | TSS region | transcription start site region 34835 | |
Nr1h5 | 3 | 24475 | - | protein coding gene | nuclear receptor subfamily 1, group H, member 5 | |
Gm22826 | 3 | 164 | - | snRNA gene | predicted gene, 22826 | |
Tssr34836 | 3 | 13 | - | TSS region | transcription start site region 34836 | |
Cpgi13629 | 3 | 796 | CpG island | CpG island 13629 | ||
Tssr30945 | 3 | 79 | + | TSS region | transcription start site region 30945 | |
Sike1 | 3 | 8174 | + | protein coding gene | suppressor of IKBKE 1 | |
Tssr30946 | 3 | 11 | + | TSS region | transcription start site region 30946 | |
Tssr30947 | 3 | 37 | + | TSS region | transcription start site region 30947 | |
Cpgi13630 | 3 | 1340 | CpG island | CpG island 13630 | ||
Tssr34837 | 3 | 12 | - | TSS region | transcription start site region 34837 | |
Csde1 | 3 | 37755 | + | protein coding gene | cold shock domain containing E1, RNA binding | |
Tssr992 | 3 | 18 | - | TSS region | transcription start site region 992 | |
Tssr30948 | 3 | 41 | + | TSS region | transcription start site region 30948 | |
Tssr34838 | 3 | 21 | - | TSS region | transcription start site region 34838 | |
Tssr30949 | 3 | 26 | + | TSS region | transcription start site region 30949 | |
Tssr34839 | 3 | 27 | - | TSS region | transcription start site region 34839 | |
Tssr30950 | 3 | 85 | + | TSS region | transcription start site region 30950 | |
Tssr30951 | 3 | 25 | + | TSS region | transcription start site region 30951 | |
Tssr30952 | 3 | 45 | + | TSS region | transcription start site region 30952 | |
Tssr30953 | 3 | 23 | + | TSS region | transcription start site region 30953 | |
Tssr30954 | 3 | 12 | + | TSS region | transcription start site region 30954 | |
Tssr30955 | 3 | 33 | + | TSS region | transcription start site region 30955 | |
Cpgi13631 | 3 | 428 | CpG island | CpG island 13631 | ||
Nras | 3 | 9629 | + | protein coding gene | neuroblastoma ras oncogene | |
Tssr30956 | 3 | 50 | + | TSS region | transcription start site region 30956 | |
Tssr30957 | 3 | 12 | + | TSS region | transcription start site region 30957 | |
Tssr30958 | 3 | 33 | + | TSS region | transcription start site region 30958 | |
Tssr30959 | 3 | 14 | + | TSS region | transcription start site region 30959 | |
Tssr30960 | 3 | 22 | + | TSS region | transcription start site region 30960 | |
Gm43062 | 3 | 1318 | + | lincRNA gene | predicted gene 43062 | |
Tssr30961 | 3 | 4 | + | TSS region | transcription start site region 30961 | |
Tssr30962 | 3 | 24 | + | TSS region | transcription start site region 30962 | |
Ampd1 | 3 | 25706 | + | protein coding gene | adenosine monophosphate deaminase 1 | |
Tssr30963 | 3 | 13 | + | TSS region | transcription start site region 30963 | |
Gm23820 | 3 | 299 | + | unclassified non-coding RNA gene | predicted gene, 23820 | |
Tssr30964 | 3 | 14 | + | TSS region | transcription start site region 30964 | |
Tssr30965 | 3 | 11 | + | TSS region | transcription start site region 30965 | |
Gm43063 | 3 | 1080 | + | sense intronic lncRNA gene | predicted gene 43063 | |
Cpgi13632 | 3 | 426 | CpG island | CpG island 13632 | ||
Cpgi13633 | 3 | 1281 | CpG island | CpG island 13633 | ||
Tssr30966 | 3 | 63 | + | TSS region | transcription start site region 30966 | |
Dennd2c | 3 | 67082 | + | protein coding gene | DENN/MADD domain containing 2C | |
Tssr30967 | 3 | 16 | + | TSS region | transcription start site region 30967 | |
Tssr30968 | 3 | 14 | + | TSS region | transcription start site region 30968 | |
Cpgi13634 | 3 | 745 | CpG island | CpG island 13634 | ||
Bcas2 | 3 | 7503 | + | protein coding gene | breast carcinoma amplified sequence 2 | |
Tssr30969 | 3 | 11 | + | TSS region | transcription start site region 30969 | |
Tssr30970 | 3 | 39 | + | TSS region | transcription start site region 30970 | |
Gm27024 | 3 | 754 | - | pseudogene | predicted gene, 27024 | |
Cpgi13635 | 3 | 212 | CpG island | CpG island 13635 | ||
Gm40113 | 3 | 7431 | - | lncRNA gene | predicted gene, 40113 | |
2410024N13Rik | 3 | 749 | - | pseudogene | RIKEN cDNA 2410024N13 gene | |
Gm43060 | 3 | 288 | - | pseudogene | predicted gene 43060 |