Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:101308583-103049693

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185 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr30900 3 101310451 to 101310466 15 + TSS region transcription start site region 30900
Gm43467 3 101310846 to 101311282 436 + pseudogene predicted gene 43467
Gm32848 3 101315914 to 101321293 5379 + lncRNA gene predicted gene, 32848
Gm32900 3 101339626 to 101354606 14980 - lncRNA gene predicted gene, 32900
Cpgi13619 3 101376497 to 101377974 1477 CpG island CpG island 13619
Tssr30901 3 101376990 to 101377023 33 + TSS region transcription start site region 30901
Tssr30902 3 101377074 to 101377158 84 + TSS region transcription start site region 30902
Igsf3 3 101377114 to 101463060 85946 + protein coding gene immunoglobulin superfamily, member 3
D3Mit312 3 101400619 to 101400741 122 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 312
Gm42939 3 101407793 to 101409997 2204 + sense intronic lncRNA gene predicted gene 42939
Gm42938 3 101411539 to 101412610 1071 + sense intronic lncRNA gene predicted gene 42938
Tssr987 3 101424122 to 101424125 3 + TSS region transcription start site region 987
Gm42538 3 101424615 to 101426936 2321 - antisense lncRNA gene predicted gene 42538
Tssr34789 3 101426958 to 101426975 17 - TSS region transcription start site region 34789
Tssr30903 3 101427027 to 101427075 48 + TSS region transcription start site region 30903
Tssr988 3 101428846 to 101428850 4 + TSS region transcription start site region 988
Tssr30904 3 101460614 to 101460624 10 + TSS region transcription start site region 30904
Tssr30905 3 101462069 to 101462092 23 + TSS region transcription start site region 30905
Gm40109 3 101501927 to 101507846 5919 - lncRNA gene predicted gene, 40109
Gm33162 3 101511555 to 101536250 24695 - lncRNA gene predicted gene, 33162
Tssr30906 3 101527046 to 101527056 10 + TSS region transcription start site region 30906
Tssr34790 3 101536435 to 101536446 11 - TSS region transcription start site region 34790
Tssr34791 3 101538940 to 101538941 1 - TSS region transcription start site region 34791
Atp1a1 3 101576219 to 101604684 28465 - protein coding gene ATPase, Na+/K+ transporting, alpha 1 polypeptide
Tssr34792 3 101576362 to 101576376 14 - TSS region transcription start site region 34792
Gm42937 3 101580304 to 101581055 751 - sense intronic lncRNA gene predicted gene 42937
Tssr34793 3 101582076 to 101582103 27 - TSS region transcription start site region 34793
Tssr34794 3 101582133 to 101582152 19 - TSS region transcription start site region 34794
Tssr34795 3 101583812 to 101583833 21 - TSS region transcription start site region 34795
Tssr30907 3 101586244 to 101586271 27 + TSS region transcription start site region 30907
Tssr34796 3 101592435 to 101592447 12 - TSS region transcription start site region 34796
Tssr34797 3 101592458 to 101592473 15 - TSS region transcription start site region 34797
Tssr34798 3 101592488 to 101592499 11 - TSS region transcription start site region 34798
Tssr34799 3 101592506 to 101592547 41 - TSS region transcription start site region 34799
Tssr34800 3 101592573 to 101592584 11 - TSS region transcription start site region 34800
Tssr34801 3 101595088 to 101595115 27 - TSS region transcription start site region 34801
Gm42941 3 101595810 to 101597130 1320 - sense intronic lncRNA gene predicted gene 42941
Tssr30908 3 101600611 to 101600633 22 + TSS region transcription start site region 30908
Cpgi13620 3 101603884 to 101605226 1342 CpG island CpG island 13620
Tssr989 3 101604428 to 101604453 25 + TSS region transcription start site region 989
Tssr34802 3 101604539 to 101604552 13 - TSS region transcription start site region 34802
Tssr34803 3 101604580 to 101604629 49 - TSS region transcription start site region 34803
Tssr34804 3 101604649 to 101604654 5 - TSS region transcription start site region 34804
Tssr34805 3 101604655 to 101604689 34 - TSS region transcription start site region 34805
Tssr34806 3 101604693 to 101604715 22 - TSS region transcription start site region 34806
Tssr34807 3 101605168 to 101605190 22 - TSS region transcription start site region 34807
Tssr990 3 101606940 to 101606943 3 + TSS region transcription start site region 990
Gm33215 3 101634049 to 101650797 16748 - lncRNA gene predicted gene, 33215
Tssr30909 3 101634772 to 101634774 2 + TSS region transcription start site region 30909
Gm33265 3 101659087 to 101667301 8214 - lncRNA gene predicted gene, 33265
Tssr30910 3 101667601 to 101667624 23 + TSS region transcription start site region 30910
Gm43135 3 101691789 to 101699632 7843 + lincRNA gene predicted gene 43135
Gm33309 3 101727135 to 101737539 10404 - lncRNA gene predicted gene, 33309
D3Mit191 3 101731586 to 101731734 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 191
Gm43134 3 101748124 to 101750009 1885 + lincRNA gene predicted gene 43134
Cpgi13621 3 101806308 to 101806481 173 CpG island CpG island 13621
Mab21l3 3 101813076 to 101836726 23650 - protein coding gene mab-21-like 3
Gm33381 3 101826881 to 101834987 8106 + lncRNA gene predicted gene, 33381
Tssr34808 3 101836146 to 101836177 31 - TSS region transcription start site region 34808
Tssr34809 3 101836181 to 101836210 29 - TSS region transcription start site region 34809
Tssr34810 3 101836227 to 101836237 10 - TSS region transcription start site region 34810
Slc22a15 3 101855776 to 101924453 68677 - protein coding gene solute carrier family 22 (organic anion/cation transporter), member 15
Cpgi13622 3 101923760 to 101924811 1051 CpG island CpG island 13622
Tssr34811 3 101924196 to 101924215 19 - TSS region transcription start site region 34811
Tssr34812 3 101924280 to 101924299 19 - TSS region transcription start site region 34812
Tssr34813 3 101924378 to 101924408 30 - TSS region transcription start site region 34813
Tssr34814 3 101924420 to 101924454 34 - TSS region transcription start site region 34814
Tssr34815 3 101924468 to 101924492 24 - TSS region transcription start site region 34815
Tssr34816 3 101924508 to 101924520 12 - TSS region transcription start site region 34816
Tssr34817 3 101924524 to 101924545 21 - TSS region transcription start site region 34817
Tssr34818 3 101924629 to 101924640 11 - TSS region transcription start site region 34818
Cq3 3 101981602 to 101981751 149 QTL cholesterol QTL 3
D3Mit102 3 101981602 to 101981751 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 102
Nhlh2 3 102010110 to 102015492 5382 + protein coding gene nescient helix loop helix 2
Tssr30911 3 102010114 to 102010123 9 + TSS region transcription start site region 30911
Tssr30912 3 102010138 to 102010171 33 + TSS region transcription start site region 30912
Cpgi13623 3 102011565 to 102013265 1700 CpG island CpG island 13623
Tssr30913 3 102012291 to 102012302 11 + TSS region transcription start site region 30913
Tssr30914 3 102012349 to 102012367 18 + TSS region transcription start site region 30914
Tssr30915 3 102012401 to 102012425 24 + TSS region transcription start site region 30915
Tssr30916 3 102012430 to 102012441 11 + TSS region transcription start site region 30916
Tssr30917 3 102012442 to 102012456 14 + TSS region transcription start site region 30917
Tssr30918 3 102012497 to 102012507 10 + TSS region transcription start site region 30918
Cpgi13624 3 102023373 to 102023950 577 CpG island CpG island 13624
D3Mit77 3 102023842 to 102023991 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 77
Gm43243 3 102068050 to 102068327 277 + pseudogene predicted gene 43243
Gm18894 3 102074519 to 102075143 624 + pseudogene predicted gene, 18894
Tssr30919 3 102085917 to 102085936 19 + TSS region transcription start site region 30919
Casq2 3 102086420 to 102146514 60094 + protein coding gene calsequestrin 2
Tssr30920 3 102086436 to 102086447 11 + TSS region transcription start site region 30920
Tssr30921 3 102086471 to 102086524 53 + TSS region transcription start site region 30921
Gm43244 3 102129938 to 102131222 1284 + sense intronic lncRNA gene predicted gene 43244
4632404M16Rik 3 102134615 to 102137496 2881 + sense intronic lncRNA gene RIKEN cDNA 4632404M16 gene
Tssr30922 3 102144164 to 102144175 11 + TSS region transcription start site region 30922
Vangl1 3 102153583 to 102204693 51110 - protein coding gene VANGL planar cell polarity 1
Tssr34819 3 102165561 to 102165577 16 - TSS region transcription start site region 34819
Tssr34820 3 102165894 to 102165909 15 - TSS region transcription start site region 34820
Tssr34821 3 102165917 to 102165946 29 - TSS region transcription start site region 34821
Tssr34822 3 102166387 to 102166408 21 - TSS region transcription start site region 34822
Tssr34823 3 102166435 to 102166448 13 - TSS region transcription start site region 34823
Tssr34824 3 102166969 to 102167006 37 - TSS region transcription start site region 34824
Tssr34825 3 102167021 to 102167037 16 - TSS region transcription start site region 34825
Tssr34826 3 102167547 to 102167572 25 - TSS region transcription start site region 34826
Tssr34827 3 102167631 to 102167659 28 - TSS region transcription start site region 34827
Tssr34828 3 102167671 to 102167695 24 - TSS region transcription start site region 34828
Tssr34829 3 102167696 to 102167726 30 - TSS region transcription start site region 34829
Tssr30923 3 102167842 to 102167853 11 + TSS region transcription start site region 30923
Cpgi13625 3 102203609 to 102205013 1404 CpG island CpG island 13625
Gm16160 3 102203956 to 102206266 2310 + antisense lncRNA gene predicted gene 16160
Tssr34830 3 102204576 to 102204647 71 - TSS region transcription start site region 34830
Gm43241 3 102249669 to 102250265 596 + lincRNA gene predicted gene 43241
Tssr30924 3 102262392 to 102262446 54 + TSS region transcription start site region 30924
A230001M10Rik 3 102262405 to 102288771 26366 + lincRNA gene RIKEN cDNA A230001M10 gene
Tssr30925 3 102262449 to 102262460 11 + TSS region transcription start site region 30925
Tssr30926 3 102262516 to 102262527 11 + TSS region transcription start site region 30926
D3Mit248 3 102300376 to 102300523 147 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 248
Tssr30927 3 102332226 to 102332228 2 + TSS region transcription start site region 30927
Gm43242 3 102369162 to 102370937 1775 + lincRNA gene predicted gene 43242
Gm40110 3 102371350 to 102373128 1778 - lncRNA gene predicted gene, 40110
Gm33679 3 102377092 to 102383533 6441 - lncRNA gene predicted gene, 33679
Gm43245 3 102389540 to 102390007 467 - pseudogene predicted gene 43245
Tssr30928 3 102469635 to 102469643 8 + TSS region transcription start site region 30928
Cpgi13626 3 102469784 to 102470600 816 CpG island CpG island 13626
Tssr30929 3 102469898 to 102469912 14 + TSS region transcription start site region 30929
Tssr30930 3 102469918 to 102469932 14 + TSS region transcription start site region 30930
Ngf 3 102469919 to 102521013 51094 + protein coding gene nerve growth factor
Tssr30931 3 102491337 to 102491344 7 + TSS region transcription start site region 30931
Gm42679 3 102491342 to 102494247 2905 + sense intronic lncRNA gene predicted gene 42679
Gm46818 3 102500863 to 102506716 5853 - lncRNA gene predicted gene, 46818
Tssr30932 3 102506619 to 102506635 16 + TSS region transcription start site region 30932
Tssr30933 3 102513982 to 102513994 12 + TSS region transcription start site region 30933
Tssr30934 3 102520255 to 102520263 8 + TSS region transcription start site region 30934
Tssr30935 3 102520354 to 102520403 49 + TSS region transcription start site region 30935
Gm42678 3 102599373 to 102601593 2220 + lincRNA gene predicted gene 42678
Gm19202 3 102685910 to 102686717 807 - pseudogene predicted gene, 19202
Gm42677 3 102686735 to 102686861 126 - pseudogene predicted gene 42677
Gm40112 3 102694116 to 102696852 2736 + lncRNA gene predicted gene, 40112
Gm42682 3 102714252 to 102715516 1264 + lincRNA gene predicted gene 42682
Tspan2os 3 102720231 to 102735417 15186 - antisense lncRNA gene tetraspanin 2, opposite strand
Tssr30936 3 102724450 to 102724494 44 + TSS region transcription start site region 30936
Tssr30937 3 102725117 to 102725140 23 + TSS region transcription start site region 30937
Cpgi13627 3 102734305 to 102735528 1223 CpG island CpG island 13627
Tssr30938 3 102734496 to 102734530 34 + TSS region transcription start site region 30938
Tspan2 3 102734770 to 102772310 37540 + protein coding gene tetraspanin 2
Tssr30939 3 102734903 to 102734952 49 + TSS region transcription start site region 30939
Tssr30940 3 102734956 to 102734977 21 + TSS region transcription start site region 30940
Tssr30941 3 102735202 to 102735236 34 + TSS region transcription start site region 30941
Tssr30942 3 102748180 to 102748184 4 + TSS region transcription start site region 30942
Tssr30943 3 102760895 to 102760906 11 + TSS region transcription start site region 30943
Tssr30944 3 102775104 to 102775111 7 + TSS region transcription start site region 30944
Tshb 3 102775465 to 102782718 7253 - protein coding gene thyroid stimulating hormone, beta subunit
Tssr34831 3 102778326 to 102778342 16 - TSS region transcription start site region 34831
Tssr34832 3 102782670 to 102782675 5 - TSS region transcription start site region 34832
Tssr34833 3 102782708 to 102782715 7 - TSS region transcription start site region 34833
Aec1 3 102782718 to 7521114 -95261604 QTL autoimmune exocrinopathy 1
Gm42681 3 102783179 to 102784789 1610 - antisense lncRNA gene predicted gene 42681
Sycp1 3 102818499 to 102936100 117601 - protein coding gene synaptonemal complex protein 1
Gm42816 3 102830494 to 102830818 324 + pseudogene predicted gene 42816
Gm33952 3 102831590 to 102831997 407 + pseudogene predicted gene, 33952
Gm33866 3 102880780 to 102881068 288 + pseudogene predicted gene, 33866
Tssr34834 3 102925233 to 102925247 14 - TSS region transcription start site region 34834
Tssr991 3 102935252 to 102935256 4 - TSS region transcription start site region 991
Cpgi13628 3 102935314 to 102936250 936 CpG island CpG island 13628
Tssr34835 3 102936093 to 102936107 14 - TSS region transcription start site region 34835
Nr1h5 3 102939658 to 102964133 24475 - protein coding gene nuclear receptor subfamily 1, group H, member 5
Gm22826 3 102951949 to 102952113 164 - snRNA gene predicted gene, 22826
Tssr34836 3 102964124 to 102964137 13 - TSS region transcription start site region 34836
Cpgi13629 3 102995544 to 102996340 796 CpG island CpG island 13629
Tssr30945 3 102995709 to 102995788 79 + TSS region transcription start site region 30945
Sike1 3 102995740 to 103003914 8174 + protein coding gene suppressor of IKBKE 1
Tssr30946 3 102995799 to 102995810 11 + TSS region transcription start site region 30946
Tssr30947 3 102996123 to 102996160 37 + TSS region transcription start site region 30947
Cpgi13630 3 103020189 to 103021529 1340 CpG island CpG island 13630
Tssr34837 3 103020335 to 103020347 12 - TSS region transcription start site region 34837
Csde1 3 103020431 to 103058186 37755 + protein coding gene cold shock domain containing E1, RNA binding
Tssr992 3 103020451 to 103020469 18 - TSS region transcription start site region 992
Tssr30948 3 103020594 to 103020635 41 + TSS region transcription start site region 30948
Tssr34838 3 103020932 to 103020953 21 - TSS region transcription start site region 34838
Tssr30949 3 103028842 to 103028868 26 + TSS region transcription start site region 30949
Tssr34839 3 103028892 to 103028919 27 - TSS region transcription start site region 34839
Tssr30950 3 103028983 to 103029068 85 + TSS region transcription start site region 30950
Tssr30951 3 103029105 to 103029130 25 + TSS region transcription start site region 30951
Tssr30952 3 103030132 to 103030177 45 + TSS region transcription start site region 30952
Tssr30953 3 103043623 to 103043646 23 + TSS region transcription start site region 30953
Tssr30954 3 103049655 to 103049667 12 + TSS region transcription start site region 30954