Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:100738937-101085220

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D3Mit75 3 100747868 to 100747974 106 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 75
Cia5b 3 100747868 to 103837463 3089595 QTL collagen induced arthritis QTL 5b
Char4 3 100747974 to 69718176 -31029798 QTL P. chabaudi malaria resistance QTL 4
Tssr30882 3 100785724 to 100785756 32 + TSS region transcription start site region 30882
Gm40107 3 100811539 to 100817753 6214 - lncRNA gene predicted gene, 40107
Gm32720 3 100820397 to 100827023 6626 - lncRNA gene predicted gene, 32720
Tssr30883 3 100825452 to 100825467 15 + TSS region transcription start site region 30883
Vtcn1 3 100825459 to 100896922 71463 + protein coding gene V-set domain containing T cell activation inhibitor 1
Gm40108 3 100908937 to 100915220 6283 + lncRNA gene predicted gene, 40108
Tssr30884 3 100920775 to 100920783 8 + TSS region transcription start site region 30884
Tssr30885 3 100921692 to 100921702 10 + TSS region transcription start site region 30885
Cpgi13616 3 100921861 to 100922669 808 CpG island CpG island 13616
Tssr30886 3 100922436 to 100922473 37 + TSS region transcription start site region 30886
Tssr30887 3 100922482 to 100922499 17 + TSS region transcription start site region 30887
Trim45 3 100922493 to 100936925 14432 + protein coding gene tripartite motif-containing 45
Tssr30888 3 100924928 to 100924946 18 + TSS region transcription start site region 30888
Ttf2 3 100938860 to 100969663 30803 - protein coding gene transcription termination factor, RNA polymerase II
Gm12488 3 100955441 to 100955939 498 + pseudogene predicted gene 12488
Cpgi13617 3 100969293 to 100969894 601 CpG island CpG island 13617
Tssr34759 3 100969644 to 100969676 32 - TSS region transcription start site region 34759
Tssr34760 3 100969679 to 100969684 5 - TSS region transcription start site region 34760
D3Mit189 3 100975596 to 100975728 132 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 189
Cfsw1 3 100975596 to 100975728 132 QTL cystic fibrosis survival to weaning 1
Cd101 3 100993529 to 101029495 35966 - protein coding gene CD101 antigen
Tssr34761 3 101003754 to 101003789 35 - TSS region transcription start site region 34761
Tssr34762 3 101003810 to 101003829 19 - TSS region transcription start site region 34762
Tssr30889 3 101011014 to 101011048 34 + TSS region transcription start site region 30889
Tssr34763 3 101012111 to 101012128 17 - TSS region transcription start site region 34763
Tssr34764 3 101012130 to 101012141 11 - TSS region transcription start site region 34764
Tssr34765 3 101012148 to 101012162 14 - TSS region transcription start site region 34765
Tssr34766 3 101012678 to 101012687 9 - TSS region transcription start site region 34766
Tssr34767 3 101029524 to 101029533 9 - TSS region transcription start site region 34767
Tssr34768 3 101029543 to 101029558 15 - TSS region transcription start site region 34768
Ptgfrn 3 101040232 to 101110278 70046 - protein coding gene prostaglandin F2 receptor negative regulator
Tssr30890 3 101081732 to 101081737 5 + TSS region transcription start site region 30890
Gm43465 3 101084592 to 101087393 2801 - sense intronic lncRNA gene predicted gene 43465