Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:100660281-101560294

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Man1a2 3 100562203 to 100685473 123270 - protein coding gene mannosidase, alpha, class 1A, member 2
Tssr34752 3 100665218 to 100665230 12 - TSS region transcription start site region 34752
Gm43463 3 100678292 to 100680094 1802 - sense intronic lncRNA gene predicted gene 43463
Gm12485 3 100680265 to 100680555 290 + pseudogene predicted gene 12485
Tssr34753 3 100684590 to 100684626 36 - TSS region transcription start site region 34753
Cpgi13615 3 100684679 to 100686406 1727 CpG island CpG island 13615
Tssr34754 3 100684699 to 100684712 13 - TSS region transcription start site region 34754
Tssr34755 3 100684947 to 100684951 4 - TSS region transcription start site region 34755
Tssr34756 3 100685431 to 100685494 63 - TSS region transcription start site region 34756
Tssr30880 3 100685533 to 100685604 71 + TSS region transcription start site region 30880
Tssr34757 3 100685874 to 100685892 18 - TSS region transcription start site region 34757
Tssr34758 3 100685919 to 100686013 94 - TSS region transcription start site region 34758
Tssr30881 3 100692441 to 100692470 29 + TSS region transcription start site region 30881
Gm43464 3 100692706 to 100700084 7378 + lincRNA gene predicted gene 43464
Gm23465 3 100738452 to 100738713 261 - unclassified non-coding RNA gene predicted gene, 23465
D3Mit75 3 100747868 to 100747974 106 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 75
Cia5b 3 100747868 to 103837463 3089595 QTL collagen induced arthritis QTL 5b
Char4 3 100747974 to 69718176 -31029798 QTL P. chabaudi malaria resistance QTL 4
Tssr30882 3 100785724 to 100785756 32 + TSS region transcription start site region 30882
Gm40107 3 100811539 to 100817753 6214 - lncRNA gene predicted gene, 40107
Gm32720 3 100820397 to 100827023 6626 - lncRNA gene predicted gene, 32720
Tssr30883 3 100825452 to 100825467 15 + TSS region transcription start site region 30883
Vtcn1 3 100825459 to 100896922 71463 + protein coding gene V-set domain containing T cell activation inhibitor 1
Gm40108 3 100908937 to 100915220 6283 + lncRNA gene predicted gene, 40108
Tssr30884 3 100920775 to 100920783 8 + TSS region transcription start site region 30884
Tssr30885 3 100921692 to 100921702 10 + TSS region transcription start site region 30885
Cpgi13616 3 100921861 to 100922669 808 CpG island CpG island 13616
Tssr30886 3 100922436 to 100922473 37 + TSS region transcription start site region 30886
Tssr30887 3 100922482 to 100922499 17 + TSS region transcription start site region 30887
Trim45 3 100922493 to 100936925 14432 + protein coding gene tripartite motif-containing 45
Tssr30888 3 100924928 to 100924946 18 + TSS region transcription start site region 30888
Ttf2 3 100938860 to 100969663 30803 - protein coding gene transcription termination factor, RNA polymerase II
Gm12488 3 100955441 to 100955939 498 + pseudogene predicted gene 12488
Cpgi13617 3 100969293 to 100969894 601 CpG island CpG island 13617
Tssr34759 3 100969644 to 100969676 32 - TSS region transcription start site region 34759
Tssr34760 3 100969679 to 100969684 5 - TSS region transcription start site region 34760
D3Mit189 3 100975596 to 100975728 132 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 189
Cfsw1 3 100975596 to 100975728 132 QTL cystic fibrosis survival to weaning 1
Cd101 3 100993529 to 101029495 35966 - protein coding gene CD101 antigen
Tssr34761 3 101003754 to 101003789 35 - TSS region transcription start site region 34761
Tssr34762 3 101003810 to 101003829 19 - TSS region transcription start site region 34762
Tssr30889 3 101011014 to 101011048 34 + TSS region transcription start site region 30889
Tssr34763 3 101012111 to 101012128 17 - TSS region transcription start site region 34763
Tssr34764 3 101012130 to 101012141 11 - TSS region transcription start site region 34764
Tssr34765 3 101012148 to 101012162 14 - TSS region transcription start site region 34765
Tssr34766 3 101012678 to 101012687 9 - TSS region transcription start site region 34766
Tssr34767 3 101029524 to 101029533 9 - TSS region transcription start site region 34767
Tssr34768 3 101029543 to 101029558 15 - TSS region transcription start site region 34768
Ptgfrn 3 101040232 to 101110278 70046 - protein coding gene prostaglandin F2 receptor negative regulator
Tssr30890 3 101081732 to 101081737 5 + TSS region transcription start site region 30890
Gm43465 3 101084592 to 101087393 2801 - sense intronic lncRNA gene predicted gene 43465
Tssr34769 3 101097065 to 101097070 5 - TSS region transcription start site region 34769
Tssr34770 3 101106351 to 101106356 5 - TSS region transcription start site region 34770
Cpgi13618 3 101109432 to 101110996 1564 CpG island CpG island 13618
Tssr34771 3 101110156 to 101110170 14 - TSS region transcription start site region 34771
Tssr34772 3 101110281 to 101110294 13 - TSS region transcription start site region 34772
Tssr985 3 101110296 to 101110336 40 - TSS region transcription start site region 985
Tssr34773 3 101110374 to 101110469 95 - TSS region transcription start site region 34773
Tssr34774 3 101110747 to 101110782 35 - TSS region transcription start site region 34774
Tssr986 3 101130743 to 101130768 25 + TSS region transcription start site region 986
Tssr30891 3 101131049 to 101131065 16 + TSS region transcription start site region 30891
D3Mit342 3 101165603 to 101165715 112 DNA segment DNA Segment, Chr 3 Massachusetts Institute of Technology 342
Gm12486 3 101206859 to 101207399 540 - pseudogene predicted gene 12486
Tpt1-ps1 3 101233460 to 101233895 435 + pseudogene tumor protein, translationally-controlled, pseudogene 1
Tssr30892 3 101237541 to 101237549 8 + TSS region transcription start site region 30892
Tssr34775 3 101250616 to 101250619 3 - TSS region transcription start site region 34775
Gm12490 3 101260917 to 101261455 538 + pseudogene predicted gene 12490
Cd2 3 101275908 to 101287939 12031 - protein coding gene CD2 antigen
Tssr34776 3 101276175 to 101276223 48 - TSS region transcription start site region 34776
Tssr34777 3 101280286 to 101280307 21 - TSS region transcription start site region 34777
Tssr30893 3 101280632 to 101280672 40 + TSS region transcription start site region 30893
Tssr34778 3 101283157 to 101283161 4 - TSS region transcription start site region 34778
Tssr34779 3 101283962 to 101283969 7 - TSS region transcription start site region 34779
Tssr30894 3 101284136 to 101284157 21 + TSS region transcription start site region 30894
Tssr30895 3 101286565 to 101286569 4 + TSS region transcription start site region 30895
Tssr30896 3 101286640 to 101286646 6 + TSS region transcription start site region 30896
Tssr30897 3 101286675 to 101286678 3 + TSS region transcription start site region 30897
Tssr34780 3 101287546 to 101287554 8 - TSS region transcription start site region 34780
Tssr34781 3 101287841 to 101287861 20 - TSS region transcription start site region 34781
Tssr34782 3 101287882 to 101287893 11 - TSS region transcription start site region 34782
Tssr34783 3 101287897 to 101287957 60 - TSS region transcription start site region 34783
Tssr34784 3 101288127 to 101288142 15 - TSS region transcription start site region 34784
Tssr34785 3 101290739 to 101290754 15 - TSS region transcription start site region 34785
Gm32803 3 101290998 to 101296608 5610 - lncRNA gene predicted gene, 32803
Tssr34786 3 101296555 to 101296566 11 - TSS region transcription start site region 34786
Tssr30898 3 101297481 to 101297506 25 + TSS region transcription start site region 30898
Tssr30899 3 101297523 to 101297536 13 + TSS region transcription start site region 30899
Tssr34787 3 101300197 to 101300206 9 - TSS region transcription start site region 34787
Tssr34788 3 101300234 to 101300239 5 - TSS region transcription start site region 34788
Gm10355 3 101306563 to 101307079 516 - pseudogene predicted gene 10355
Tssr30900 3 101310451 to 101310466 15 + TSS region transcription start site region 30900
Gm43467 3 101310846 to 101311282 436 + pseudogene predicted gene 43467
Gm32848 3 101315914 to 101321293 5379 + lncRNA gene predicted gene, 32848
Gm32900 3 101339626 to 101354606 14980 - lncRNA gene predicted gene, 32900
Cpgi13619 3 101376497 to 101377974 1477 CpG island CpG island 13619
Tssr30901 3 101376990 to 101377023 33 + TSS region transcription start site region 30901
Tssr30902 3 101377074 to 101377158 84 + TSS region transcription start site region 30902
Igsf3 3 101377114 to 101463060 85946 + protein coding gene immunoglobulin superfamily, member 3
D3Mit312 3 101400619 to 101400741 122 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 312
Gm42939 3 101407793 to 101409997 2204 + sense intronic lncRNA gene predicted gene 42939
Gm42938 3 101411539 to 101412610 1071 + sense intronic lncRNA gene predicted gene 42938
Tssr987 3 101424122 to 101424125 3 + TSS region transcription start site region 987
Gm42538 3 101424615 to 101426936 2321 - antisense lncRNA gene predicted gene 42538
Tssr34789 3 101426958 to 101426975 17 - TSS region transcription start site region 34789
Tssr30903 3 101427027 to 101427075 48 + TSS region transcription start site region 30903
Tssr988 3 101428846 to 101428850 4 + TSS region transcription start site region 988
Tssr30904 3 101460614 to 101460624 10 + TSS region transcription start site region 30904
Tssr30905 3 101462069 to 101462092 23 + TSS region transcription start site region 30905
Gm40109 3 101501927 to 101507846 5919 - lncRNA gene predicted gene, 40109
Gm33162 3 101511555 to 101536250 24695 - lncRNA gene predicted gene, 33162
Tssr30906 3 101527046 to 101527056 10 + TSS region transcription start site region 30906
Tssr34790 3 101536435 to 101536446 11 - TSS region transcription start site region 34790
Tssr34791 3 101538940 to 101538941 1 - TSS region transcription start site region 34791