Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:100462203-100785473

52 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
D3Mit12	3	100465596 to 100465744	148		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 12
Ap6q	3	100465596 to 147339967	46874371		QTL	alcohol preference 6 QTL
Nctm1	3	100465744 to 97791322	-2674422		QTL	Nakano cataract modifier 1
Tent5c	3	100468057 to 100489192	21135	-	protein coding gene	terminal nucleotidyltransferase 5C
Tssr34744	3	100472598 to 100472617	19	-	TSS region	transcription start site region 34744
Tssr34745	3	100476440 to 100476445	5	-	TSS region	transcription start site region 34745
Tssr34746	3	100483635 to 100483637	2	-	TSS region	transcription start site region 34746
Tssr34747	3	100487941 to 100487975	34	-	TSS region	transcription start site region 34747
Cpgi13614	3	100488231 to 100490043	1812		CpG island	CpG island 13614
Tssr34748	3	100489163 to 100489215	52	-	TSS region	transcription start site region 34748
Tssr34749	3	100489234 to 100489248	14	-	TSS region	transcription start site region 34749
Tssr34750	3	100489294 to 100489316	22	-	TSS region	transcription start site region 34750
Tssr34751	3	100489329 to 100489354	25	-	TSS region	transcription start site region 34751
Tssr983	3	100489377 to 100489386	9	-	TSS region	transcription start site region 983
Tssr984	3	100489413 to 100489418	5	-	TSS region	transcription start site region 984
Tssr30878	3	100489463 to 100489496	33	+	TSS region	transcription start site region 30878
Tssr30879	3	100489508 to 100489560	52	+	TSS region	transcription start site region 30879
Gm12474	3	100489664 to 100523920	34256	+	lincRNA gene	predicted gene 12474
Gm40106	3	100495359 to 100541349	45990	-	lncRNA gene	predicted gene, 40106
Gm42868	3	100497429 to 100500125	2696	+	sense intronic lncRNA gene	predicted gene 42868
Ltpr3f	3	100556675 to 100556821	146		QTL	Leishmania tropica response 3f
Ltpr3e	3	100556675 to 100556821	146		QTL	Leishmania tropica response 3e
Ltpr3d	3	100556675 to 100556821	146		QTL	Leishmania tropica response 3d
Ltpr3c	3	100556675 to 100556821	146		QTL	Leishmania tropica response 3c
Ltpr3b	3	100556675 to 100556821	146		QTL	Leishmania tropica response 3b
Ltpr3g	3	100556675 to 100556821	146		QTL	Leishmania tropica response 3g
Lmr11a	3	100556675 to 100556821	146		QTL	leishmaniasis resistance 11a
tnyw	3	100556675 to 121708839	21152164		heritable phenotypic marker	tiny wasting
D3Mit11	3	100556675 to 100556821	146		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 11
Rapop3	3	100556821 to 90603910	-9952911		QTL	radiation-induced apoptosis 3
Ltpr3	3	100556821 to 56796681	-43760140		QTL	Leishmania tropica response 3
Man1a2	3	100562203 to 100685473	123270	-	protein coding gene	mannosidase, alpha, class 1A, member 2
Gm43466	3	100582314 to 100587527	5213	-	sense intronic lncRNA gene	predicted gene 43466
Gm42869	3	100624902 to 100627022	2120	-	sense intronic lncRNA gene	predicted gene 42869
Gm43462	3	100627297 to 100630944	3647	-	sense intronic lncRNA gene	predicted gene 43462
Tssr34752	3	100665218 to 100665230	12	-	TSS region	transcription start site region 34752
Gm43463	3	100678292 to 100680094	1802	-	sense intronic lncRNA gene	predicted gene 43463
Gm12485	3	100680265 to 100680555	290	+	pseudogene	predicted gene 12485
Tssr34753	3	100684590 to 100684626	36	-	TSS region	transcription start site region 34753
Cpgi13615	3	100684679 to 100686406	1727		CpG island	CpG island 13615
Tssr34754	3	100684699 to 100684712	13	-	TSS region	transcription start site region 34754
Tssr34755	3	100684947 to 100684951	4	-	TSS region	transcription start site region 34755
Tssr34756	3	100685431 to 100685494	63	-	TSS region	transcription start site region 34756
Tssr30880	3	100685533 to 100685604	71	+	TSS region	transcription start site region 30880
Tssr34757	3	100685874 to 100685892	18	-	TSS region	transcription start site region 34757
Tssr34758	3	100685919 to 100686013	94	-	TSS region	transcription start site region 34758
Tssr30881	3	100692441 to 100692470	29	+	TSS region	transcription start site region 30881
Gm43464	3	100692706 to 100700084	7378	+	lincRNA gene	predicted gene 43464
Gm23465	3	100738452 to 100738713	261	-	unclassified non-coding RNA gene	predicted gene, 23465
D3Mit75	3	100747868 to 100747974	106		DNA segment	DNA segment, Chr 3, Massachusetts Institute of Technology 75
Cia5b	3	100747868 to 103837463	3089595		QTL	collagen induced arthritis QTL 5b
Char4	3	100747974 to 69718176	-31029798		QTL	P. chabaudi malaria resistance QTL 4