Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:99075778-101735870

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm29235 2 99357246 to 99357729 483 - lincRNA gene predicted gene 29235
D2Mit184 2 99439553 to 99439688 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 184
Tssr19066 2 99454546 to 99454549 3 + TSS region transcription start site region 19066
Gm13809 2 99555251 to 99555878 627 + pseudogene predicted gene 13809
Tssr25356 2 99573921 to 99573923 2 - TSS region transcription start site region 25356
Tssr19067 2 99734821 to 99734830 9 + TSS region transcription start site region 19067
Tssr19068 2 99800213 to 99800217 4 + TSS region transcription start site region 19068
Gm13808 2 100058933 to 100059116 183 + pseudogene predicted gene 13808
D2Mit301 2 100336003 to 100336129 126 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 301
Gm13811 2 100336203 to 100336458 255 + pseudogene predicted gene 13811
D2Mit437 2 100405778 to 100405870 92 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 437
Gm13813 2 100407493 to 100408279 786 - pseudogene predicted gene 13813
Tssr25357 2 100407792 to 100407802 10 - TSS region transcription start site region 25357
Gm13812 2 100460188 to 100461534 1346 - pseudogene predicted gene 13812
Gm13810 2 100626697 to 100628043 1346 - pseudogene predicted gene 13810
D2Mit384 2 101088230 to 101088347 117 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 384
D2Mit440 2 101155182 to 101155293 111 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 440
D2Mit300 2 101178143 to 101178248 105 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 300
Vss 2 101178143 to 108259759 7081616 heritable phenotypic marker variable spot and size
Skmw8 2 101178143 to 101178248 105 QTL skeletal muscle weight 8
Gm39886 2 101413261 to 101458277 45016 - lncRNA gene predicted gene, 39886
D2Mit438 2 101488192 to 101488310 118 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 438
D2Mit438.1 2 101488286 to 101488395 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 438.1
Gm39887 2 101549837 to 101557787 7950 - lncRNA gene predicted gene, 39887
Tssr19069 2 101550384 to 101550395 11 + TSS region transcription start site region 19069
B230118H07Rik 2 101560781 to 101629332 68551 - protein coding gene RIKEN cDNA B230118H07 gene
Tssr19070 2 101563319 to 101563333 14 + TSS region transcription start site region 19070
Gm20693 2 101570624 to 101570834 210 + pseudogene predicted gene 20693
Tssr19071 2 101581551 to 101581593 42 + TSS region transcription start site region 19071
A130042O14Rik 2 101600588 to 101604701 4113 unclassified non-coding RNA gene RIKEN cDNA A130042O14 gene
Tssr25358 2 101621033 to 101621066 33 - TSS region transcription start site region 25358
Tssr19072 2 101621781 to 101621792 11 + TSS region transcription start site region 19072
Tssr19073 2 101621795 to 101621811 16 + TSS region transcription start site region 19073
Tssr25359 2 101624091 to 101624094 3 - TSS region transcription start site region 25359
Tssr19074 2 101624677 to 101624695 18 + TSS region transcription start site region 19074
Tssr19075 2 101624696 to 101624730 34 + TSS region transcription start site region 19075
Tssr19076 2 101624734 to 101624756 22 + TSS region transcription start site region 19076
Rag2 2 101624748 to 101632528 7780 + protein coding gene recombination activating gene 2
Tssr19077 2 101624769 to 101624780 11 + TSS region transcription start site region 19077
Tssr19078 2 101627406 to 101627421 15 + TSS region transcription start site region 19078
Cpgi11969 2 101628713 to 101629023 310 CpG island CpG island 11969
Tssr25360 2 101628930 to 101628954 24 - TSS region transcription start site region 25360
Tssr25361 2 101628958 to 101629014 56 - TSS region transcription start site region 25361
Tssr25362 2 101629016 to 101629025 9 - TSS region transcription start site region 25362
Tssr25363 2 101629026 to 101629034 8 - TSS region transcription start site region 25363
Rag1 2 101638282 to 101649501 11219 - protein coding gene recombination activating 1
Tssr25364 2 101640102 to 101640123 21 - TSS region transcription start site region 25364
Tssr25365 2 101640226 to 101640236 10 - TSS region transcription start site region 25365
Tssr25366 2 101641267 to 101641278 11 - TSS region transcription start site region 25366
Tssr25367 2 101641563 to 101641577 14 - TSS region transcription start site region 25367
Tssr25368 2 101643589 to 101643598 9 - TSS region transcription start site region 25368
Tssr25369 2 101643729 to 101643741 12 - TSS region transcription start site region 25369
Tssr25370 2 101643912 to 101643919 7 - TSS region transcription start site region 25370
Tssr25371 2 101644181 to 101644192 11 - TSS region transcription start site region 25371
Cpgi11970 2 101644293 to 101644499 206 CpG island CpG island 11970
Tssr19079 2 101644392 to 101644435 43 + TSS region transcription start site region 19079
Tssr25372 2 101644857 to 101644872 15 - TSS region transcription start site region 25372
Tssr25373 2 101649417 to 101649422 5 - TSS region transcription start site region 25373
Tssr25374 2 101649523 to 101649539 16 - TSS region transcription start site region 25374
Tssr19080 2 101649697 to 101649728 31 + TSS region transcription start site region 19080
Tssr19081 2 101649731 to 101649749 18 + TSS region transcription start site region 19081
Tssr19082 2 101649825 to 101649830 5 + TSS region transcription start site region 19082
Tssr25375 2 101650676 to 101650680 4 - TSS region transcription start site region 25375
Gm34041 2 101657856 to 101665715 7859 - lncRNA gene predicted gene, 34041
Cpgi11971 2 101678135 to 101679083 948 CpG island CpG island 11971
Tssr19083 2 101678403 to 101678469 66 + TSS region transcription start site region 19083
Traf6 2 101678429 to 101701669 23240 + protein coding gene TNF receptor-associated factor 6
D2Mit161 2 101694497 to 101694645 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 161
Prr5l 2 101714285 to 101883027 168742 - protein coding gene proline rich 5 like